FFCP PHASE1:Hg19::chr17:4689735..4689745,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284013 | |EntrezGene=284013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30387 | |HGNC=30387 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z5L0,E9PGP4,E9PAU9,C9JQ15 | |UniProt=Q7Z5L0,E9PGP4,E9PAU9,C9JQ15 | ||
|association_with_transcript=-6bp_to_ENST00000328739,ENST00000354194,ENST00000416307,ENST00000441199,NM_001144939,NM_001144940,NM_001144941,NM_182566,uc002fyx.2,uc002fyy.2,uc010vsh.1,uc010vsi.1_5end | |association_with_transcript=-6bp_to_ENST00000328739,ENST00000354194,ENST00000416307,ENST00000441199,NM_001144939,NM_001144940,NM_001144941,NM_182566,uc002fyx.2,uc002fyy.2,uc010vsh.1,uc010vsi.1_5end | ||
|cluster_id=chr17:4689735..4689745,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_2_at_VMO1_5end | |description=CAGE_peak_2_at_VMO1_5end | ||
|id=chr17:4689735..4689745,- | |id=chr17:4689735..4689745,- | ||
|ontology_enrichment_celltype=CL:0000875!1.07e-09!3;CL:0002396!1.07e-09!3;CL:0000453!1.42e-09!5;CL:0000990!8.03e-08!8 | |ontology_enrichment_celltype=CL:0000875!1.07e-09!3;CL:0002396!1.07e-09!3;CL:0000453!1.42e-09!5;CL:0000990!8.03e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000875;5.26e-66;3!CL:0002396;5.26e-66;3!CL:0000453;1.30e-40;5!CL:0002591;5.73e-23;1!CL:0000990;5.99e-23;8!CL:0000451;6.40e-19;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000875,3.76e-66,3;CL:0002396,3.76e-66,3;CL:0000453,1.30e-40,5;CL:0002591,5.13e-23,1;CL:0000990,5.99e-23,8;CL:0002393,1.17e-22,9;CL:0002397,1.17e-22,9;CL:0000451,6.40e-19,10;CL:0000763,7.97e-10,108;CL:0000049,7.97e-10,108;CL:0000738,8.99e-08,136;CL:0000473,1.01e-07,48;CL:0000234,1.01e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.34e-18!115;UBERON:0006331!4.70e-08!3;UBERON:0000988!7.16e-08!3;UBERON:0001630!9.83e-07!2;UBERON:0005090!9.83e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;3.43e-12;2!UBERON:0002012;3.43e-12;2!UBERON:0008886;3.43e-12;2!UBERON:0002106;1.46e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,3.24e-12,2;UBERON:0007497,3.24e-12,2;UBERON:0003643,3.24e-12,2;UBERON:0003504,3.24e-12,2;UBERON:0003469,3.24e-12,2;UBERON:0003496,3.24e-12,2;UBERON:0002012,3.24e-12,2;UBERON:0008886,3.24e-12,2;UBERON:0007303,3.24e-12,2;UBERON:0002061,3.24e-12,2;UBERON:0005432,3.24e-12,2;UBERON:0004363,3.24e-12,2;UBERON:0004145,1.40e-08,3;UBERON:0002106,1.51e-08,3;UBERON:0004854,1.51e-08,3;UBERON:0009034,1.51e-08,3;UBERON:0002095,1.51e-08,3;UBERON:0004782,1.51e-08,3;UBERON:0003281,1.51e-08,3;UBERON:0009664,1.51e-08,3;UBERON:0002296,1.51e-08,3;UBERON:0005602,1.51e-08,3;UBERON:0001179,1.51e-08,3;UBERON:0006293,1.51e-08,3 | |||
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| |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671746422719773,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0,0,0.580418477257168,0,0,0.502497330513487,0,0,0,0,0,0,0,0,0,0,0,2.56511469367124,2.38700012638908,2.55729815270488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0.0654895377488563,0,0,0.649094787309367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0.751190294532984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0.58620893471233,0,0.387848869084652,0.13223260174269,0,0,0.427149650270779,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.65094895634227,6.37751233504143,8.5054005013039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,1.12780701575824,0.709036767709349,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0.371995018166751,0.924351257262837,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0.124149428591716,0,0,0.202117188958219,0,0,0.134704106029175,0.215166616178029,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p2@VMO1 | |short_description=p2@VMO1 | ||
}} | }} |
Latest revision as of 18:14, 15 September 2015
Short description: | p2@VMO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VMO1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -6bp_to_ENST00000328739, ENST00000354194, ENST00000416307, ENST00000441199, NM_001144939, NM_001144940, NM_001144941, NM_182566, uc002fyx.2, uc002fyy.2, uc010vsh.1, uc010vsi.1_5end |
EntrezGene: | VMO1 |
HGNC: | 30387 |
UniProt: | Q7Z5L0E9PGP4E9PAU9C9JQ15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
non-classical monocyte | 3.76e-66 | 3 |
CD14-low, CD16-positive monocyte | 3.76e-66 | 3 |
Langerhans cell | 1.30e-40 | 5 |
smooth muscle cell of the pulmonary artery | 5.13e-23 | 1 |
conventional dendritic cell | 5.99e-23 | 8 |
intermediate monocyte | 1.17e-22 | 9 |
CD14-positive, CD16-positive monocyte | 1.17e-22 | 9 |
dendritic cell | 6.40e-19 | 10 |
myeloid cell | 7.97e-10 | 108 |
common myeloid progenitor | 7.97e-10 | 108 |
leukocyte | 8.99e-08 | 136 |
defensive cell | 1.01e-07 | 48 |
phagocyte | 1.01e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 3.24e-12 | 2 |
developing epithelial placode | 3.24e-12 | 2 |
respiratory system arterial blood vessel | 3.24e-12 | 2 |
respiratory system blood vessel | 3.24e-12 | 2 |
respiratory system artery | 3.24e-12 | 2 |
head blood vessel | 3.24e-12 | 2 |
pulmonary artery | 3.24e-12 | 2 |
pulmonary vascular system | 3.24e-12 | 2 |
pharyngeal vasculature | 3.24e-12 | 2 |
truncus arteriosus | 3.24e-12 | 2 |
aortic sac | 3.24e-12 | 2 |
pharyngeal arch artery | 3.24e-12 | 2 |
outflow tract | 1.40e-08 | 3 |
spleen | 1.51e-08 | 3 |
gastrointestinal system mesentery | 1.51e-08 | 3 |
stomach region | 1.51e-08 | 3 |
mesentery | 1.51e-08 | 3 |
gastrointestinal system serosa | 1.51e-08 | 3 |
mesentery of stomach | 1.51e-08 | 3 |
gut mesentery | 1.51e-08 | 3 |
dorsal mesentery | 1.51e-08 | 3 |
dorsal mesogastrium | 1.51e-08 | 3 |
peritoneal cavity | 1.51e-08 | 3 |
spleen primordium | 1.51e-08 | 3 |