FFCP PHASE1:Hg19::chr3:147138953..147138965,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7545 | |EntrezGene=7545 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12872 | |HGNC=12872 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-148bp_to_ENST00000474034_5end | |||
|cluster_id=chr3:147138953..147138965,+ | |||
|description=CAGE_peak_19_at_ZIC1_5end | |||
|id=chr3:147138953..147138965,+ | |||
|ontology_enrichment_celltype=CL:0000128!8.10e-17!7;CL:0000126!8.10e-17!7;CL:0000127!8.10e-17!7;CL:0002453!8.10e-17!7;CL:0002603!1.75e-15!3;CL:0000064!4.13e-15!3;CL:0005012!4.13e-15!3;CL:0000067!4.13e-15!3;CL:0002304!4.13e-15!3;CL:0000708!4.13e-15!3;CL:0000133!5.33e-12!59;CL:0002575!4.79e-11!2;CL:0000221!5.05e-11!71;CL:0002549!9.87e-11!2;CL:0002319!6.97e-10!25;CL:0000075!9.53e-10!27;CL:0002322!5.53e-09!5;CL:0000710!5.79e-08!20;CL:0002590!1.96e-07!3;CL:0002605!6.93e-07!3;CL:0000243!9.48e-07!15;CL:0000125!9.48e-07!15;CL:0000030!9.48e-07!15;CL:0000339!9.48e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002575;2.27e-37;2!CL:0002603;2.64e-25;3!CL:0000669;2.97e-19;4!CL:0000128;1.97e-11;7!CL:0000126;1.97e-11;7!CL:0000127;1.97e-11;7!CL:0002549;1.97e-10;2!CL:0000064;2.25e-07;3!CL:0000067;2.25e-07;3!CL:0005012;2.25e-07;3!CL:0002304;2.25e-07;3!CL:0000708;2.97e-07;3!CL:0002590;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,2.73e-37,2;CL:0002603,2.99e-25,3;CL:0000669,3.26e-19,4;CL:0000128,2.07e-11,7;CL:0000126,2.07e-11,7;CL:0000127,2.07e-11,7;CL:0002453,2.07e-11,7;CL:0002549,1.72e-10,2;CL:0000133,1.69e-07,59;CL:0000064,2.19e-07,3;CL:0000067,2.19e-07,3;CL:0005012,2.19e-07,3;CL:0002304,2.19e-07,3;CL:0002590,2.97e-07,3;CL:0000708,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.97e-07;3!UBERON:0003057;2.97e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.08e-31!82;UBERON:0005743!3.83e-29!86;UBERON:0002200!8.47e-27!11;UBERON:0006876!8.47e-27!11;UBERON:0000073!7.03e-26!94;UBERON:0001016!7.03e-26!94;UBERON:0002616!7.66e-26!59;UBERON:0003075!1.65e-24!86;UBERON:0007284!1.65e-24!86;UBERON:0000955!2.02e-23!69;UBERON:0006238!2.02e-23!69;UBERON:0002346!3.46e-23!90;UBERON:0004121!8.77e-22!169;UBERON:0000924!4.00e-21!173;UBERON:0006601!4.00e-21!173;UBERON:0000033!1.82e-20!123;UBERON:0002037!9.24e-20!6;UBERON:0006215!9.24e-20!6;UBERON:0000488!2.36e-19!4;UBERON:0000153!3.02e-19!129;UBERON:0007811!3.02e-19!129;UBERON:0001049!1.08e-18!57;UBERON:0005068!1.08e-18!57;UBERON:0006241!1.08e-18!57;UBERON:0007135!1.08e-18!57;UBERON:0005284!8.10e-16!5;UBERON:0003210!4.13e-15!3;UBERON:0001778!4.13e-15!3;UBERON:0001775!4.13e-15!3;UBERON:0003056!7.48e-15!61;UBERON:0003076!1.18e-14!15;UBERON:0003057!1.18e-14!15;UBERON:0007625!1.34e-14!11;UBERON:0004733!1.08e-13!12;UBERON:0002028!1.08e-13!12;UBERON:0007277!1.08e-13!12;UBERON:0002680!4.34e-13!9;UBERON:0001895!4.34e-13!9;UBERON:0010092!4.34e-13!9;UBERON:0002203!6.09e-13!6;UBERON:0001768!6.09e-13!6;UBERON:0004732!1.37e-12!13;UBERON:0001801!2.43e-11!14;UBERON:0002791!4.04e-11!33;UBERON:0001893!9.46e-11!34;UBERON:0003947!9.87e-11!2;UBERON:0005629!9.87e-11!2;UBERON:0005358!9.87e-11!2;UBERON:0001886!9.87e-11!2;UBERON:0004086!9.87e-11!2;UBERON:0005282!9.87e-11!2;UBERON:0005281!9.87e-11!2;UBERON:0000956!1.04e-09!25;UBERON:0000203!1.04e-09!25;UBERON:0001869!2.65e-09!32;UBERON:0002020!1.10e-08!34;UBERON:0003528!1.10e-08!34;UBERON:0002780!1.16e-08!41;UBERON:0001890!1.16e-08!41;UBERON:0006240!1.16e-08!41;UBERON:0003080!2.02e-08!42;UBERON:0000019!3.41e-08!19;UBERON:0000047!3.41e-08!19;UBERON:0004088!3.41e-08!19;UBERON:0003072!3.41e-08!19;UBERON:0003071!3.41e-08!19;UBERON:0004128!3.41e-08!19;UBERON:0000119!5.71e-08!312;UBERON:0000970!9.40e-08!20;UBERON:0002300!2.02e-07!3;UBERON:0002104!2.35e-07!21;UBERON:0001456!2.35e-07!21;UBERON:0001950!4.72e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;2.04e-15;11!UBERON:0005284;2.25e-15;5!UBERON:0002037;3.55e-13;6!UBERON:0005629;1.97e-10;2!UBERON:0005358;1.97e-10;2!UBERON:0001886;1.97e-10;2!UBERON:0004086;1.97e-10;2!UBERON:0005282;1.97e-10;2!UBERON:0005281;1.97e-10;2!UBERON:0002680;4.25e-09;9!UBERON:0001895;4.25e-09;9!UBERON:0001778;2.25e-07;3!UBERON:0001775;2.25e-07;3!UBERON:0002240;2.97e-07;3!UBERON:0005174;2.97e-07;3!UBERON:0003210;2.97e-07;3!UBERON:0001137;2.97e-07;3!UBERON:0004733;4.85e-07;12!UBERON:0002028;4.85e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.85e-15,11;UBERON:0005284,2.02e-15,5;UBERON:0002037,3.77e-13,6;UBERON:0006215,3.77e-13,6;UBERON:0003076,1.70e-11,15;UBERON:0003057,1.70e-11,15;UBERON:0005629,1.72e-10,2;UBERON:0005358,1.72e-10,2;UBERON:0001886,1.72e-10,2;UBERON:0004086,1.72e-10,2;UBERON:0005282,1.72e-10,2;UBERON:0005281,1.72e-10,2;UBERON:0002680,4.43e-09,9;UBERON:0001895,4.43e-09,9;UBERON:0010092,4.43e-09,9;UBERON:0001017,1.11e-07,81;UBERON:0001778,2.19e-07,3;UBERON:0001775,2.19e-07,3;UBERON:0002240,3.16e-07,3;UBERON:0005174,3.16e-07,3;UBERON:0001137,3.16e-07,3;UBERON:0003210,3.35e-07,3;UBERON:0004733,5.00e-07,12;UBERON:0002028,5.00e-07,12;UBERON:0007277,5.00e-07,12;UBERON:0001016,6.61e-07,89 | |||
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|short_description=p19@ZIC1 | |||
}} | }} |
Latest revision as of 19:24, 15 September 2015
Short description: | p19@ZIC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_ZIC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -148bp_to_ENST00000474034_5end |
EntrezGene: | ZIC1 |
HGNC: | 12872 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 2.73e-37 | 2 |
astrocyte of the cerebellum | 2.99e-25 | 3 |
pericyte cell | 3.26e-19 | 4 |
oligodendrocyte | 2.07e-11 | 7 |
macroglial cell | 2.07e-11 | 7 |
astrocyte | 2.07e-11 | 7 |
oligodendrocyte precursor cell | 2.07e-11 | 7 |
fibroblast of choroid plexus | 1.72e-10 | 2 |
neurectodermal cell | 1.69e-07 | 59 |
ciliated cell | 2.19e-07 | 3 |
ciliated epithelial cell | 2.19e-07 | 3 |
multi-ciliated epithelial cell | 2.19e-07 | 3 |
non-pigmented ciliary epithelial cell | 2.19e-07 | 3 |
smooth muscle cell of the brain vasculature | 2.97e-07 | 3 |
leptomeningeal cell | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 1.85e-15 | 11 |
brain vasculature | 2.02e-15 | 5 |
cerebellum | 3.77e-13 | 6 |
rhombic lip | 3.77e-13 | 6 |
posterior neural tube | 1.70e-11 | 15 |
chordal neural plate | 1.70e-11 | 15 |
vascular plexus | 1.72e-10 | 2 |
ventricle of nervous system | 1.72e-10 | 2 |
choroid plexus | 1.72e-10 | 2 |
brain ventricle | 1.72e-10 | 2 |
ventricular system of brain | 1.72e-10 | 2 |
ventricular system of central nervous system | 1.72e-10 | 2 |
regional part of metencephalon | 4.43e-09 | 9 |
metencephalon | 4.43e-09 | 9 |
future metencephalon | 4.43e-09 | 9 |
central nervous system | 1.11e-07 | 81 |
ciliary epithelium | 2.19e-07 | 3 |
ciliary body | 2.19e-07 | 3 |
spinal cord | 3.16e-07 | 3 |
dorsal region element | 3.16e-07 | 3 |
dorsum | 3.16e-07 | 3 |
blood-cerebrospinal fluid barrier | 3.35e-07 | 3 |
segmental subdivision of hindbrain | 5.00e-07 | 12 |
hindbrain | 5.00e-07 | 12 |
presumptive hindbrain | 5.00e-07 | 12 |
nervous system | 6.61e-07 | 89 |