FFCP PHASE1:Hg19::chr3:150264121..150264134,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:150264121..150264134,-
|short_description=p5@SERP1
|description=CAGE_peak_5_at_SERP1_5end
|association_with_transcript=151bp_to_ENST00000491660_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27230 | |EntrezGene=27230 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10759 | |HGNC=10759 | ||
|TSSclassifier=strong | |||
|UniProt=C9JUH5 | |UniProt=C9JUH5 | ||
|association_with_transcript=151bp_to_ENST00000491660_5end | |||
|cluster_id=chr3:150264121..150264134,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_5_at_SERP1_5end | |||
|id=chr3:150264121..150264134,- | |||
|ontology_enrichment_celltype=CL:0000766!2.22e-38!76;CL:0000557!8.53e-35!71;CL:0002009!2.59e-34!65;CL:0000763!4.42e-34!112;CL:0000049!4.42e-34!112;CL:0002194!2.75e-33!63;CL:0000576!2.75e-33!63;CL:0000040!2.75e-33!63;CL:0000559!2.75e-33!63;CL:0000839!6.36e-31!70;CL:0002057!2.38e-27!42;CL:0000037!2.43e-27!172;CL:0000566!2.43e-27!172;CL:0000738!3.20e-27!140;CL:0000860!6.70e-26!45;CL:0002032!1.43e-24!165;CL:0000837!1.43e-24!165;CL:0000988!2.43e-24!182;CL:0002087!1.06e-20!119;CL:0002031!2.77e-19!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.32e-21;33!CL:0002057;5.32e-21;33!CL:0000473;2.15e-20;39!CL:0000234;2.15e-20;39!CL:0000576;1.60e-19;48!CL:0000766;7.97e-17;69!CL:0000763;2.64e-11;100!CL:0000738;6.55e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.03e-39,72;CL:0000557,4.56e-36,67;CL:0002009,1.04e-35,61;CL:0000763,8.20e-35,108;CL:0000049,8.20e-35,108;CL:0002194,1.11e-34,59;CL:0000576,1.11e-34,59;CL:0000040,1.11e-34,59;CL:0000559,1.11e-34,59;CL:0000839,5.03e-32,66;CL:0000473,7.61e-31,48;CL:0000234,7.61e-31,48;CL:0000860,1.38e-27,42;CL:0002057,1.38e-27,42;CL:0000037,2.27e-27,168;CL:0000738,2.74e-27,136;CL:0002032,1.41e-24,161;CL:0000837,1.41e-24,161;CL:0000988,1.47e-24,177;CL:0002087,1.03e-20,115;CL:0002031,2.94e-19,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.83e-20;42!CL:0000049;1.82e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.04e-33!102;UBERON:0003061!6.04e-33!102;UBERON:0002193!2.13e-31!112;UBERON:0002371!3.93e-29!80;UBERON:0001474!9.58e-26!86;UBERON:0003081!2.84e-23!216;UBERON:0002405!6.48e-22!115;UBERON:0004765!3.44e-19!101;UBERON:0001434!3.44e-19!101;UBERON:0002204!1.07e-12!167;UBERON:0000926!1.63e-08!448;UBERON:0004120!1.63e-08!448;UBERON:0006603!1.63e-08!448;UBERON:0007023!6.06e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.18e-33,98;UBERON:0003061,1.18e-33,98;UBERON:0002193,7.93e-32,108;UBERON:0002371,3.89e-30,76;UBERON:0002405,4.40e-27,93;UBERON:0003081,6.24e-27,203;UBERON:0001474,1.20e-26,82;UBERON:0004765,7.58e-23,90;UBERON:0001434,2.95e-18,100;UBERON:0000926,1.93e-14,315;UBERON:0004120,1.93e-14,315;UBERON:0006603,1.93e-14,315;UBERON:0002204,1.05e-11,167;UBERON:0007023,5.12e-07,114 | |||
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| ||
|short_description=p5@SERP1 | |||
}} | }} |
Latest revision as of 23:44, 15 September 2015
Short description: | p5@SERP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SERP1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 151bp_to_ENST00000491660_5end |
EntrezGene: | SERP1 |
HGNC: | 10759 |
UniProt: | C9JUH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.03e-39 | 72 |
granulocyte monocyte progenitor cell | 4.56e-36 | 67 |
macrophage dendritic cell progenitor | 1.04e-35 | 61 |
myeloid cell | 8.20e-35 | 108 |
common myeloid progenitor | 8.20e-35 | 108 |
monopoietic cell | 1.11e-34 | 59 |
monocyte | 1.11e-34 | 59 |
monoblast | 1.11e-34 | 59 |
promonocyte | 1.11e-34 | 59 |
myeloid lineage restricted progenitor cell | 5.03e-32 | 66 |
defensive cell | 7.61e-31 | 48 |
phagocyte | 7.61e-31 | 48 |
classical monocyte | 1.38e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.38e-27 | 42 |
hematopoietic stem cell | 2.27e-27 | 168 |
leukocyte | 2.74e-27 | 136 |
hematopoietic oligopotent progenitor cell | 1.41e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.41e-24 | 161 |
hematopoietic cell | 1.47e-24 | 177 |
nongranular leukocyte | 1.03e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 2.94e-19 | 120 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.18e-33 | 98 |
blood island | 1.18e-33 | 98 |
hemolymphoid system | 7.93e-32 | 108 |
bone marrow | 3.89e-30 | 76 |
immune system | 4.40e-27 | 93 |
lateral plate mesoderm | 6.24e-27 | 203 |
bone element | 1.20e-26 | 82 |
skeletal element | 7.58e-23 | 90 |
skeletal system | 2.95e-18 | 100 |
mesoderm | 1.93e-14 | 315 |
mesoderm-derived structure | 1.93e-14 | 315 |
presumptive mesoderm | 1.93e-14 | 315 |
musculoskeletal system | 1.05e-11 | 167 |
adult organism | 5.12e-07 | 114 |