FFCP PHASE1:Hg19::chr5:1445539..1445558,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:1445539..1445558,-
|short_description=p1@SLC6A3
|description=CAGE_peak_1_at_SLC6A3_5end
|association_with_transcript=0bp_to_ENST00000270349,NM_001044_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6531 | |EntrezGene=6531 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11049 | |HGNC=11049 | ||
|TSSclassifier=strong | |||
|UniProt=Q01959,A2RUN4 | |UniProt=Q01959,A2RUN4 | ||
|association_with_transcript=0bp_to_ENST00000270349,NM_001044_5end | |||
|cluster_id=chr5:1445539..1445558,- | |||
|coexpression_cluster_id=C97 | |||
|description=CAGE_peak_1_at_SLC6A3_5end | |||
|id=chr5:1445539..1445558,- | |||
|ontology_enrichment_celltype=CL:0000039!8.99e-12!7;CL:0000586!8.99e-12!7;CL:0002322!1.07e-11!5;CL:0002274!1.51e-08!5;CL:0000457!1.51e-08!5;CL:0002191!1.51e-08!5;CL:0000097!1.51e-08!5;CL:0000831!1.51e-08!5;CL:0002028!1.51e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.90e-26;2!CL:0000242;1.90e-26;2!CL:0000097;7.94e-23;5!CL:0002553;8.05e-14;1!CL:0000163;5.64e-13;9!CL:0000312;3.54e-11;5!CL:0000240;1.83e-09;6!CL:0000311;1.83e-09;6!CL:0000079;1.83e-09;6!CL:0000237;1.83e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.16e-26,2;CL:0000097,7.94e-23,5;CL:0002028,7.94e-23,5;CL:0002553,8.58e-14,1;CL:0000163,5.65e-13,9;CL:0000312,3.72e-11,5;CL:0000240,1.91e-09,6;CL:0000311,1.91e-09,6;CL:0000079,1.91e-09,6;CL:0000237,1.91e-09,6;CL:0000036,1.91e-09,6;CL:0000357,1.91e-09,6;CL:0000114,1.91e-09,6 | |||
|ontology_enrichment_development_v019=CL:0000357;1.83e-09;6!CL:0000114;1.83e-09;6!UBERON:0008947;4.25e-07;29!UBERON:0001041;7.23e-07;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1325;4.27e-08;7!DOID:3904;4.27e-08;7!DOID:1324;4.38e-08;15!DOID:0050615;1.30e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,4.27e-08,7;DOID:3904,4.27e-08,7;DOID:1324,4.43e-08,15;DOID:0050615,1.32e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.59e-08!115;UBERON:0000473!4.91e-07!8;UBERON:0003135!7.58e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;8.05e-14;1!UBERON:0009661;8.05e-14;1!UBERON:0002950;8.05e-14;1!UBERON:0001891;8.05e-14;1!UBERON:0002048;2.70e-09;22!UBERON:0000117;2.70e-09;22!UBERON:0000171;2.70e-09;22!UBERON:0000170;2.70e-09;22!UBERON:0002370;1.12e-07;2!UBERON:0005058;1.12e-07;2!UBERON:0009113;1.12e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.10e-13,1;UBERON:0009661,1.10e-13,1;UBERON:0002950,1.10e-13,1;UBERON:0001891,1.10e-13,1;UBERON:0009616,1.10e-13,1;UBERON:0010286,1.10e-13,1;UBERON:0002048,2.85e-09,22;UBERON:0000117,2.85e-09,22;UBERON:0000171,2.85e-09,22;UBERON:0000170,2.85e-09,22;UBERON:0005597,2.85e-09,22;UBERON:0000118,2.85e-09,22;UBERON:0004807,2.05e-07,28 | |||
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| ||
|short_description=p1@SLC6A3 | |||
}} | }} |
Latest revision as of 19:30, 15 September 2015
Short description: | p1@SLC6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC6A3_5end |
Coexpression cluster: | C97_small_smallcell_gastrointestinal_argyrophil_putamen_duodenum_brain |
Association with transcript: | 0bp_to_ENST00000270349, NM_001044_5end |
EntrezGene: | SLC6A3 |
HGNC: | 11049 |
UniProt: | Q01959A2RUN4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.16e-26 | 2 |
mast cell | 7.94e-23 | 5 |
basophil mast progenitor cell | 7.94e-23 | 5 |
lung fibroblast | 8.58e-14 | 1 |
endocrine cell | 5.65e-13 | 9 |
keratinocyte | 3.72e-11 | 5 |
stratified squamous epithelial cell | 1.91e-09 | 6 |
keratin accumulating cell | 1.91e-09 | 6 |
stratified epithelial cell | 1.91e-09 | 6 |
keratinizing barrier epithelial cell | 1.91e-09 | 6 |
epithelial fate stem cell | 1.91e-09 | 6 |
stratified epithelial stem cell | 1.91e-09 | 6 |
surface ectodermal cell | 1.91e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.10e-13 | 1 |
midbrain nucleus | 1.10e-13 | 1 |
regional part of midbrain | 1.10e-13 | 1 |
midbrain | 1.10e-13 | 1 |
presumptive midbrain | 1.10e-13 | 1 |
midbrain neural tube | 1.10e-13 | 1 |
lung | 2.85e-09 | 22 |
respiratory tube | 2.85e-09 | 22 |
respiration organ | 2.85e-09 | 22 |
pair of lungs | 2.85e-09 | 22 |
lung primordium | 2.85e-09 | 22 |
lung bud | 2.85e-09 | 22 |
respiratory system epithelium | 2.05e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 4.27e-08 | 7 |
bronchogenic carcinoma | 4.27e-08 | 7 |
lung cancer | 4.43e-08 | 15 |
respiratory system cancer | 1.32e-07 | 16 |