FFCP PHASE1:Mm9::chr3:28162153..28162255,+: Difference between revisions
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{{FFCP|EntrezGene=665113|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000161214,ENSMUST00000161234_5end|description=CAGE_peak_1_at_Tnik_5end|id=chr3:28162153..28162255,+|ontology_enrichment_celltype=CL:0000540!4.49e-14!33;CL:0000047!4.49e-14!33;CL:0000031!4.49e-14!33;CL:0000404!4.49e-14!33;CL:0000117!1.70e-12!23;CL:0000337!1.70e-12!23;CL:0002319!1.87e-09!43;CL:0000393!3.56e-09!39;CL:0000211!3.56e-09!39;CL:0000221!3.74e-09!44;CL:0000133!3.74e-09!44|ontology_enrichment_celltype_v019_2=CL:0000540,4.43e-14,33;CL:0000047,4.43e-14,33;CL:0000031,4.43e-14,33;CL:0000404,4.43e-14,33;CL:0000117,1.68e-12,23;CL:0000337,1.68e-12,23;CL:0002319,1.85e-09,43;CL:0000393,2.74e-09,39;CL:0000211,2.74e-09,39;CL:0000221,3.71e-09,44;CL:0000133,3.71e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.32e-18!73;UBERON:0005743!1.32e-18!73;UBERON:0000073!1.37e-18!75;UBERON:0001016!1.37e-18!75;UBERON:0004121!9.37e-15!102;UBERON:0000924!9.37e-15!102;UBERON:0006601!9.37e-15!102;UBERON:0001049!2.14e-14!52;UBERON:0005068!2.14e-14!52;UBERON:0006241!2.14e-14!52;UBERON:0007135!2.14e-14!52;UBERON:0000955!1.13e-13!50;UBERON:0006238!1.13e-13!50;UBERON:0002020!1.29e-13!34;UBERON:0007811!4.07e-13!86;UBERON:0000033!4.38e-13!63;UBERON:0002616!4.45e-13!49;UBERON:0002346!9.53e-13!71;UBERON:0003075!9.53e-13!71;UBERON:0007284!9.53e-13!71;UBERON:0003056!1.69e-11!49;UBERON:0002791!2.31e-11!29;UBERON:0003528!2.31e-11!29;UBERON:0001893!2.31e-11!29;UBERON:0000153!5.60e-11!94;UBERON:0003080!1.08e-10!40;UBERON:0002780!3.41e-10!39;UBERON:0001890!3.41e-10!39;UBERON:0006240!3.41e-10!39;UBERON:0000064!2.06e-08!99;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-18,73;UBERON:0001016,1.34e-18,75;UBERON:0004121,1.29e-16,95;UBERON:0000924,1.29e-16,95;UBERON:0006601,1.29e-16,95;UBERON:0000073,2.36e-15,54;UBERON:0002346,4.72e-15,64;UBERON:0003075,4.72e-15,64;UBERON:0007284,4.72e-15,64;UBERON:0001049,2.11e-14,52;UBERON:0005068,2.11e-14,52;UBERON:0006241,2.11e-14,52;UBERON:0007135,2.11e-14,52;UBERON:0002020,1.27e-13,34;UBERON:0011216,8.64e-13,194;UBERON:0010371,1.06e-12,73;UBERON:0000955,2.53e-12,47;UBERON:0006238,2.53e-12,47;UBERON:0002616,9.66e-12,46;UBERON:0003056,1.68e-11,49;UBERON:0003528,2.28e-11,29;UBERON:0002791,2.28e-11,29;UBERON:0001893,2.28e-11,29;UBERON:0003080,1.07e-10,40;UBERON:0002780,3.38e-10,39;UBERON:0001890,3.38e-10,39;UBERON:0006240,3.38e-10,39;UBERON:0010314,9.94e-10,92;UBERON:0000956,1.10e-07,21;UBERON:0001869,1.10e-07,21;UBERON:0000203,1.10e-07,21|phase1_expression=5.2849119544582,30.0118850569851,27.7549536027617,71.3815538684119,74.6334637620057,19.4739955417792,18.9226238882376,28.7945011274715,16.3314917695933,19.8954847373694,1.54096171402954,1.03703806693937,45.5393941617007,44.8466664409457,2.33176833270964,3.44207954562704,0.699561878128147,5.36285681109004,7.54129384831563,2.54633791078818,14.4573593256819,0.496454756004426,0.261199789138935,23.998863419011,15.8292403936347,17.8011908875656,23.26114779259,16.5912849168135,18.812318526181,28.7314347926321,9.3126814475228,7.62036808151557,11.6862309641068,15.8481681015439,12.4206196493048,9.80784407615105,12.6585000882669,0,0,0,1.17646297606203,1.36609096991689,0.485510353031154,0,0,0,3.12956537739216,10.0291571935005,5.93152693383074,8.55491555926847,4.19959264876088,4.31257693094915,0.503347818173209,36.9934692425786,42.3478186919505,6.43148590089868,10.601737277734,6.18806510732931,51.9953304409166,56.0730438028355,55.1433321050376,1.0165335962074,0.889294796111139,0,0.988866362566974,0.7104801149461,8.38880309451533,10.7581125490035,83.573827520633,81.2735748756778,72.5621116662268,26.8511925339575,24.5164080456291,33.4399881856825,22.6195311603038,22.9804696652505,38.540558349786,31.0280231547006,33.6398307831173,48.5341538847113,51.141592773747,59.3841242434706,28.4766658981409,42.7699583624077,44.3114918552749,52.1492596288392,50.2572033220833,48.6502553604034,7.1182621733193,31.6644836847431,13.0439019915755,2.58127163094416,1.3599426674155,1.61910957491345,0.649776417447669,0.448026887097336,9.40977614882737,0.170430322578058,0.259786004602869,0.35333957451034,8.87313544593087,0,0,0,7.57718643539249,6.84071636782766,2.02209778005913,9.59144589640104,18.6435276225964,12.4691396814453,8.15381035800839,7.61163695780353,5.07354093963329,9.79697163592047,11.2885158850277,7.6656620711102,0.494389935468748,5.35017620603673,10.6153266233985,14.235482795372,13.471332626084,8.727754556434,13.0474232852686,67.6323641096674,61.5773318031558,29.8884754594052,5.87094110079009,0.599902730993408,4.06624726633807,44.0384479850179,28.8225379775735,26.2617595915887,27.8118912307642,29.1515621356577,34.7006034414465,29.3656686152641,4.07357455401265,9.82815067819735,3.79084137650512,24.411255282831,7.28674480591141,8.27647575960503,13.8647839950119,24.5648853072216,29.5958771308276,34.2063633160549,28.1105173679186,24.8355235909455,0.86227197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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:665113 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000161214,ENSMUST00000161234_5end | |||
|cluster_id=chr3:28162153..28162255,+ | |||
|description=CAGE_peak_1_at_Tnik_5end | |||
|id=chr3:28162153..28162255,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.49e-14!33;CL:0000047!4.49e-14!33;CL:0000031!4.49e-14!33;CL:0000404!4.49e-14!33;CL:0000117!1.70e-12!23;CL:0000337!1.70e-12!23;CL:0002319!1.87e-09!43;CL:0000393!3.56e-09!39;CL:0000211!3.56e-09!39;CL:0000221!3.74e-09!44;CL:0000133!3.74e-09!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.43e-14,33;CL:0000047,4.43e-14,33;CL:0000031,4.43e-14,33;CL:0000404,4.43e-14,33;CL:0000117,1.68e-12,23;CL:0000337,1.68e-12,23;CL:0002319,1.85e-09,43;CL:0000393,2.74e-09,39;CL:0000211,2.74e-09,39;CL:0000221,3.71e-09,44;CL:0000133,3.71e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.32e-18!73;UBERON:0005743!1.32e-18!73;UBERON:0000073!1.37e-18!75;UBERON:0001016!1.37e-18!75;UBERON:0004121!9.37e-15!102;UBERON:0000924!9.37e-15!102;UBERON:0006601!9.37e-15!102;UBERON:0001049!2.14e-14!52;UBERON:0005068!2.14e-14!52;UBERON:0006241!2.14e-14!52;UBERON:0007135!2.14e-14!52;UBERON:0000955!1.13e-13!50;UBERON:0006238!1.13e-13!50;UBERON:0002020!1.29e-13!34;UBERON:0007811!4.07e-13!86;UBERON:0000033!4.38e-13!63;UBERON:0002616!4.45e-13!49;UBERON:0002346!9.53e-13!71;UBERON:0003075!9.53e-13!71;UBERON:0007284!9.53e-13!71;UBERON:0003056!1.69e-11!49;UBERON:0002791!2.31e-11!29;UBERON:0003528!2.31e-11!29;UBERON:0001893!2.31e-11!29;UBERON:0000153!5.60e-11!94;UBERON:0003080!1.08e-10!40;UBERON:0002780!3.41e-10!39;UBERON:0001890!3.41e-10!39;UBERON:0006240!3.41e-10!39;UBERON:0000064!2.06e-08!99;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-18,73;UBERON:0001016,1.34e-18,75;UBERON:0004121,1.29e-16,95;UBERON:0000924,1.29e-16,95;UBERON:0006601,1.29e-16,95;UBERON:0000073,2.36e-15,54;UBERON:0002346,4.72e-15,64;UBERON:0003075,4.72e-15,64;UBERON:0007284,4.72e-15,64;UBERON:0001049,2.11e-14,52;UBERON:0005068,2.11e-14,52;UBERON:0006241,2.11e-14,52;UBERON:0007135,2.11e-14,52;UBERON:0002020,1.27e-13,34;UBERON:0011216,8.64e-13,194;UBERON:0010371,1.06e-12,73;UBERON:0000955,2.53e-12,47;UBERON:0006238,2.53e-12,47;UBERON:0002616,9.66e-12,46;UBERON:0003056,1.68e-11,49;UBERON:0003528,2.28e-11,29;UBERON:0002791,2.28e-11,29;UBERON:0001893,2.28e-11,29;UBERON:0003080,1.07e-10,40;UBERON:0002780,3.38e-10,39;UBERON:0001890,3.38e-10,39;UBERON:0006240,3.38e-10,39;UBERON:0010314,9.94e-10,92;UBERON:0000956,1.10e-07,21;UBERON:0001869,1.10e-07,21;UBERON:0000203,1.10e-07,21 | |||
|phase1_expression=5.2849119544582,30.0118850569851,27.7549536027617,71.3815538684119,74.6334637620057,19.4739955417792,18.9226238882376,28.7945011274715,16.3314917695933,19.8954847373694,1.54096171402954,1.03703806693937,45.5393941617007,44.8466664409457,2.33176833270964,3.44207954562704,0.699561878128147,5.36285681109004,7.54129384831563,2.54633791078818,14.4573593256819,0.496454756004426,0.261199789138935,23.998863419011,15.8292403936347,17.8011908875656,23.26114779259,16.5912849168135,18.812318526181,28.7314347926321,9.3126814475228,7.62036808151557,11.6862309641068,15.8481681015439,12.4206196493048,9.80784407615105,12.6585000882669,0,0,0,1.17646297606203,1.36609096991689,0.485510353031154,0,0,0,3.12956537739216,10.0291571935005,5.93152693383074,8.55491555926847,4.19959264876088,4.31257693094915,0.503347818173209,36.9934692425786,42.3478186919505,6.43148590089868,10.601737277734,6.18806510732931,51.9953304409166,56.0730438028355,55.1433321050376,1.0165335962074,0.889294796111139,0,0.988866362566974,0.7104801149461,8.38880309451533,10.7581125490035,83.573827520633,81.2735748756778,72.5621116662268,26.8511925339575,24.5164080456291,33.4399881856825,22.6195311603038,22.9804696652505,38.540558349786,31.0280231547006,33.6398307831173,48.5341538847113,51.141592773747,59.3841242434706,28.4766658981409,42.7699583624077,44.3114918552749,52.1492596288392,50.2572033220833,48.6502553604034,7.1182621733193,31.6644836847431,13.0439019915755,2.58127163094416,1.3599426674155,1.61910957491345,0.649776417447669,0.448026887097336,9.40977614882737,0.170430322578058,0.259786004602869,0.35333957451034,8.87313544593087,0,0,0,7.57718643539249,6.84071636782766,2.02209778005913,9.59144589640104,18.6435276225964,12.4691396814453,8.15381035800839,7.61163695780353,5.07354093963329,9.79697163592047,11.2885158850277,7.6656620711102,0.494389935468748,5.35017620603673,10.6153266233985,14.235482795372,13.471332626084,8.727754556434,13.0474232852686,67.6323641096674,61.5773318031558,29.8884754594052,5.87094110079009,0.599902730993408,4.06624726633807,44.0384479850179,28.8225379775735,26.2617595915887,27.8118912307642,29.1515621356577,34.7006034414465,29.3656686152641,4.07357455401265,9.82815067819735,3.79084137650512,24.411255282831,7.28674480591141,8.27647575960503,13.8647839950119,24.5648853072216,29.5958771308276,34.2063633160549,28.1105173679186,24.8355235909455,0.862271971731369,8.50977360755187,7.38994721488585,5.2606975782618,6.95118123063995,12.1888258282758,8.0255033199098,4.17971960318836,3.51106593656617,1.02939162845886,1.70498099637356,5.79952163099405,7.73935997937617,7.92273070428465,16.3353867553795,13.3799677588235,15.2724441758504,13.2544348507732,17.7060444923749,12.4938916332871,15.4686258918672,11.6558899496158,15.2409361946209,12.1345989563026,11.8557062257167,13.8232611323183,34.9081314616451,45.4838386716437,64.1012438988568,34.9074747995878,3.19932375802851,8.36052018697579,17.0105048945163,24.6053900040478,24.9063409106255,18.4518857329182,27.0481565080372,14.3288090609889,21.6148279568232,21.089386036362,19.8863368861503,39.5480539807857,30.2593269824572,24.8926591567959,1.13800740571849,3.77020091612105,1.1270773567308,3.25842124552503,2.13347735884388,1.82353131714828,2.71917109634306,1.18088118383682,1.56998727841375,0.863780147452604,5.92905254174298,7.67487486294033,9.23827277032054,7.64531182108503,8.31726497692862,4.3411888755435,3.8193877767213,6.61701116136864,4.86405680325106,2.47105271869273,5.75072826109418,3.72140947668503,2.18426371180192,1.26289438973556,1.25578189465339,0.482443521363367,13.8564892624954,5.49525094134406,12.0594082567099,10.0149600607361,11.4998221661366,24.1209010716215,22.6141458841713,16.5863600679129,25.2216230569906,18.6030339304971,20.2507556195009,19.4997344511728,18.4772930596508,17.7918342055259,0,0,29.0140921081231,22.6268131969881,31.4679156376072,42.7822656061542,0.819674726883377,20.955086957963,12.304820557234,17.5697434933487,15.9413314322271,39.9077892580762,57.9276552614225,54.6337704422447,30.765613327292,37.7010056705592,44.6675189079572,57.1951943230817,11.9229671574946,3.73937767701236,3.25773918707152,13.6925202067204,2.65490276679926,6.06951590387454,3.32555912661226,3.01768127609437,3.83892460745005,6.45613810682248,6.46070732920553,4.72593848320757,6.06045543254026,4.10847785316561,3.16255825724996,1.03135543248187,28.5969268833182,8.8229936075342,4.78627129996192,12.4315480318324,19.5074257006501,16.4099312193905,15.1385098953951,5.17590413494819,3.28540391289194,2.96564899209348,6.17479514553893,12.036696464728,5.8127193610526,5.30753739367772,5.61050016814741,7.05805868903763,29.7310453362448,32.0785772478182,8.88528580148834,9.49379592630823,8.33375373163703,10.7370020492674,6.28793447516716,8.69357058184786,7.64902934972349,11.056164733569,8.7065983496787,6.68269432610579,4.74503990371703,19.5186688441775,15.0127423742304,16.3088870891286,15.2853794622324,13.6212989848669,15.5388496763632,9.94672579539312,15.035336901848,5.59205381778233,3.945850570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| |||
|short_description=p1@Tnik | |||
}} |
Revision as of 08:34, 6 August 2015
Short description: | p1@Tnik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tnik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000161214, ENSMUST00000161234_5end |
EntrezGene: | 665113 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.43e-14 | 33 |
neuronal stem cell | 4.43e-14 | 33 |
neuroblast | 4.43e-14 | 33 |
electrically signaling cell | 4.43e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.68e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-12 | 23 |
neural cell | 1.85e-09 | 43 |
electrically responsive cell | 2.74e-09 | 39 |
electrically active cell | 2.74e-09 | 39 |
ectodermal cell | 3.71e-09 | 44 |
neurectodermal cell | 3.71e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.29e-18 | 73 |
nervous system | 1.34e-18 | 75 |
ectoderm-derived structure | 1.29e-16 | 95 |
ectoderm | 1.29e-16 | 95 |
presumptive ectoderm | 1.29e-16 | 95 |
regional part of nervous system | 2.36e-15 | 54 |
neurectoderm | 4.72e-15 | 64 |
neural plate | 4.72e-15 | 64 |
presumptive neural plate | 4.72e-15 | 64 |
neural tube | 2.11e-14 | 52 |
neural rod | 2.11e-14 | 52 |
future spinal cord | 2.11e-14 | 52 |
neural keel | 2.11e-14 | 52 |
gray matter | 1.27e-13 | 34 |
organ system subdivision | 8.64e-13 | 194 |
ecto-epithelium | 1.06e-12 | 73 |
brain | 2.53e-12 | 47 |
future brain | 2.53e-12 | 47 |
regional part of brain | 9.66e-12 | 46 |
pre-chordal neural plate | 1.68e-11 | 49 |
brain grey matter | 2.28e-11 | 29 |
regional part of telencephalon | 2.28e-11 | 29 |
telencephalon | 2.28e-11 | 29 |
anterior neural tube | 1.07e-10 | 40 |
regional part of forebrain | 3.38e-10 | 39 |
forebrain | 3.38e-10 | 39 |
future forebrain | 3.38e-10 | 39 |
structure with developmental contribution from neural crest | 9.94e-10 | 92 |
cerebral cortex | 1.10e-07 | 21 |
cerebral hemisphere | 1.10e-07 | 21 |
pallium | 1.10e-07 | 21 |