FFCP PHASE1:Hg19::chr2:234160287..234160335,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55054 | |EntrezGene=55054 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21498 | |HGNC=21498 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAF9,C9JAY7,C9JK97 | |UniProt=F8WAF9,C9JAY7,C9JK97 | ||
|association_with_transcript=0bp_to_ENST00000373525,ENST00000392021,ENST00000419681,ENST00000444735,ENST00000479942,ENST00000485623,uc002vud.3_5end | |association_with_transcript=0bp_to_ENST00000373525,ENST00000392021,ENST00000419681,ENST00000444735,ENST00000479942,ENST00000485623,uc002vud.3_5end | ||
|cluster_id=chr2:234160287..234160335,+ | |||
|coexpression_cluster_id=C443 | |||
|description=CAGE_peak_1_at_ATG16L1_5end | |description=CAGE_peak_1_at_ATG16L1_5end | ||
|id=chr2:234160287..234160335,+ | |id=chr2:234160287..234160335,+ | ||
|ontology_enrichment_celltype=CL:0000791!8.41e-12!18;CL:0000789!8.41e-12!18;CL:0002420!8.41e-12!18;CL:0002419!8.41e-12!18;CL:0000790!8.41e-12!18;CL:0000625!1.53e-08!11;CL:0000084!5.35e-08!25;CL:0000827!5.35e-08!25;CL:0000838!8.92e-08!52;CL:0000542!2.37e-07!53;CL:0000051!2.37e-07!53 | |ontology_enrichment_celltype=CL:0000791!8.41e-12!18;CL:0000789!8.41e-12!18;CL:0002420!8.41e-12!18;CL:0002419!8.41e-12!18;CL:0000790!8.41e-12!18;CL:0000625!1.53e-08!11;CL:0000084!5.35e-08!25;CL:0000827!5.35e-08!25;CL:0000838!8.92e-08!52;CL:0000542!2.37e-07!53;CL:0000051!2.37e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000791;6.40e-12;18!CL:0000789;6.40e-12;18!CL:0002419;6.40e-12;18!CL:0000625;1.43e-08;11!CL:0000084;5.39e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.41e-12,18;CL:0000789,8.41e-12,18;CL:0002420,8.41e-12,18;CL:0002419,8.41e-12,18;CL:0000790,8.41e-12,18;CL:0000625,1.53e-08,11;CL:0000084,5.35e-08,25;CL:0000827,5.35e-08,25;CL:0000838,8.92e-08,52;CL:0000542,2.37e-07,53;CL:0000051,2.37e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;6.40e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.68e-15!115;UBERON:0001893!6.59e-09!34;UBERON:0001049!8.93e-09!57;UBERON:0005068!8.93e-09!57;UBERON:0006241!8.93e-09!57;UBERON:0007135!8.93e-09!57;UBERON:0002791!1.64e-08!33;UBERON:0001869!2.64e-08!32;UBERON:0003080!3.61e-08!42;UBERON:0002780!4.09e-08!41;UBERON:0001890!4.09e-08!41;UBERON:0006240!4.09e-08!41;UBERON:0002616!5.11e-08!59;UBERON:0002020!9.92e-08!34;UBERON:0003528!9.92e-08!34;UBERON:0000955!1.71e-07!69;UBERON:0006238!1.71e-07!69;UBERON:0001950!2.35e-07!20;UBERON:0002619!4.87e-07!22;UBERON:0001017!6.18e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;4.88e-08;34!UBERON:0001869;1.00e-07;32!UBERON:0002791;1.40e-07;32!UBERON:0001950;1.93e-07;20!UBERON:0002619;3.29e-07;22!UBERON:0003528;6.87e-07;34!UBERON:0002020;6.87e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.23e-15,114;UBERON:0001893,6.59e-09,34;UBERON:0001049,1.04e-08,56;UBERON:0005068,1.04e-08,56;UBERON:0006241,1.04e-08,56;UBERON:0007135,1.04e-08,56;UBERON:0000073,1.30e-08,53;UBERON:0002616,1.30e-08,53;UBERON:0001869,2.64e-08,32;UBERON:0002791,3.79e-08,32;UBERON:0002780,4.09e-08,41;UBERON:0001890,4.09e-08,41;UBERON:0003080,4.09e-08,41;UBERON:0006240,4.09e-08,41;UBERON:0003528,9.92e-08,34;UBERON:0002020,9.92e-08,34;UBERON:0000955,2.02e-07,68;UBERON:0006238,2.02e-07,68;UBERON:0001950,2.35e-07,20;UBERON:0002619,4.87e-07,22;UBERON:0001017,7.36e-07,81 | |||
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| ||
|short_description=p1@ATG16L1 | |short_description=p1@ATG16L1 | ||
}} | }} |
Latest revision as of 22:46, 15 September 2015
Short description: | p1@ATG16L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATG16L1_5end |
Coexpression cluster: | C443_CD4_CD8_Natural_Eosinophils_Neutrophils_Peripheral_blood |
Association with transcript: | 0bp_to_ENST00000373525, ENST00000392021, ENST00000419681, ENST00000444735, ENST00000479942, ENST00000485623, uc002vud.3_5end |
EntrezGene: | ATG16L1 |
HGNC: | 21498 |
UniProt: | F8WAF9C9JAY7C9JK97 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.41e-12 | 18 |
alpha-beta T cell | 8.41e-12 | 18 |
immature T cell | 8.41e-12 | 18 |
mature T cell | 8.41e-12 | 18 |
immature alpha-beta T cell | 8.41e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.53e-08 | 11 |
T cell | 5.35e-08 | 25 |
pro-T cell | 5.35e-08 | 25 |
lymphoid lineage restricted progenitor cell | 8.92e-08 | 52 |
lymphocyte | 2.37e-07 | 53 |
common lymphoid progenitor | 2.37e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.23e-15 | 114 |
telencephalon | 6.59e-09 | 34 |
neural tube | 1.04e-08 | 56 |
neural rod | 1.04e-08 | 56 |
future spinal cord | 1.04e-08 | 56 |
neural keel | 1.04e-08 | 56 |
regional part of nervous system | 1.30e-08 | 53 |
regional part of brain | 1.30e-08 | 53 |
cerebral hemisphere | 2.64e-08 | 32 |
regional part of telencephalon | 3.79e-08 | 32 |
regional part of forebrain | 4.09e-08 | 41 |
forebrain | 4.09e-08 | 41 |
anterior neural tube | 4.09e-08 | 41 |
future forebrain | 4.09e-08 | 41 |
brain grey matter | 9.92e-08 | 34 |
gray matter | 9.92e-08 | 34 |
brain | 2.02e-07 | 68 |
future brain | 2.02e-07 | 68 |
neocortex | 2.35e-07 | 20 |
regional part of cerebral cortex | 4.87e-07 | 22 |
central nervous system | 7.36e-07 | 81 |