FFCP PHASE1:Hg19::chr4:146401920..146401926,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4086 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |||
|TSSclassifier=strong | |||
|UniProt=D6REQ3 | |||
|association_with_transcript=-419bp_to_ENST00000514778_5end | |||
|cluster_id=chr4:146401920..146401926,+ | |||
|description=CAGE_peak_14_at_SMAD1_5end | |||
|id=chr4:146401920..146401926,+ | |||
|ontology_enrichment_celltype=CL:0002139!2.44e-21!24;CL:0000115!2.42e-17!35;CL:0005020!2.86e-15!6;CL:0002138!2.86e-15!6;CL:0005022!2.86e-15!6;CL:0002078!9.02e-13!44;CL:0000071!1.59e-10!18;CL:0002546!1.59e-10!18;CL:0000213!8.78e-09!57;CL:0000215!8.78e-09!57;CL:0002144!1.22e-08!3;CL:0002618!6.92e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002138;5.07e-35;6!CL:0002144;3.59e-26;3!CL:0002139;1.58e-21;24!CL:0000115;8.74e-13;36!CL:0002078;8.60e-12;45!CL:0000817;1.55e-09;1!CL:0000213;4.93e-08;58!CL:0000215;4.93e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,2.80e-35,6;CL:0002138,2.80e-35,6;CL:0005022,2.80e-35,6;CL:0002144,2.46e-26,3;CL:0002139,1.11e-21,24;CL:0000115,7.57e-18,36;CL:0002078,5.14e-14,45;CL:0000213,1.41e-10,58;CL:0000215,1.41e-10,58 | |||
|ontology_enrichment_development_v019=CL:0005022;5.07e-35;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.06e-14!115;UBERON:0002465!1.69e-11!10;UBERON:0001473!3.30e-11!8;UBERON:0004536!3.30e-11!8;UBERON:0006558!3.30e-11!8;UBERON:0001986!1.59e-10!18;UBERON:0004638!1.59e-10!18;UBERON:0004852!1.59e-10!18;UBERON:0000487!6.26e-10!22;UBERON:0001915!1.22e-08!3;UBERON:0001982!1.22e-08!3;UBERON:0004111!1.30e-08!241;UBERON:0006914!1.90e-08!25;UBERON:0000477!4.24e-08!286;UBERON:0000055!4.36e-08!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;2.89e-26;8!UBERON:0004536;2.89e-26;8!UBERON:0006558;2.89e-26;8!UBERON:0010523;3.59e-26;3!UBERON:0001915;3.59e-26;3!UBERON:0001982;3.59e-26;3!UBERON:0002465;5.28e-21;10!UBERON:0002405;9.30e-11;27!UBERON:0006834;4.46e-10;1!UBERON:0005795;5.30e-10;1!UBERON:0000055;2.95e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.85e-26,8;UBERON:0004536,1.85e-26,8;UBERON:0006558,1.85e-26,8;UBERON:0010523,2.46e-26,3;UBERON:0001915,2.46e-26,3;UBERON:0001982,2.46e-26,3;UBERON:0002465,3.71e-21,10;UBERON:0006834,4.46e-10,1;UBERON:0000055,9.37e-09,68;UBERON:0002049,1.83e-07,78;UBERON:0007798,1.83e-07,78 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0.174129737299267,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0,0.417989933073621,3.10100111003195,4.98072767761394,6.6944122552934,7.65375702507379,1.52054421143703,4.63717909341522,0,0,0.625098097988558,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29929802984966,0.925971025153221,1.52203321787679,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.863663664408557,3.08454505380579,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15415370381156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,1.28236427328014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38545801361771,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.872901148395775,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.53746777989381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.996637174564964,0.316801009558219,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.640724475406168,0.314408610199332,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1058891937792,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0.336283722218824,0,0.455324382702595,0.532214220975833,0,0,0,0,0,0.111231401892069,1.33438257845874,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,1.33461648913121,0,0.485710993059139,0,0,0,0.79062257427272,0,0.452888530700021,0.308696632431779,0,0,0.245148321753905,0,0,0,0,0,0.187967835959707,1.61144719933943,0,0,0,0,0,0,0,0,0,0.436350690340377,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0,0,0.476128862927481,0,0.372448285775147,0,0.381882949668989,0.606351566874658,0.217716747896961,1.02669990325584,0.336760265072938,0.430333232356058,0.99798106963804,0,0,0,0,0,5.37862354404612,4.47585796147312,0.665756774185513,1.00636896795513,0 | |||
|short_description=p14@SMAD1 | |||
}} |
Latest revision as of 23:06, 15 September 2015
Short description: | p14@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_SMAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -419bp_to_ENST00000514778_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | D6REQ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 2.80e-35 | 6 |
endothelial cell of lymphatic vessel | 2.80e-35 | 6 |
vascular lymphangioblast | 2.80e-35 | 6 |
capillary endothelial cell | 2.46e-26 | 3 |
endothelial cell of vascular tree | 1.11e-21 | 24 |
endothelial cell | 7.57e-18 | 36 |
meso-epithelial cell | 5.14e-14 | 45 |
lining cell | 1.41e-10 | 58 |
barrier cell | 1.41e-10 | 58 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.85e-26 | 8 |
lymph vasculature | 1.85e-26 | 8 |
lymphatic part of lymphoid system | 1.85e-26 | 8 |
microcirculatory vessel | 2.46e-26 | 3 |
endothelium of capillary | 2.46e-26 | 3 |
capillary | 2.46e-26 | 3 |
lymphoid system | 3.71e-21 | 10 |
uterus or analog | 4.46e-10 | 1 |
vessel | 9.37e-09 | 68 |
vasculature | 1.83e-07 | 78 |
vascular system | 1.83e-07 | 78 |