FFCP PHASE1:Mm9::chr13:59658715..59658733,-: Difference between revisions
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{{FFCP|EntrezGene=67269|HGNC=|MCL_coexpression_id=60|UniProt=E9Q3T5|association_with_transcript=-7bp_to_ENSMUST00000166585_5end|description=CAGE_peak_2_at_Agtpbp1_5end|id=chr13:59658715..59658733,-|ontology_enrichment_celltype=CL:0000117!1.20e-08!23;CL:0000337!1.20e-08!23;CL:0000540!1.55e-08!33;CL:0000047!1.55e-08!33;CL:0000031!1.55e-08!33;CL:0000404!1.55e-08!33;CL:0000393!5.45e-07!39;CL:0000211!5.45e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,4.82e-09,33;CL:0000047,4.82e-09,33;CL:0000031,4.82e-09,33;CL:0000404,4.82e-09,33;CL:0000117,7.21e-09,23;CL:0000337,7.21e-09,23;CL:0000393,4.90e-07,39;CL:0000211,4.90e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!3.01e-15!50;UBERON:0006238!3.01e-15!50;UBERON:0000033!3.74e-15!63;UBERON:0001049!7.10e-15!52;UBERON:0005068!7.10e-15!52;UBERON:0006241!7.10e-15!52;UBERON:0007135!7.10e-15!52;UBERON:0002616!1.04e-14!49;UBERON:0001017!2.49e-14!73;UBERON:0005743!2.49e-14!73;UBERON:0000073!3.09e-14!75;UBERON:0001016!3.09e-14!75;UBERON:0002020!1.54e-13!34;UBERON:0003056!7.03e-13!49;UBERON:0002791!9.89e-13!29;UBERON:0003528!9.89e-13!29;UBERON:0001893!9.89e-13!29;UBERON:0003080!1.45e-12!40;UBERON:0002346!3.77e-12!71;UBERON:0003075!3.77e-12!71;UBERON:0007284!3.77e-12!71;UBERON:0002780!6.00e-12!39;UBERON:0001890!6.00e-12!39;UBERON:0006240!6.00e-12!39;UBERON:0007811!6.75e-11!86;UBERON:0004121!1.46e-10!102;UBERON:0000924!1.46e-10!102;UBERON:0006601!1.46e-10!102;UBERON:0000956!8.64e-09!21;UBERON:0001869!8.64e-09!21;UBERON:0000203!8.64e-09!21;UBERON:0000153!1.52e-08!94;UBERON:0002021!2.40e-07!10;UBERON:0000411!2.40e-07!10;UBERON:0001950!2.40e-07!10;UBERON:0002619!3.89e-07!17;UBERON:0000025!6.19e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.76e-16,54;UBERON:0001017,4.41e-16,73;UBERON:0001016,5.73e-16,75;UBERON:0002346,6.08e-16,64;UBERON:0003075,6.08e-16,64;UBERON:0007284,6.08e-16,64;UBERON:0001049,1.48e-15,52;UBERON:0005068,1.48e-15,52;UBERON:0006241,1.48e-15,52;UBERON:0007135,1.48e-15,52;UBERON:0000955,1.50e-14,47;UBERON:0006238,1.50e-14,47;UBERON:0002020,4.59e-14,34;UBERON:0002616,5.42e-14,46;UBERON:0004121,6.97e-14,95;UBERON:0000924,6.97e-14,95;UBERON:0006601,6.97e-14,95;UBERON:0003528,1.92e-13,29;UBERON:0002791,1.92e-13,29;UBERON:0001893,1.92e-13,29;UBERON:0003056,1.93e-13,49;UBERON:0010371,3.24e-13,73;UBERON:0003080,4.28e-13,40;UBERON:0002780,1.92e-12,39;UBERON:0001890,1.92e-12,39;UBERON:0006240,1.92e-12,39;UBERON:0010314,1.23e-11,92;UBERON:0000956,2.94e-09,21;UBERON:0001869,2.94e-09,21;UBERON:0000203,2.94e-09,21;UBERON:0002021,1.05e-07,10;UBERON:0000411,1.05e-07,10;UBERON:0001950,1.05e-07,10;UBERON:0002619,1.67e-07,17|phase1_expression=1.44133962394315,0.348975407639361,0,0,0.500895729946347,0.16787927191189,0.233612640595526,1.29123323441576,0.281577444303333,0.936258105287974,0.513653904676515,0.797721589953364,0.342401459862411,0.961624426608971,0.666219523631325,0.607425802169478,0,1.57731082679119,2.05671650408608,3.39511721438424,3.23164502574065,0.595745707205312,0.261199789138935,0.319984845586813,0,0,0,0.215471232685889,0.190023419456374,0,0,3.17515336729816,1.23012957516914,0,0.288851619751275,0,0.408338712524738,1.67412652294763,2.3440060335714,2.09409497589519,2.35292595212406,1.36609096991689,4.36959317728038,1.6366586336825,1.11514624341466,0.917733760808408,0,0.65407546914134,0.659058548203415,0.388859798148567,0.419959264876088,0,2.01339127269284,0.725362142011344,0.672187598284928,1.54355661621568,0.85960031981627,0.515672092277442,2.42779753031517,1.05798195854407,2.53532561402472,0.677689064138264,0.889294796111139,0.449949858640699,0,1.4209602298922,0,0,2.48855069540346,2.02508907497536,3.36519938162211,0.856952953211411,1.54607978666129,2.81728838194394,2.87536413054709,1.83843757322004,2.20231761998777,5.74593021383345,4.6081959976873,3.16527090552465,4.29991924931325,3.12548022334056,4.4669279840221,2.25105044012672,4.43114918552749,4.12480019663135,4.12877874317399,4.28718725398191,1.21161909333094,1.5870027622425,0.579728977403356,0.860423876981386,0.679971333707751,0.539703191637817,0.649776417447669,0.448026887097336,0.842666520790511,0.852151612890289,1.55871602761721,0,1.12674735821344,0,0,0,0.432982082022428,0.760079596425296,0.505524445014783,0.45673551887624,1.29468941823586,0.593768556259299,1.73485326766136,0.913396434936424,0.922461989024234,0.60289056221049,0.823120949949934,0.376999773989026,0.741584903203122,1.73519228303894,0,0.647067399789637,1.10420759230197,2.42437626567611,0,5.27005434620785,3.97948742945565,0.510914110417183,1.67741174308288,1.79970819298022,0.889491589511453,6.44099749440738,5.03250663100489,3.26701315493447,5.04090528557602,3.83573185995496,5.40248915854856,4.38051410282946,1.12023300235348,2.23932547098167,0.252722758433675,1.26265113531884,1.69156575851515,1.37941262660084,1.44049703844279,1.50704817835715,1.97305847538851,1.0249097622788,2.24884138943349,4.9153640440413,0.431135985865684,0.567318240503458,0.879755620819744,0.65758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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:67269 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q3T5 | |||
|association_with_transcript=-7bp_to_ENSMUST00000166585_5end | |||
|cluster_id=chr13:59658715..59658733,- | |||
|description=CAGE_peak_2_at_Agtpbp1_5end | |||
|id=chr13:59658715..59658733,- | |||
|ontology_enrichment_celltype=CL:0000117!1.20e-08!23;CL:0000337!1.20e-08!23;CL:0000540!1.55e-08!33;CL:0000047!1.55e-08!33;CL:0000031!1.55e-08!33;CL:0000404!1.55e-08!33;CL:0000393!5.45e-07!39;CL:0000211!5.45e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.82e-09,33;CL:0000047,4.82e-09,33;CL:0000031,4.82e-09,33;CL:0000404,4.82e-09,33;CL:0000117,7.21e-09,23;CL:0000337,7.21e-09,23;CL:0000393,4.90e-07,39;CL:0000211,4.90e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!3.01e-15!50;UBERON:0006238!3.01e-15!50;UBERON:0000033!3.74e-15!63;UBERON:0001049!7.10e-15!52;UBERON:0005068!7.10e-15!52;UBERON:0006241!7.10e-15!52;UBERON:0007135!7.10e-15!52;UBERON:0002616!1.04e-14!49;UBERON:0001017!2.49e-14!73;UBERON:0005743!2.49e-14!73;UBERON:0000073!3.09e-14!75;UBERON:0001016!3.09e-14!75;UBERON:0002020!1.54e-13!34;UBERON:0003056!7.03e-13!49;UBERON:0002791!9.89e-13!29;UBERON:0003528!9.89e-13!29;UBERON:0001893!9.89e-13!29;UBERON:0003080!1.45e-12!40;UBERON:0002346!3.77e-12!71;UBERON:0003075!3.77e-12!71;UBERON:0007284!3.77e-12!71;UBERON:0002780!6.00e-12!39;UBERON:0001890!6.00e-12!39;UBERON:0006240!6.00e-12!39;UBERON:0007811!6.75e-11!86;UBERON:0004121!1.46e-10!102;UBERON:0000924!1.46e-10!102;UBERON:0006601!1.46e-10!102;UBERON:0000956!8.64e-09!21;UBERON:0001869!8.64e-09!21;UBERON:0000203!8.64e-09!21;UBERON:0000153!1.52e-08!94;UBERON:0002021!2.40e-07!10;UBERON:0000411!2.40e-07!10;UBERON:0001950!2.40e-07!10;UBERON:0002619!3.89e-07!17;UBERON:0000025!6.19e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.76e-16,54;UBERON:0001017,4.41e-16,73;UBERON:0001016,5.73e-16,75;UBERON:0002346,6.08e-16,64;UBERON:0003075,6.08e-16,64;UBERON:0007284,6.08e-16,64;UBERON:0001049,1.48e-15,52;UBERON:0005068,1.48e-15,52;UBERON:0006241,1.48e-15,52;UBERON:0007135,1.48e-15,52;UBERON:0000955,1.50e-14,47;UBERON:0006238,1.50e-14,47;UBERON:0002020,4.59e-14,34;UBERON:0002616,5.42e-14,46;UBERON:0004121,6.97e-14,95;UBERON:0000924,6.97e-14,95;UBERON:0006601,6.97e-14,95;UBERON:0003528,1.92e-13,29;UBERON:0002791,1.92e-13,29;UBERON:0001893,1.92e-13,29;UBERON:0003056,1.93e-13,49;UBERON:0010371,3.24e-13,73;UBERON:0003080,4.28e-13,40;UBERON:0002780,1.92e-12,39;UBERON:0001890,1.92e-12,39;UBERON:0006240,1.92e-12,39;UBERON:0010314,1.23e-11,92;UBERON:0000956,2.94e-09,21;UBERON:0001869,2.94e-09,21;UBERON:0000203,2.94e-09,21;UBERON:0002021,1.05e-07,10;UBERON:0000411,1.05e-07,10;UBERON:0001950,1.05e-07,10;UBERON:0002619,1.67e-07,17 | |||
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| |||
|short_description=p2@Agtpbp1 | |||
}} |
Revision as of 05:24, 6 August 2015
Short description: | p2@Agtpbp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Agtpbp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -7bp_to_ENSMUST00000166585_5end |
EntrezGene: | 67269 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.82e-09 | 33 |
neuronal stem cell | 4.82e-09 | 33 |
neuroblast | 4.82e-09 | 33 |
electrically signaling cell | 4.82e-09 | 33 |
CNS neuron (sensu Vertebrata) | 7.21e-09 | 23 |
neuroblast (sensu Vertebrata) | 7.21e-09 | 23 |
electrically responsive cell | 4.90e-07 | 39 |
electrically active cell | 4.90e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.76e-16 | 54 |
central nervous system | 4.41e-16 | 73 |
nervous system | 5.73e-16 | 75 |
neurectoderm | 6.08e-16 | 64 |
neural plate | 6.08e-16 | 64 |
presumptive neural plate | 6.08e-16 | 64 |
neural tube | 1.48e-15 | 52 |
neural rod | 1.48e-15 | 52 |
future spinal cord | 1.48e-15 | 52 |
neural keel | 1.48e-15 | 52 |
brain | 1.50e-14 | 47 |
future brain | 1.50e-14 | 47 |
gray matter | 4.59e-14 | 34 |
regional part of brain | 5.42e-14 | 46 |
ectoderm-derived structure | 6.97e-14 | 95 |
ectoderm | 6.97e-14 | 95 |
presumptive ectoderm | 6.97e-14 | 95 |
brain grey matter | 1.92e-13 | 29 |
regional part of telencephalon | 1.92e-13 | 29 |
telencephalon | 1.92e-13 | 29 |
pre-chordal neural plate | 1.93e-13 | 49 |
ecto-epithelium | 3.24e-13 | 73 |
anterior neural tube | 4.28e-13 | 40 |
regional part of forebrain | 1.92e-12 | 39 |
forebrain | 1.92e-12 | 39 |
future forebrain | 1.92e-12 | 39 |
structure with developmental contribution from neural crest | 1.23e-11 | 92 |
cerebral cortex | 2.94e-09 | 21 |
cerebral hemisphere | 2.94e-09 | 21 |
pallium | 2.94e-09 | 21 |
occipital lobe | 1.05e-07 | 10 |
visual cortex | 1.05e-07 | 10 |
neocortex | 1.05e-07 | 10 |
regional part of cerebral cortex | 1.67e-07 | 17 |