FFCP PHASE1:Hg19::chr3:149688655..149688714,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:149688655..149688714,-
|short_description=p1@PFN2
|description=CAGE_peak_1_at_PFN2_5end
|association_with_transcript=0bp_to_ENST00000423691,ENST00000460404...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5217 | |EntrezGene=5217 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8882 | |HGNC=8882 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9Q6,C9J5V8,F2Z3G0,C9J2N0 | |UniProt=G5E9Q6,C9J5V8,F2Z3G0,C9J2N0 | ||
|association_with_transcript=0bp_to_ENST00000423691,ENST00000460404,ENST00000461930,ENST00000468323,ENST00000490975,ENST00000498169_5end | |||
|cluster_id=chr3:149688655..149688714,- | |||
|description=CAGE_peak_1_at_PFN2_5end | |||
|id=chr3:149688655..149688714,- | |||
|ontology_enrichment_celltype=CL:0000055!6.27e-34!180;CL:0002321!4.72e-22!248;CL:0000220!6.64e-22!246;CL:0000393!1.63e-16!60;CL:0000211!1.63e-16!60;CL:0000680!1.87e-16!57;CL:0000056!1.87e-16!57;CL:0000355!1.87e-16!57;CL:0000187!2.06e-16!54;CL:0000183!4.17e-15!59;CL:0000192!2.02e-14!42;CL:0000514!2.02e-14!42;CL:0000359!2.28e-11!32;CL:0000222!5.31e-11!119;CL:0000057!5.74e-11!75;CL:0000221!5.87e-10!71;CL:0000133!2.16e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.84e-11;32!CL:0000192;1.82e-10;43!CL:0000187;4.11e-09;55!CL:0000393;4.13e-09;61!CL:0000211;4.13e-09;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.86e-22,250;CL:0000393,1.03e-16,61;CL:0000211,1.03e-16,61;CL:0000680,1.20e-16,58;CL:0000056,1.20e-16,58;CL:0000355,1.20e-16,58;CL:0000187,1.33e-16,55;CL:0000192,1.36e-14,43;CL:0000514,1.36e-14,43;CL:0000359,2.13e-11,32;CL:0000222,4.28e-11,121;CL:0000057,7.12e-11,76;CL:0000221,1.87e-10,72;CL:0000133,2.06e-08,59 | |||
|ontology_enrichment_development_v019=CL:0000514;1.82e-10;43!CL:0000355;9.64e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.27e-31!365;UBERON:0000481!5.48e-22!347;UBERON:0000119!1.22e-21!312;UBERON:0000914!2.15e-21!83;UBERON:0002329!2.15e-21!83;UBERON:0003077!2.15e-21!83;UBERON:0003059!2.15e-21!83;UBERON:0007282!2.15e-21!83;UBERON:0009618!2.15e-21!83;UBERON:0007285!2.15e-21!83;UBERON:0000483!4.27e-21!309;UBERON:0000486!7.26e-19!82;UBERON:0004290!3.67e-18!70;UBERON:0005256!2.09e-16!143;UBERON:0001134!2.86e-16!61;UBERON:0002036!2.86e-16!61;UBERON:0003082!2.86e-16!61;UBERON:0002100!9.10e-16!216;UBERON:0002385!3.00e-15!63;UBERON:0001015!3.00e-15!63;UBERON:0000383!3.00e-15!63;UBERON:0004121!1.02e-13!169;UBERON:0000924!4.24e-13!173;UBERON:0006601!4.24e-13!173;UBERON:0000468!1.69e-12!659;UBERON:0000033!6.01e-12!123;UBERON:0003104!8.82e-11!238;UBERON:0009142!8.82e-11!238;UBERON:0000922!2.39e-10!612;UBERON:0000153!3.66e-10!129;UBERON:0007811!3.66e-10!129;UBERON:0000467!6.52e-10!625;UBERON:0000923!9.11e-10!604;UBERON:0005291!9.11e-10!604;UBERON:0006598!9.11e-10!604;UBERON:0002532!9.11e-10!604;UBERON:0002050!9.98e-10!605;UBERON:0005423!9.98e-10!605;UBERON:0000480!9.98e-10!626;UBERON:0000477!1.85e-09!286;UBERON:0000490!3.80e-09!138;UBERON:0001017!8.21e-09!82;UBERON:0000073!9.63e-09!94;UBERON:0001016!9.63e-09!94;UBERON:0005743!1.24e-08!86;UBERON:0000064!1.39e-08!219;UBERON:0004111!1.48e-08!241;UBERON:0000025!2.34e-08!194;UBERON:0003102!3.10e-08!95;UBERON:0003075!1.62e-07!86;UBERON:0007284!1.62e-07!86;UBERON:0001637!1.99e-07!42;UBERON:0003509!1.99e-07!42;UBERON:0004572!1.99e-07!42;UBERON:0000955!2.62e-07!69;UBERON:0006238!2.62e-07!69;UBERON:0002346!6.57e-07!90 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.27e-22,309;UBERON:0000483,1.16e-21,306;UBERON:0007524,2.70e-19,73;UBERON:0000486,4.37e-19,83;UBERON:0003077,1.02e-18,72;UBERON:0007285,1.02e-18,72;UBERON:0002329,2.26e-18,71;UBERON:0003059,2.26e-18,71;UBERON:0007282,2.26e-18,71;UBERON:0004290,2.26e-18,71;UBERON:0009618,2.26e-18,71;UBERON:0001134,1.80e-16,62;UBERON:0002036,1.80e-16,62;UBERON:0003082,1.80e-16,62;UBERON:0007503,3.62e-16,78;UBERON:0002385,1.89e-15,64;UBERON:0001015,1.89e-15,64;UBERON:0000383,1.89e-15,64;UBERON:0003104,5.26e-15,160;UBERON:0009142,5.26e-15,160;UBERON:0004121,7.67e-14,171;UBERON:0000924,7.67e-14,171;UBERON:0006601,7.67e-14,171;UBERON:0005256,6.08e-13,122;UBERON:0002100,3.03e-12,199;UBERON:0010314,2.19e-11,132;UBERON:0000490,6.05e-11,148;UBERON:0001016,3.22e-09,89;UBERON:0001017,3.78e-09,81;UBERON:0003102,4.25e-09,99;UBERON:0000922,6.16e-09,592;UBERON:0004111,6.49e-09,240;UBERON:0010371,8.16e-09,104;UBERON:0000025,1.97e-08,192;UBERON:0011216,2.05e-08,223;UBERON:0005423,2.42e-08,581;UBERON:0003075,1.11e-07,82;UBERON:0007284,1.11e-07,82;UBERON:0000955,1.25e-07,68;UBERON:0006238,1.25e-07,68;UBERON:0001637,1.92e-07,42;UBERON:0003509,1.92e-07,42;UBERON:0004572,1.92e-07,42;UBERON:0002050,2.07e-07,564;UBERON:0000923,4.68e-07,560;UBERON:0010316,4.68e-07,560;UBERON:0005291,4.68e-07,560;UBERON:0006598,4.68e-07,560;UBERON:0010317,4.68e-07,560;UBERON:0002532,4.68e-07,560;UBERON:0002346,4.85e-07,86;UBERON:0003056,5.96e-07,61 | |||
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| ||
|short_description=p1@PFN2 | |||
}} | }} |
Latest revision as of 22:56, 15 September 2015
Short description: | p1@PFN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PFN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000423691, ENST00000460404, ENST00000461930, ENST00000468323, ENST00000490975, ENST00000498169_5end |
EntrezGene: | PFN2 |
HGNC: | 8882 |
UniProt: | G5E9Q6C9J5V8F2Z3G0C9J2N0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.86e-22 | 250 |
electrically responsive cell | 1.03e-16 | 61 |
electrically active cell | 1.03e-16 | 61 |
muscle precursor cell | 1.20e-16 | 58 |
myoblast | 1.20e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.20e-16 | 58 |
muscle cell | 1.33e-16 | 55 |
smooth muscle cell | 1.36e-14 | 43 |
smooth muscle myoblast | 1.36e-14 | 43 |
vascular associated smooth muscle cell | 2.13e-11 | 32 |
mesodermal cell | 4.28e-11 | 121 |
fibroblast | 7.12e-11 | 76 |
ectodermal cell | 1.87e-10 | 72 |
neurectodermal cell | 2.06e-08 | 59 |