FFCP PHASE1:Hg19::chr22:50746027..50746082,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23654 | |EntrezGene=23654 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9104 | |HGNC=9104 | ||
|TSSclassifier=strong | |||
|UniProt=A6QRH1,O15031 | |UniProt=A6QRH1,O15031 | ||
|association_with_transcript=0bp_to_ENST00000425954,ENST00000449103_5end | |association_with_transcript=0bp_to_ENST00000425954,ENST00000449103_5end | ||
|cluster_id=chr22:50746027..50746082,- | |||
|description=CAGE_peak_1_at_PLXNB2_5end | |description=CAGE_peak_1_at_PLXNB2_5end | ||
|id=chr22:50746027..50746082,- | |id=chr22:50746027..50746082,- | ||
|ontology_enrichment_celltype=CL:0002371!5.25e-20!591;CL:0000144!3.78e-18!625;CL:0000548!7.17e-16!679;CL:0000004!7.17e-16!679;CL:0000255!7.17e-16!679;CL:0002057!1.24e-15!42;CL:0002194!4.04e-15!63;CL:0000576!4.04e-15!63;CL:0000040!4.04e-15!63;CL:0000559!4.04e-15!63;CL:0000012!5.45e-15!682;CL:0002009!3.61e-14!65;CL:0000860!3.85e-13!45;CL:0000557!7.10e-11!71;CL:0000839!3.98e-10!70;CL:0000766!1.16e-08!76;CL:0000055!1.62e-08!180;CL:0000063!1.79e-08!578;CL:1000497!3.46e-07!18;CL:0002518!3.46e-07!18;CL:0000183!4.08e-07!59;CL:1000449!9.55e-07!16 | |ontology_enrichment_celltype=CL:0002371!5.25e-20!591;CL:0000144!3.78e-18!625;CL:0000548!7.17e-16!679;CL:0000004!7.17e-16!679;CL:0000255!7.17e-16!679;CL:0002057!1.24e-15!42;CL:0002194!4.04e-15!63;CL:0000576!4.04e-15!63;CL:0000040!4.04e-15!63;CL:0000559!4.04e-15!63;CL:0000012!5.45e-15!682;CL:0002009!3.61e-14!65;CL:0000860!3.85e-13!45;CL:0000557!7.10e-11!71;CL:0000839!3.98e-10!70;CL:0000766!1.16e-08!76;CL:0000055!1.62e-08!180;CL:0000063!1.79e-08!578;CL:1000497!3.46e-07!18;CL:0002518!3.46e-07!18;CL:0000183!4.08e-07!59;CL:1000449!9.55e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.24e-10;33!CL:0002057;3.24e-10;33!CL:0000576;6.17e-10;48!CL:0000473;6.39e-10;39!CL:0000234;6.39e-10;39!CL:1000497;4.07e-07;17!CL:0002518;4.07e-07;17!CL:1000507;9.46e-07;10!CL:1000494;9.46e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,4.36e-17,59;CL:0000576,4.36e-17,59;CL:0000040,4.36e-17,59;CL:0000559,4.36e-17,59;CL:0000473,8.07e-17,48;CL:0000234,8.07e-17,48;CL:0002009,5.41e-16,61;CL:0000860,1.24e-15,42;CL:0002057,1.24e-15,42;CL:0000557,3.04e-12,67;CL:0000839,2.04e-11,66;CL:0000766,8.86e-10,72;CL:1000497,4.31e-07,17;CL:0002518,4.31e-07,17;CL:0000723,7.93e-07,433;CL:0000057,8.86e-07,76;CL:0000048,9.01e-07,427;CL:1000507,9.43e-07,10;CL:1000494,9.43e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;2.26e-11;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!5.21e-16!448;UBERON:0004120!5.21e-16!448;UBERON:0006603!5.21e-16!448;UBERON:0000468!3.05e-15!659;UBERON:0002204!1.33e-14!167;UBERON:0000467!3.66e-14!625;UBERON:0003081!5.31e-14!216;UBERON:0000480!5.68e-14!626;UBERON:0000062!8.89e-12!511;UBERON:0002050!6.31e-11!605;UBERON:0005423!6.31e-11!605;UBERON:0002371!8.77e-11!80;UBERON:0000923!1.18e-10!604;UBERON:0005291!1.18e-10!604;UBERON:0006598!1.18e-10!604;UBERON:0002532!1.18e-10!604;UBERON:0001474!6.95e-10!86;UBERON:0000922!7.30e-10!612;UBERON:0004765!2.11e-09!101;UBERON:0001434!2.11e-09!101;UBERON:0005256!2.42e-08!143;UBERON:0002100!5.21e-08!216;UBERON:0002405!1.05e-07!115;UBERON:0006554!2.63e-07!44;UBERON:0001008!4.60e-07!45;UBERON:0003887!6.03e-07!21;UBERON:0009569!6.21e-07!113;UBERON:0002417!6.21e-07!61;UBERON:0000916!6.21e-07!61;UBERON:0000080!9.17e-07!18;UBERON:0002120!9.17e-07!18;UBERON:0004875!9.17e-07!18;UBERON:0005721!9.17e-07!18;UBERON:0005754!9.17e-07!18;UBERON:0007297!9.17e-07!18;UBERON:0006555!9.39e-07!17;UBERON:0005103!9.39e-07!17;UBERON:0000083!9.39e-07!17;UBERON:0009201!9.39e-07!17;UBERON:0004819!9.39e-07!17;UBERON:0006553!9.39e-07!17;UBERON:0003074!9.39e-07!17;UBERON:0003060!9.39e-07!17;UBERON:0004211!9.55e-07!16;UBERON:0001285!9.55e-07!16;UBERON:0007684!9.55e-07!16;UBERON:0003220!9.55e-07!16;UBERON:0004208!9.55e-07!16 | |ontology_enrichment_uberon=UBERON:0000926!5.21e-16!448;UBERON:0004120!5.21e-16!448;UBERON:0006603!5.21e-16!448;UBERON:0000468!3.05e-15!659;UBERON:0002204!1.33e-14!167;UBERON:0000467!3.66e-14!625;UBERON:0003081!5.31e-14!216;UBERON:0000480!5.68e-14!626;UBERON:0000062!8.89e-12!511;UBERON:0002050!6.31e-11!605;UBERON:0005423!6.31e-11!605;UBERON:0002371!8.77e-11!80;UBERON:0000923!1.18e-10!604;UBERON:0005291!1.18e-10!604;UBERON:0006598!1.18e-10!604;UBERON:0002532!1.18e-10!604;UBERON:0001474!6.95e-10!86;UBERON:0000922!7.30e-10!612;UBERON:0004765!2.11e-09!101;UBERON:0001434!2.11e-09!101;UBERON:0005256!2.42e-08!143;UBERON:0002100!5.21e-08!216;UBERON:0002405!1.05e-07!115;UBERON:0006554!2.63e-07!44;UBERON:0001008!4.60e-07!45;UBERON:0003887!6.03e-07!21;UBERON:0009569!6.21e-07!113;UBERON:0002417!6.21e-07!61;UBERON:0000916!6.21e-07!61;UBERON:0000080!9.17e-07!18;UBERON:0002120!9.17e-07!18;UBERON:0004875!9.17e-07!18;UBERON:0005721!9.17e-07!18;UBERON:0005754!9.17e-07!18;UBERON:0007297!9.17e-07!18;UBERON:0006555!9.39e-07!17;UBERON:0005103!9.39e-07!17;UBERON:0000083!9.39e-07!17;UBERON:0009201!9.39e-07!17;UBERON:0004819!9.39e-07!17;UBERON:0006553!9.39e-07!17;UBERON:0003074!9.39e-07!17;UBERON:0003060!9.39e-07!17;UBERON:0004211!9.55e-07!16;UBERON:0001285!9.55e-07!16;UBERON:0007684!9.55e-07!16;UBERON:0003220!9.55e-07!16;UBERON:0004208!9.55e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.96e-07;30!UBERON:0001008;5.96e-07;30!UBERON:0004211;9.46e-07;10!UBERON:0009773;9.46e-07;10!UBERON:0001231;9.46e-07;10!UBERON:0004810;9.46e-07;10 | |||
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| ||
|short_description=p1@PLXNB2 | |short_description=p1@PLXNB2 | ||
}} | }} |
Latest revision as of 20:08, 15 September 2015
Short description: | p1@PLXNB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PLXNB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000425954, ENST00000449103_5end |
EntrezGene: | PLXNB2 |
HGNC: | 9104 |
UniProt: | A6QRH1O15031 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 4.36e-17 | 59 |
monocyte | 4.36e-17 | 59 |
monoblast | 4.36e-17 | 59 |
promonocyte | 4.36e-17 | 59 |
defensive cell | 8.07e-17 | 48 |
phagocyte | 8.07e-17 | 48 |
macrophage dendritic cell progenitor | 5.41e-16 | 61 |
classical monocyte | 1.24e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.24e-15 | 42 |
granulocyte monocyte progenitor cell | 3.04e-12 | 67 |
myeloid lineage restricted progenitor cell | 2.04e-11 | 66 |
myeloid leukocyte | 8.86e-10 | 72 |
kidney cell | 4.31e-07 | 17 |
kidney epithelial cell | 4.31e-07 | 17 |
somatic stem cell | 7.93e-07 | 433 |
fibroblast | 8.86e-07 | 76 |
multi fate stem cell | 9.01e-07 | 427 |
kidney tubule cell | 9.43e-07 | 10 |
nephron tubule epithelial cell | 9.43e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 7.02e-17 | 315 |
mesoderm-derived structure | 7.02e-17 | 315 |
presumptive mesoderm | 7.02e-17 | 315 |
musculoskeletal system | 2.93e-16 | 167 |
bone marrow | 4.99e-12 | 76 |
lateral plate mesoderm | 5.22e-12 | 203 |
skeletal element | 1.44e-11 | 90 |
developing anatomical structure | 1.94e-11 | 581 |
bone element | 5.45e-11 | 82 |
skeletal system | 7.23e-11 | 100 |
embryo | 8.42e-10 | 592 |
immune system | 4.48e-09 | 93 |
embryonic structure | 1.19e-08 | 564 |
urinary system structure | 1.91e-08 | 47 |
trunk | 2.15e-08 | 199 |
germ layer | 2.36e-08 | 560 |
germ layer / neural crest | 2.36e-08 | 560 |
embryonic tissue | 2.36e-08 | 560 |
presumptive structure | 2.36e-08 | 560 |
germ layer / neural crest derived structure | 2.36e-08 | 560 |
epiblast (generic) | 2.36e-08 | 560 |
renal system | 3.51e-08 | 48 |
mesenchyme | 3.61e-08 | 160 |
entire embryonic mesenchyme | 3.61e-08 | 160 |
hematopoietic system | 5.32e-07 | 98 |
blood island | 5.32e-07 | 98 |
subdivision of trunk | 7.80e-07 | 112 |
abdominal segment of trunk | 8.52e-07 | 60 |
abdomen | 8.52e-07 | 60 |
nephron tubule epithelium | 9.43e-07 | 10 |