FFCP PHASE1:Hg19::chr12:102133233..102133245,-: Difference between revisions
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|id=chr12:102133233..102133245,-
|short_description=p1@SYCP3
|description=CAGE_peak_1_at_SYCP3_5end
|association_with_transcript=1bp_to_ENST00000392927,uc001tiq.2,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50511 | |EntrezGene=50511 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18130 | |HGNC=18130 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IZU3 | |UniProt=Q8IZU3 | ||
|association_with_transcript=1bp_to_ENST00000392927,uc001tiq.2,uc001tir.2_5end | |||
|cluster_id=chr12:102133233..102133245,- | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_1_at_SYCP3_5end | |||
|id=chr12:102133233..102133245,- | |||
|ontology_enrichment_celltype=CL:0000039!5.03e-33!7;CL:0000586!5.03e-33!7;CL:0002322!1.10e-25!5 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.88e-56;7!CL:0000586;1.88e-56;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.88e-56,7;CL:0000586,1.88e-56,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.93e-88;10!UBERON:0005564;1.93e-88;10!UBERON:0006603;8.28e-08;65 | |||
|ontology_enrichment_disease=DOID:3095!2.50e-16!22;DOID:2994!2.50e-16!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.10e-28;22!DOID:2994;3.10e-28;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.10e-28,22;DOID:2994,3.10e-28,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.64e-64!8;UBERON:0003135!1.13e-46!11;UBERON:0000991!2.07e-24!21;UBERON:0009196!2.07e-24!21;UBERON:0009117!2.07e-24!21;UBERON:0005564!2.07e-24!21;UBERON:0004176!2.71e-23!22;UBERON:0003101!2.71e-23!22;UBERON:0000079!2.71e-23!22;UBERON:0002323!5.05e-11!46;UBERON:0003133!1.50e-10!48;UBERON:0004458!2.49e-10!49;UBERON:0005156!1.58e-08!59;UBERON:0000990!1.58e-08!59;UBERON:0003886!5.78e-08!63;UBERON:0002553!3.91e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.10e-110;8!UBERON:0003135;1.88e-80;11!UBERON:0000991;2.31e-42;21!UBERON:0003101;1.87e-40;22!UBERON:0000079;1.87e-40;22!UBERON:0002323;4.31e-16;45!UBERON:0003133;1.16e-14;44!UBERON:0002553;7.84e-11;52!UBERON:0005156;6.37e-09;59!UBERON:0000990;6.37e-09;59!UBERON:0004458;1.12e-08;48!UBERON:0000922;5.09e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.10e-110,8;UBERON:0003135,1.88e-80,11;UBERON:0000991,2.31e-42,21;UBERON:0009196,2.31e-42,21;UBERON:0009117,2.31e-42,21;UBERON:0005564,2.31e-42,21;UBERON:0004176,1.87e-40,22;UBERON:0003101,1.87e-40,22;UBERON:0000079,1.87e-40,22;UBERON:0002323,1.67e-19,46;UBERON:0003133,1.06e-18,48;UBERON:0004458,2.54e-18,49;UBERON:0003886,1.21e-16,54;UBERON:0005156,3.01e-15,59;UBERON:0000990,3.01e-15,59;UBERON:0002553,9.41e-15,61 | |||
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|short_description=p1@SYCP3 | |||
}} | }} |
Latest revision as of 19:35, 15 September 2015
Short description: | p1@SYCP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYCP3_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | 1bp_to_ENST00000392927, uc001tiq.2, uc001tir.2_5end |
EntrezGene: | SYCP3 |
HGNC: | 18130 |
UniProt: | Q8IZU3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.88e-56 | 7 |
germ cell | 1.88e-56 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 2.10e-110 | 8 |
male reproductive organ | 1.88e-80 | 11 |
gonad | 2.31e-42 | 21 |
indifferent external genitalia | 2.31e-42 | 21 |
indifferent gonad | 2.31e-42 | 21 |
gonad primordium | 2.31e-42 | 21 |
external genitalia | 1.87e-40 | 22 |
male organism | 1.87e-40 | 22 |
male reproductive system | 1.87e-40 | 22 |
body cavity | 1.67e-19 | 46 |
reproductive organ | 1.06e-18 | 48 |
body cavity or lining | 2.54e-18 | 49 |
body cavity precursor | 1.21e-16 | 54 |
reproductive structure | 3.01e-15 | 59 |
reproductive system | 3.01e-15 | 59 |
anatomical cavity | 9.41e-15 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.10e-28 | 22 |
germ cell cancer | 3.10e-28 | 22 |