FFCP PHASE1:Hg19::chr4:144106194..144106203,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84640 | |EntrezGene=84640 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20067 | |HGNC=20067 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NB14 | |UniProt=Q8NB14 | ||
|association_with_transcript=96bp_to_ENST00000307017_5end | |association_with_transcript=96bp_to_ENST00000307017_5end | ||
|cluster_id=chr4:144106194..144106203,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_4_at_USP38_5end | |description=CAGE_peak_4_at_USP38_5end | ||
|id=chr4:144106194..144106203,+ | |id=chr4:144106194..144106203,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.57e-19!42;CL:0000860!6.35e-19!45;CL:0000766!2.37e-15!76;CL:0000557!8.30e-14!71;CL:0002009!1.14e-13!65;CL:0000763!3.95e-13!112;CL:0000049!3.95e-13!112;CL:0000839!5.40e-13!70;CL:0002194!1.64e-12!63;CL:0000576!1.64e-12!63;CL:0000040!1.64e-12!63;CL:0000559!1.64e-12!63;CL:0000738!1.95e-12!140;CL:0000037!5.23e-12!172;CL:0000566!5.23e-12!172;CL:0002032!7.03e-12!165;CL:0000837!7.03e-12!165;CL:0002031!1.07e-11!124;CL:0000988!4.97e-11!182;CL:0002087!7.13e-10!119 | |ontology_enrichment_celltype=CL:0002057!3.57e-19!42;CL:0000860!6.35e-19!45;CL:0000766!2.37e-15!76;CL:0000557!8.30e-14!71;CL:0002009!1.14e-13!65;CL:0000763!3.95e-13!112;CL:0000049!3.95e-13!112;CL:0000839!5.40e-13!70;CL:0002194!1.64e-12!63;CL:0000576!1.64e-12!63;CL:0000040!1.64e-12!63;CL:0000559!1.64e-12!63;CL:0000738!1.95e-12!140;CL:0000037!5.23e-12!172;CL:0000566!5.23e-12!172;CL:0002032!7.03e-12!165;CL:0000837!7.03e-12!165;CL:0002031!1.07e-11!124;CL:0000988!4.97e-11!182;CL:0002087!7.13e-10!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.08e-44;33!CL:0002057;1.08e-44;33!CL:0000473;2.22e-30;39!CL:0000234;2.22e-30;39!CL:0000576;1.55e-27;48!CL:0000766;1.65e-22;69!CL:0000094;2.96e-12;8!CL:0001014;6.98e-09;2!CL:0001016;6.98e-09;2!CL:0000081;8.04e-09;11!CL:0000763;3.32e-08;100!CL:0002087;1.09e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.24e-48,42;CL:0002057,1.24e-48,42;CL:0000473,9.00e-42,48;CL:0000234,9.00e-42,48;CL:0000766,1.07e-38,72;CL:0002009,6.84e-37,61;CL:0000557,4.80e-33,67;CL:0002194,3.57e-32,59;CL:0000576,3.57e-32,59;CL:0000040,3.57e-32,59;CL:0000559,3.57e-32,59;CL:0000763,1.76e-29,108;CL:0000049,1.76e-29,108;CL:0000839,3.63e-28,66;CL:0000738,4.26e-25,136;CL:0000037,1.35e-21,168;CL:0002032,2.17e-21,161;CL:0000837,2.17e-21,161;CL:0002031,3.72e-20,120;CL:0000988,4.53e-20,177;CL:0002087,5.77e-18,115;CL:0000094,2.55e-12,8;CL:0001014,5.75e-09,2;CL:0001016,5.75e-09,2;CL:0000081,7.23e-09,11;CL:0000134,7.49e-08,354;CL:0002320,1.56e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;9.80e-35;42!CL:0000049;4.08e-08;108 | |||
|ontology_enrichment_disease=DOID:305!1.53e-07!106 | |ontology_enrichment_disease=DOID:305!1.53e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.70e-12!80;UBERON:0001474!5.65e-11!86;UBERON:0002390!1.11e-10!102;UBERON:0003061!1.11e-10!102;UBERON:0002405!6.17e-09!115;UBERON:0004765!7.03e-09!101;UBERON:0001434!7.03e-09!101;UBERON:0002193!4.04e-08!112 | |ontology_enrichment_uberon=UBERON:0002371!3.70e-12!80;UBERON:0001474!5.65e-11!86;UBERON:0002390!1.11e-10!102;UBERON:0003061!1.11e-10!102;UBERON:0002405!6.17e-09!115;UBERON:0004765!7.03e-09!101;UBERON:0001434!7.03e-09!101;UBERON:0002193!4.04e-08!112 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.02e-31,76;UBERON:0001474,4.26e-28,82;UBERON:0002405,5.01e-26,93;UBERON:0004765,5.04e-25,90;UBERON:0002390,2.35e-24,98;UBERON:0003061,2.35e-24,98;UBERON:0001434,7.14e-22,100;UBERON:0002193,1.77e-21,108;UBERON:0002204,1.44e-12,167;UBERON:0003081,3.43e-09,203;UBERON:0002384,4.23e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0.136874425072884,0.251085279189606,0.229240217243854,0.410502947249729,0.157421562627358,1.18009283054671,0.383829398097213,3.2511385896376,0,0,0.369754010166788,0.309868802321207,0.568676929949686,1.46800219667424,2.76997704265939,3.40925560699241,3.03815219002193,0,0,0,0.872389432677388,2.26725566213286,1.94067248950253,0.929716147622738,2.46700732813095,1.85823822537062,4.31538588483226,4.61089271752381,3.54723344832878,3.7922024881028,3.22742341791913,0,0.941211697713023,1.63743690034707,0.898893937780338,1.22433556948361,2.24650318953266,2.55734850319616,0.329851300186716,4.58766412529753,1.70489900213078,1.7412554317715,0.56738522469114,0.622822248995575,6.02996796616184,8.34372669472322,2.38907729175628,0.605399502633369,2.57794345191295,1.26584954976354,0.211255286311942,0.212604299965044,0.838634582033504,0.561643155732475,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.590129310341499,0,0.205601498999509,0,0,0,0,0,0,0.221533894583621,0,0.512365278902701,0.260118695119756,0.493313713811028,0,0,0.14828656316206,0,0,0.226618685395132,0.383220493601921,0,0,0.318565414324097,0,0,0,0,0,0,0,0.201606743224732,0.802320587350522,0.579297615531196,0,0,0.12786256184353,0.361439152384566,0.50133791063589,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0.324547393654683,0.348259474598534,0.26591592103773,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,3.87780264148325,0,0,0.12663051166458,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0,0.269421344139376,0,0,0,0,0,0,0.298897361103602,0,0,0.140450806702248,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0.300091096084402,0.103052529238439,0.515281080091258,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0.773043412653187,0.545492241181669,0.286804595389004,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.118306800039844,0.674338760312407,0,0.441175890929576,0.217879444092406,0.474541238222193,0,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0.548751427043128,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0.790204397959275,0,0,0,0.297262324577456,0.93733833986777,0.16798212819886,0.141775097242386,0.358234090811393,0,0,0,0.528290604079356,0.621984346622316,0.144119953416961,0.50496973370552,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0.871533458600294,0.199945982364114,0,0,0,0.239624855491583,0,1.42636905040718,0.144781306667579,0,0.179060963239896,1.45710687191585,0,0.646882724578552,0.898401253958239,0,0,0,0,0.637938751653163,2.99602809578873,0,2.90090859405225,0.24538298343828,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0.413536052245775,0,0.106727557803444,0.303127571446259,1.66435439510497,0,0,0,0,0.384417447767103,0,0,1.48418066444991,0.154209693802656,0.177561725313127,0.328508624055237,0,0,0.241718899183244,0.601519410909855,0.920809889358963,0,0.182091168006717,0.131124414959424,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0.438519753291869,0,0,0,0.325378394664303,0.309123034943167,0,0.41254749960294,0,0,0,0,0,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0.826424576804891,0.768760269460425,0.765676274967505,0.708104465988849,0,0.31481234683064,0,0,0,0,0.18532421910392,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0.282810863907425,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0.281695602532241,0,0.0982490410131212,0.35667105148125,0.709522128141196,0,0.329294892959902,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.886860307073351,0,0,0,0,0,0,0.648473311192717,0,0,0.213648142254946,0.962479855263359,0,0,0,0.213425530045242,0,0,0.191505370132367,0.846694330895531,0.324621940274555,0.561594356226918,0.684704037099577,0,0,0.169291777801603,0,0.201799707191048,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0.99921590399346,1.4098700508785,0.561421621224659,0,0,0.111443384277478,0.568272293612826,0.95497793895076,0,0,0.994147647766298,0,0.222617410045812,0.659215496907038,0.211125408127993,0,0.276283915531148,0,0.102268682502155,0.984678443688556,0,0.988551862620595,0.716084698702437,0,0,0,0,0,0.278304294485554,0,0,0.262379999988587,0,0.227586896570999,0.254253650292766,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0.227884111694002,0,0.179515288819544,0,2.23300811812344,0.274792780205587,0,1.02193298195737,0.31396051279005,0,0,0,0.335643173951685,0.189753732724185,0,0.210998064528027,0.489698424477443,0.424059214301822,0,0,0.619202951523374,0.611030144933625,0.593042257361244,0.123563938946503,0.104421949505455,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,3.00646838828985,0,0.66465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| ||
|short_description=p4@USP38 | |short_description=p4@USP38 | ||
}} | }} |
Latest revision as of 21:24, 15 September 2015
Short description: | p4@USP38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_USP38_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 96bp_to_ENST00000307017_5end |
EntrezGene: | USP38 |
HGNC: | 20067 |
UniProt: | Q8NB14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.24e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.24e-48 | 42 |
defensive cell | 9.00e-42 | 48 |
phagocyte | 9.00e-42 | 48 |
myeloid leukocyte | 1.07e-38 | 72 |
macrophage dendritic cell progenitor | 6.84e-37 | 61 |
granulocyte monocyte progenitor cell | 4.80e-33 | 67 |
monopoietic cell | 3.57e-32 | 59 |
monocyte | 3.57e-32 | 59 |
monoblast | 3.57e-32 | 59 |
promonocyte | 3.57e-32 | 59 |
myeloid cell | 1.76e-29 | 108 |
common myeloid progenitor | 1.76e-29 | 108 |
myeloid lineage restricted progenitor cell | 3.63e-28 | 66 |
leukocyte | 4.26e-25 | 136 |
hematopoietic stem cell | 1.35e-21 | 168 |
hematopoietic oligopotent progenitor cell | 2.17e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.17e-21 | 161 |
hematopoietic lineage restricted progenitor cell | 3.72e-20 | 120 |
hematopoietic cell | 4.53e-20 | 177 |
nongranular leukocyte | 5.77e-18 | 115 |
granulocyte | 2.55e-12 | 8 |
CD1a-positive Langerhans cell | 5.75e-09 | 2 |
immature CD1a-positive Langerhans cell | 5.75e-09 | 2 |
blood cell | 7.23e-09 | 11 |
mesenchymal cell | 7.49e-08 | 354 |
connective tissue cell | 1.56e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.02e-31 | 76 |
bone element | 4.26e-28 | 82 |
immune system | 5.01e-26 | 93 |
skeletal element | 5.04e-25 | 90 |
hematopoietic system | 2.35e-24 | 98 |
blood island | 2.35e-24 | 98 |
skeletal system | 7.14e-22 | 100 |
hemolymphoid system | 1.77e-21 | 108 |
musculoskeletal system | 1.44e-12 | 167 |
lateral plate mesoderm | 3.43e-09 | 203 |
connective tissue | 4.23e-07 | 371 |