FFCP PHASE1:Mm9::chrX:96666015..96666087,-: Difference between revisions
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{{FFCP|EntrezGene=18744|HGNC=|MCL_coexpression_id=1|UniProt=O55176,B1AXU4,Q05CG5,B1AXU3|association_with_transcript=0bp_to_ENSMUST00000036354,ENSMUST00000113790,ENSMUST00000167246,NM_001083110,NM_008853,uc009tvk.1,uc009tvl.1,uc009tvm.1_5end|description=CAGE_peak_1_at_Pja1_5end|id=chrX:96666015..96666087,-|ontology_enrichment_celltype=CL:0000117!2.02e-13!23;CL:0000337!2.02e-13!23;CL:0000540!1.37e-11!33;CL:0000047!1.37e-11!33;CL:0000031!1.37e-11!33;CL:0000404!1.37e-11!33;CL:0000393!2.28e-09!39;CL:0000211!2.28e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.02e-13,23;CL:0000337,2.02e-13,23;CL:0000540,1.37e-11,33;CL:0000047,1.37e-11,33;CL:0000031,1.37e-11,33;CL:0000404,1.37e-11,33;CL:0000393,2.28e-09,39;CL:0000211,2.28e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!7.24e-24!71;UBERON:0003075!7.24e-24!71;UBERON:0007284!7.24e-24!71;UBERON:0001049!3.02e-20!52;UBERON:0005068!3.02e-20!52;UBERON:0006241!3.02e-20!52;UBERON:0007135!3.02e-20!52;UBERON:0001017!1.79e-19!73;UBERON:0005743!1.79e-19!73;UBERON:0000955!4.94e-19!50;UBERON:0006238!4.94e-19!50;UBERON:0000033!1.06e-18!63;UBERON:0002616!1.64e-18!49;UBERON:0000073!3.58e-18!75;UBERON:0001016!3.58e-18!75;UBERON:0003056!1.21e-17!49;UBERON:0004121!1.31e-17!102;UBERON:0000924!1.31e-17!102;UBERON:0006601!1.31e-17!102;UBERON:0003080!2.72e-17!40;UBERON:0002020!4.67e-17!34;UBERON:0002780!1.13e-16!39;UBERON:0001890!1.13e-16!39;UBERON:0006240!1.13e-16!39;UBERON:0002791!3.28e-14!29;UBERON:0003528!3.28e-14!29;UBERON:0001893!3.28e-14!29;UBERON:0000956!1.66e-09!21;UBERON:0001869!1.66e-09!21;UBERON:0000203!1.66e-09!21;UBERON:0002021!9.16e-08!10;UBERON:0000411!9.16e-08!10;UBERON:0001950!9.16e-08!10;UBERON:0002619!1.15e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.77e-21,54;UBERON:0002346,6.62e-21,64;UBERON:0003075,6.62e-21,64;UBERON:0007284,6.62e-21,64;UBERON:0001049,3.02e-20,52;UBERON:0005068,3.02e-20,52;UBERON:0006241,3.02e-20,52;UBERON:0007135,3.02e-20,52;UBERON:0001017,1.79e-19,73;UBERON:0001016,3.58e-18,75;UBERON:0003056,1.21e-17,49;UBERON:0000955,1.91e-17,47;UBERON:0006238,1.91e-17,47;UBERON:0010371,2.43e-17,73;UBERON:0003080,2.72e-17,40;UBERON:0010314,3.61e-17,92;UBERON:0002020,4.67e-17,34;UBERON:0002616,6.21e-17,46;UBERON:0002780,1.13e-16,39;UBERON:0001890,1.13e-16,39;UBERON:0006240,1.13e-16,39;UBERON:0004121,6.84e-15,95;UBERON:0000924,6.84e-15,95;UBERON:0006601,6.84e-15,95;UBERON:0003528,3.28e-14,29;UBERON:0002791,3.28e-14,29;UBERON:0001893,3.28e-14,29;UBERON:0000956,1.66e-09,21;UBERON:0001869,1.66e-09,21;UBERON:0000203,1.66e-09,21;UBERON:0002021,9.16e-08,10;UBERON:0000411,9.16e-08,10;UBERON:0001950,9.16e-08,10;UBERON:0002619,1.15e-07,17|phase1_expression=59.2550734287738,73.9827864195446,61.4248973175874,90.1343349694354,87.1558570106644,38.4443532678228,36.9107972140931,33.7011874182514,37.3090113701917,41.6634856853148,15.0671812038444,12.1253681672911,38.6913649644525,43.7102012094987,10.6595123781012,11.1361397064404,6.29605690315332,17.9813434254195,16.4537320326887,15.7024171165271,58.8499567845403,14.4964788753293,16.4555867157529,43.8379238453934,38.5407592192846,57.997428375617,58.1528694814751,54.0832794041581,52.6364871894156,54.9425682876649,31.7074630237086,19.6859508772486,15.9916844771988,15.8481681015439,24.8412392986096,31.9170519088305,23.8878146826972,7.53356935326434,4.6880120671428,7.85285615960697,7.05877785637217,5.46436387966757,8.25367600152961,37.8949422106488,36.7998260326838,33.9561491499111,16.4302182313088,19.8402892306206,20.6505011770404,20.8039992009483,32.1968769738334,18.6878333674463,17.1138258178891,119.684753431872,79.3181365976215,49.9083305909737,29.2264108737532,44.8634720281375,109.250888864183,114.791042502031,108.385169999557,36.2563649313971,32.9039074561122,12.5985960419396,7.9109309005358,11.3676818391376,10.1864037576258,10.7581125490035,97.260856345352,102.604513132085,116.309703627314,111.689534901887,119.489880654823,109.261792899739,112.522582975409,108.467816819982,74.8787990795843,119.643035785821,134.712929665726,136.10664893756,156.352382916518,118.768248486941,132.891107524657,135.625789017635,152.951046024587,113.432005407362,127.707397676795,120.600441448969,21.1276079399584,28.7927644006853,25.5080750057476,52.4858564958646,19.7191686775248,72.3202276794675,47.4336784736798,76.164570806547,37.0773269147825,39.7102651606875,41.565760736459,33.5672595784823,55.2106205524588,16.6824420638613,15.2883143823987,14.2213340630666,30.5252367825812,28.1229450677359,27.8038444758131,43.2756904135237,28.7421050848361,93.9638740280341,64.3630562302364,89.8173161020817,74.2581901164508,94.9552635481522,76.3150709310724,90.228612574707,16.0676729027343,26.8954803871036,8.84610551949874,42.706448386116,22.5258348829601,18.4252596191384,33.550517019262,86.663115915418,81.6842156572475,59.5214938636018,12.4607729486157,7.7987355029143,10.5468288470644,123.876858787788,112.545148293382,105.675310126919,114.897875647095,121.976273146568,121.9715821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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18744 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O55176,uniprot:B1AXU4,uniprot:Q05CG5,uniprot:B1AXU3 | |||
|association_with_transcript=0bp_to_ENSMUST00000036354,ENSMUST00000113790,ENSMUST00000167246,NM_001083110,NM_008853,uc009tvk.1,uc009tvl.1,uc009tvm.1_5end | |||
|cluster_id=chrX:96666015..96666087,- | |||
|description=CAGE_peak_1_at_Pja1_5end | |||
|id=chrX:96666015..96666087,- | |||
|ontology_enrichment_celltype=CL:0000117!2.02e-13!23;CL:0000337!2.02e-13!23;CL:0000540!1.37e-11!33;CL:0000047!1.37e-11!33;CL:0000031!1.37e-11!33;CL:0000404!1.37e-11!33;CL:0000393!2.28e-09!39;CL:0000211!2.28e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.02e-13,23;CL:0000337,2.02e-13,23;CL:0000540,1.37e-11,33;CL:0000047,1.37e-11,33;CL:0000031,1.37e-11,33;CL:0000404,1.37e-11,33;CL:0000393,2.28e-09,39;CL:0000211,2.28e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!7.24e-24!71;UBERON:0003075!7.24e-24!71;UBERON:0007284!7.24e-24!71;UBERON:0001049!3.02e-20!52;UBERON:0005068!3.02e-20!52;UBERON:0006241!3.02e-20!52;UBERON:0007135!3.02e-20!52;UBERON:0001017!1.79e-19!73;UBERON:0005743!1.79e-19!73;UBERON:0000955!4.94e-19!50;UBERON:0006238!4.94e-19!50;UBERON:0000033!1.06e-18!63;UBERON:0002616!1.64e-18!49;UBERON:0000073!3.58e-18!75;UBERON:0001016!3.58e-18!75;UBERON:0003056!1.21e-17!49;UBERON:0004121!1.31e-17!102;UBERON:0000924!1.31e-17!102;UBERON:0006601!1.31e-17!102;UBERON:0003080!2.72e-17!40;UBERON:0002020!4.67e-17!34;UBERON:0002780!1.13e-16!39;UBERON:0001890!1.13e-16!39;UBERON:0006240!1.13e-16!39;UBERON:0002791!3.28e-14!29;UBERON:0003528!3.28e-14!29;UBERON:0001893!3.28e-14!29;UBERON:0000956!1.66e-09!21;UBERON:0001869!1.66e-09!21;UBERON:0000203!1.66e-09!21;UBERON:0002021!9.16e-08!10;UBERON:0000411!9.16e-08!10;UBERON:0001950!9.16e-08!10;UBERON:0002619!1.15e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.77e-21,54;UBERON:0002346,6.62e-21,64;UBERON:0003075,6.62e-21,64;UBERON:0007284,6.62e-21,64;UBERON:0001049,3.02e-20,52;UBERON:0005068,3.02e-20,52;UBERON:0006241,3.02e-20,52;UBERON:0007135,3.02e-20,52;UBERON:0001017,1.79e-19,73;UBERON:0001016,3.58e-18,75;UBERON:0003056,1.21e-17,49;UBERON:0000955,1.91e-17,47;UBERON:0006238,1.91e-17,47;UBERON:0010371,2.43e-17,73;UBERON:0003080,2.72e-17,40;UBERON:0010314,3.61e-17,92;UBERON:0002020,4.67e-17,34;UBERON:0002616,6.21e-17,46;UBERON:0002780,1.13e-16,39;UBERON:0001890,1.13e-16,39;UBERON:0006240,1.13e-16,39;UBERON:0004121,6.84e-15,95;UBERON:0000924,6.84e-15,95;UBERON:0006601,6.84e-15,95;UBERON:0003528,3.28e-14,29;UBERON:0002791,3.28e-14,29;UBERON:0001893,3.28e-14,29;UBERON:0000956,1.66e-09,21;UBERON:0001869,1.66e-09,21;UBERON:0000203,1.66e-09,21;UBERON:0002021,9.16e-08,10;UBERON:0000411,9.16e-08,10;UBERON:0001950,9.16e-08,10;UBERON:0002619,1.15e-07,17 | |||
|phase1_expression=59.2550734287738,73.9827864195446,61.4248973175874,90.1343349694354,87.1558570106644,38.4443532678228,36.9107972140931,33.7011874182514,37.3090113701917,41.6634856853148,15.0671812038444,12.1253681672911,38.6913649644525,43.7102012094987,10.6595123781012,11.1361397064404,6.29605690315332,17.9813434254195,16.4537320326887,15.7024171165271,58.8499567845403,14.4964788753293,16.4555867157529,43.8379238453934,38.5407592192846,57.997428375617,58.1528694814751,54.0832794041581,52.6364871894156,54.9425682876649,31.7074630237086,19.6859508772486,15.9916844771988,15.8481681015439,24.8412392986096,31.9170519088305,23.8878146826972,7.53356935326434,4.6880120671428,7.85285615960697,7.05877785637217,5.46436387966757,8.25367600152961,37.8949422106488,36.7998260326838,33.9561491499111,16.4302182313088,19.8402892306206,20.6505011770404,20.8039992009483,32.1968769738334,18.6878333674463,17.1138258178891,119.684753431872,79.3181365976215,49.9083305909737,29.2264108737532,44.8634720281375,109.250888864183,114.791042502031,108.385169999557,36.2563649313971,32.9039074561122,12.5985960419396,7.9109309005358,11.3676818391376,10.1864037576258,10.7581125490035,97.260856345352,102.604513132085,116.309703627314,111.689534901887,119.489880654823,109.261792899739,112.522582975409,108.467816819982,74.8787990795843,119.643035785821,134.712929665726,136.10664893756,156.352382916518,118.768248486941,132.891107524657,135.625789017635,152.951046024587,113.432005407362,127.707397676795,120.600441448969,21.1276079399584,28.7927644006853,25.5080750057476,52.4858564958646,19.7191686775248,72.3202276794675,47.4336784736798,76.164570806547,37.0773269147825,39.7102651606875,41.565760736459,33.5672595784823,55.2106205524588,16.6824420638613,15.2883143823987,14.2213340630666,30.5252367825812,28.1229450677359,27.8038444758131,43.2756904135237,28.7421050848361,93.9638740280341,64.3630562302364,89.8173161020817,74.2581901164508,94.9552635481522,76.3150709310724,90.228612574707,16.0676729027343,26.8954803871036,8.84610551949874,42.706448386116,22.5258348829601,18.4252596191384,33.550517019262,86.663115915418,81.6842156572475,59.5214938636018,12.4607729486157,7.7987355029143,10.5468288470644,123.876858787788,112.545148293382,105.675310126919,114.897875647095,121.976273146568,121.971582156462,118.111639513328,58.7613129416325,50.5092300676978,219.36335432043,40.1943944743165,59.0746811050675,56.0961134817674,53.6585146819941,57.117125959736,51.7077393550092,59.4447662121703,59.1257881971889,60.2778853821907,60.7901740070615,58.8119909321918,54.1929462424962,52.8261715150455,50.8826466082844,41.79025998266,41.9795558272205,81.6040493955822,16.1509033082044,14.411482798424,14.7765019685708,44.5320410951329,45.4980556363327,41.4142741360334,39.2996261071449,40.3366675082178,39.8009151249436,40.6934403313214,43.1920176253387,33.044591889909,41.4690821781971,32.9976602798981,29.0226338174164,32.1639972335731,25.6873634890529,19.9967563952954,110.612512944731,88.7037758709432,91.1955841035282,52.3612121993818,57.1612511434427,58.5236413088305,47.8098281504966,50.2191976312123,45.3651209443535,41.6594121186505,58.8416036315194,40.6806418168307,38.4542869464412,40.9850332404771,41.3323864692535,63.8161780144497,57.4927212666687,59.3440994298014,61.6420678097515,68.663356078447,71.0058734740407,56.411417813152,62.4527008679755,47.2715426060747,52.1701431275123,47.0876372054931,41.4476641501229,47.631305273815,45.9501571985081,20.1882577916474,25.3561103696032,19.1132795527126,17.6488305607998,15.9176925436595,22.1524491049835,22.4402987211632,28.2115294588562,25.5342114264916,30.1913233707445,32.3762624471598,31.2037673114561,47.2322501761099,45.3875456210438,57.4107790422407,27.3434721446575,57.9843720017683,59.8081463542235,49.0563297890294,50.2237131337395,43.3841206774303,37.3728516191042,37.2705267408396,43.9802052056273,34.1055622059113,37.7907801718244,36.0499292374624,34.1916264094473,35.1497212353073,9.04747703635634,17.4049818821987,28.5223278351041,28.1455481230827,108.211097651772,103.615130947508,31.311574566945,17.4204939771017,49.5347904483523,46.8526493155966,68.7200638767629,44.6871652171272,47.6789162536323,43.3107092106914,40.4810701674894,50.2680075607456,51.7826989109946,110.534532849102,63.4472180880961,65.1720109422154,44.7939138222334,37.283247791793,19.9117707509944,50.4983723202361,48.9764162282897,45.2652191414155,41.0469631104274,35.6624771614956,32.8203932323641,36.7169066772281,41.7101932710124,30.0234920039025,21.0837217149998,19.5957532171555,80.6841865636478,55.0986947735809,59.5049945400671,53.3699217228665,54.6207919618203,73.1312152168489,72.7306671061375,61.8063846702637,19.477751769288,23.3015277950202,34.4024300965741,30.1741842882908,30.839705498918,31.5436597374255,36.4085649209566,38.0806887408542,52.4665505933731,85.851914830866,15.7201210334024,54.692520010254,42.0391577129245,16.5764242164128,13.5327285443815,11.8964650067392,10.8786195196067,15.1147568509551,12.0233977209849,37.2321541025894,49.3484149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| |||
|short_description=p1@Pja1 | |||
}} |
Revision as of 11:04, 6 August 2015
Short description: | p1@Pja1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pja1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000036354, ENSMUST00000113790, ENSMUST00000167246, NM_001083110, NM_008853, uc009tvk.1, uc009tvl.1, uc009tvm.1_5end |
EntrezGene: | 18744 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.02e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.02e-13 | 23 |
neuron | 1.37e-11 | 33 |
neuronal stem cell | 1.37e-11 | 33 |
neuroblast | 1.37e-11 | 33 |
electrically signaling cell | 1.37e-11 | 33 |
electrically responsive cell | 2.28e-09 | 39 |
electrically active cell | 2.28e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.77e-21 | 54 |
neurectoderm | 6.62e-21 | 64 |
neural plate | 6.62e-21 | 64 |
presumptive neural plate | 6.62e-21 | 64 |
neural tube | 3.02e-20 | 52 |
neural rod | 3.02e-20 | 52 |
future spinal cord | 3.02e-20 | 52 |
neural keel | 3.02e-20 | 52 |
central nervous system | 1.79e-19 | 73 |
nervous system | 3.58e-18 | 75 |
pre-chordal neural plate | 1.21e-17 | 49 |
brain | 1.91e-17 | 47 |
future brain | 1.91e-17 | 47 |
ecto-epithelium | 2.43e-17 | 73 |
anterior neural tube | 2.72e-17 | 40 |
structure with developmental contribution from neural crest | 3.61e-17 | 92 |
gray matter | 4.67e-17 | 34 |
regional part of brain | 6.21e-17 | 46 |
regional part of forebrain | 1.13e-16 | 39 |
forebrain | 1.13e-16 | 39 |
future forebrain | 1.13e-16 | 39 |
ectoderm-derived structure | 6.84e-15 | 95 |
ectoderm | 6.84e-15 | 95 |
presumptive ectoderm | 6.84e-15 | 95 |
brain grey matter | 3.28e-14 | 29 |
regional part of telencephalon | 3.28e-14 | 29 |
telencephalon | 3.28e-14 | 29 |
cerebral cortex | 1.66e-09 | 21 |
cerebral hemisphere | 1.66e-09 | 21 |
pallium | 1.66e-09 | 21 |
occipital lobe | 9.16e-08 | 10 |
visual cortex | 9.16e-08 | 10 |
neocortex | 9.16e-08 | 10 |
regional part of cerebral cortex | 1.15e-07 | 17 |