FFCP PHASE1:Mm9::chr5:116009497..116009508,+: Difference between revisions
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{{FFCP|EntrezGene=11837|HGNC=|MCL_coexpression_id=0|UniProt=P14869,Q5M8R8|association_with_transcript=21bp_to_ENSMUST00000086519,NM_007475,uc008zed.2_5end|description=CAGE_peak_2_at_Rplp0_5end|id=chr5:116009497..116009508,+|ontology_enrichment_celltype=CL:0000723!1.50e-08!91;CL:0000048!1.50e-08!91;CL:0000034!1.64e-08!97;CL:0000548!1.15e-07!115;CL:0000004!1.15e-07!115;CL:0000255!1.15e-07!115;CL:0000144!2.04e-07!121;CL:0000012!2.04e-07!121;CL:0000117!2.56e-07!23;CL:0000337!2.56e-07!23;CL:0002371!3.72e-07!118;CL:0000221!8.94e-07!44;CL:0000133!8.94e-07!44;CL:0000055!8.95e-07!50|ontology_enrichment_celltype_v019_2=CL:0000034,5.17e-09,97;CL:0000723,5.60e-09,91;CL:0000048,5.60e-09,91;CL:0000117,1.67e-07,23;CL:0000337,1.67e-07,23;CL:0000221,5.10e-07,44;CL:0000133,5.10e-07,44;CL:0002319,5.75e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.48e-11!73;UBERON:0005743!1.48e-11!73;UBERON:0000073!1.85e-11!75;UBERON:0001016!1.85e-11!75;UBERON:0001049!7.45e-11!52;UBERON:0005068!7.45e-11!52;UBERON:0006241!7.45e-11!52;UBERON:0007135!7.45e-11!52;UBERON:0002020!1.32e-10!34;UBERON:0002616!6.95e-10!49;UBERON:0003080!1.39e-09!40;UBERON:0000955!1.79e-09!50;UBERON:0006238!1.79e-09!50;UBERON:0002791!1.94e-09!29;UBERON:0003528!1.94e-09!29;UBERON:0001893!1.94e-09!29;UBERON:0002780!3.61e-09!39;UBERON:0001890!3.61e-09!39;UBERON:0006240!3.61e-09!39;UBERON:0000956!2.22e-07!21;UBERON:0001869!2.22e-07!21;UBERON:0000203!2.22e-07!21;UBERON:0002619!3.04e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.34e-11,73;UBERON:0001016,1.67e-11,75;UBERON:0000073,3.00e-11,54;UBERON:0001049,5.67e-11,52;UBERON:0005068,5.67e-11,52;UBERON:0006241,5.67e-11,52;UBERON:0007135,5.67e-11,52;UBERON:0002020,6.77e-11,34;UBERON:0003080,8.23e-10,40;UBERON:0003528,1.08e-09,29;UBERON:0002791,1.08e-09,29;UBERON:0001893,1.08e-09,29;UBERON:0002616,1.97e-09,46;UBERON:0002780,2.20e-09,39;UBERON:0001890,2.20e-09,39;UBERON:0006240,2.20e-09,39;UBERON:0010314,5.26e-09,92;UBERON:0000955,8.23e-09,47;UBERON:0006238,8.23e-09,47;UBERON:0002346,1.29e-07,64;UBERON:0003075,1.29e-07,64;UBERON:0007284,1.29e-07,64;UBERON:0000956,1.44e-07,21;UBERON:0001869,1.44e-07,21;UBERON:0000203,1.44e-07,21;UBERON:0002619,2.00e-07,17;UBERON:0004121,6.64e-07,95;UBERON:0000924,6.64e-07,95;UBERON:0006601,6.64e-07,95|phase1_expression=0.640595388419176,1.04692622291808,0.909998478779072,0.90739263392049,0,0.503637815735669,1.40167584357315,1.03298658753261,4.22366166455,2.10658073689794,3.08192342805909,1.83475965689274,2.22560948910567,0.524522414513984,2.99798785634096,1.61980213911861,2.09868563438444,3.3123527362615,2.05671650408608,2.12194825899015,5.3577272795174,2.6808556824239,4.4403964153619,0.159992422793407,0.68822784320151,0.57423196411502,0.430761996159075,1.50829862880122,1.33016393619462,1.76421090831952,1.99557459589774,3.17515336729816,1.23012957516914,0,1.73310971850765,1.49611180822643,1.63335485009895,0.418531630736908,0.7813353445238,2.09409497589519,0.588231488031014,0.683045484958446,0,0.755380907853464,1.72340783073175,0.917733760808408,1.56478268869608,2.39827672018491,4.17403747195497,2.3331587888914,1.95980990275508,2.87505128729943,2.68452169692378,3.62681071005672,1.34437519656986,3.08711323243136,4.01146815914259,5.15672092277442,2.83243045203437,6.34789175126439,5.70448263155561,3.38844532069132,2.66788438833342,10.3488467487361,5.93319817540185,11.3676818391376,2.69640099466564,4.61061966385865,1.76272340924412,1.89008313664367,1.47227472945967,3.14216082844184,4.63823935998388,2.20483438586917,1.62937300731002,3.67687514644008,1.10115880999389,4.46905683298157,3.07213066512487,5.01167893374737,3.65950574409639,2.08365348222704,2.79182999001381,6.19038871034848,3.66715794664344,1.47314292736834,2.56269025438385,2.05039390407831,1.8931548333296,1.13357340160178,0.869593466105033,0.860423876981386,2.03991400112325,1.61910957491345,0,1.34408066129201,1.68533304158102,0.681721290312231,1.03914401841148,0.70667914902068,1.69012103732017,2.56652954828636,0,0,1.73192832808971,2.28023878927589,4.04419556011827,0.79928715803342,0.517875767294343,1.63286352971307,1.38788261412909,0.913396434936424,0.922461989024234,1.50722640552623,1.05829836422134,1.0053327306374,0.741584903203122,1.73519228303894,0.884610551949874,2.58826959915855,1.76673214768315,1.93950101254089,0,0.878342391034642,1.46612694769419,0.766371165625774,3.47463861067169,7.7987355029143,5.46401976414178,3.2953940669061,1.37250180845588,1.50785222535437,2.78118912307642,2.30143911597297,2.70124457927428,2.27137768294861,1.42575109390443,1.36847667671102,3.0326731012041,0.210441855886474,1.17108398666433,1.37941262660084,1.26043490863744,0.753524089178575,0.816437989815934,1.15302348256365,1.03071897015702,1.03481348295606,2.80238390812695,0.945530400839096,1.40760899331159,1.09597866213787,1.39023624612799,1.0447564995665,0.61734640922383,0.796137067273973,3.51106593656617,3.86021860672073,4.54661599032948,1.44988040774851,0.938104239924385,1.26043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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11837 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P14869,uniprot:Q5M8R8 | |||
|association_with_transcript=21bp_to_ENSMUST00000086519,NM_007475,uc008zed.2_5end | |||
|cluster_id=chr5:116009497..116009508,+ | |||
|description=CAGE_peak_2_at_Rplp0_5end | |||
|id=chr5:116009497..116009508,+ | |||
|ontology_enrichment_celltype=CL:0000723!1.50e-08!91;CL:0000048!1.50e-08!91;CL:0000034!1.64e-08!97;CL:0000548!1.15e-07!115;CL:0000004!1.15e-07!115;CL:0000255!1.15e-07!115;CL:0000144!2.04e-07!121;CL:0000012!2.04e-07!121;CL:0000117!2.56e-07!23;CL:0000337!2.56e-07!23;CL:0002371!3.72e-07!118;CL:0000221!8.94e-07!44;CL:0000133!8.94e-07!44;CL:0000055!8.95e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,5.17e-09,97;CL:0000723,5.60e-09,91;CL:0000048,5.60e-09,91;CL:0000117,1.67e-07,23;CL:0000337,1.67e-07,23;CL:0000221,5.10e-07,44;CL:0000133,5.10e-07,44;CL:0002319,5.75e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.48e-11!73;UBERON:0005743!1.48e-11!73;UBERON:0000073!1.85e-11!75;UBERON:0001016!1.85e-11!75;UBERON:0001049!7.45e-11!52;UBERON:0005068!7.45e-11!52;UBERON:0006241!7.45e-11!52;UBERON:0007135!7.45e-11!52;UBERON:0002020!1.32e-10!34;UBERON:0002616!6.95e-10!49;UBERON:0003080!1.39e-09!40;UBERON:0000955!1.79e-09!50;UBERON:0006238!1.79e-09!50;UBERON:0002791!1.94e-09!29;UBERON:0003528!1.94e-09!29;UBERON:0001893!1.94e-09!29;UBERON:0002780!3.61e-09!39;UBERON:0001890!3.61e-09!39;UBERON:0006240!3.61e-09!39;UBERON:0000956!2.22e-07!21;UBERON:0001869!2.22e-07!21;UBERON:0000203!2.22e-07!21;UBERON:0002619!3.04e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.34e-11,73;UBERON:0001016,1.67e-11,75;UBERON:0000073,3.00e-11,54;UBERON:0001049,5.67e-11,52;UBERON:0005068,5.67e-11,52;UBERON:0006241,5.67e-11,52;UBERON:0007135,5.67e-11,52;UBERON:0002020,6.77e-11,34;UBERON:0003080,8.23e-10,40;UBERON:0003528,1.08e-09,29;UBERON:0002791,1.08e-09,29;UBERON:0001893,1.08e-09,29;UBERON:0002616,1.97e-09,46;UBERON:0002780,2.20e-09,39;UBERON:0001890,2.20e-09,39;UBERON:0006240,2.20e-09,39;UBERON:0010314,5.26e-09,92;UBERON:0000955,8.23e-09,47;UBERON:0006238,8.23e-09,47;UBERON:0002346,1.29e-07,64;UBERON:0003075,1.29e-07,64;UBERON:0007284,1.29e-07,64;UBERON:0000956,1.44e-07,21;UBERON:0001869,1.44e-07,21;UBERON:0000203,1.44e-07,21;UBERON:0002619,2.00e-07,17;UBERON:0004121,6.64e-07,95;UBERON:0000924,6.64e-07,95;UBERON:0006601,6.64e-07,95 | |||
|phase1_expression=0.640595388419176,1.04692622291808,0.909998478779072,0.90739263392049,0,0.503637815735669,1.40167584357315,1.03298658753261,4.22366166455,2.10658073689794,3.08192342805909,1.83475965689274,2.22560948910567,0.524522414513984,2.99798785634096,1.61980213911861,2.09868563438444,3.3123527362615,2.05671650408608,2.12194825899015,5.3577272795174,2.6808556824239,4.4403964153619,0.159992422793407,0.68822784320151,0.57423196411502,0.430761996159075,1.50829862880122,1.33016393619462,1.76421090831952,1.99557459589774,3.17515336729816,1.23012957516914,0,1.73310971850765,1.49611180822643,1.63335485009895,0.418531630736908,0.7813353445238,2.09409497589519,0.588231488031014,0.683045484958446,0,0.755380907853464,1.72340783073175,0.917733760808408,1.56478268869608,2.39827672018491,4.17403747195497,2.3331587888914,1.95980990275508,2.87505128729943,2.68452169692378,3.62681071005672,1.34437519656986,3.08711323243136,4.01146815914259,5.15672092277442,2.83243045203437,6.34789175126439,5.70448263155561,3.38844532069132,2.66788438833342,10.3488467487361,5.93319817540185,11.3676818391376,2.69640099466564,4.61061966385865,1.76272340924412,1.89008313664367,1.47227472945967,3.14216082844184,4.63823935998388,2.20483438586917,1.62937300731002,3.67687514644008,1.10115880999389,4.46905683298157,3.07213066512487,5.01167893374737,3.65950574409639,2.08365348222704,2.79182999001381,6.19038871034848,3.66715794664344,1.47314292736834,2.56269025438385,2.05039390407831,1.8931548333296,1.13357340160178,0.869593466105033,0.860423876981386,2.03991400112325,1.61910957491345,0,1.34408066129201,1.68533304158102,0.681721290312231,1.03914401841148,0.70667914902068,1.69012103732017,2.56652954828636,0,0,1.73192832808971,2.28023878927589,4.04419556011827,0.79928715803342,0.517875767294343,1.63286352971307,1.38788261412909,0.913396434936424,0.922461989024234,1.50722640552623,1.05829836422134,1.0053327306374,0.741584903203122,1.73519228303894,0.884610551949874,2.58826959915855,1.76673214768315,1.93950101254089,0,0.878342391034642,1.46612694769419,0.766371165625774,3.47463861067169,7.7987355029143,5.46401976414178,3.2953940669061,1.37250180845588,1.50785222535437,2.78118912307642,2.30143911597297,2.70124457927428,2.27137768294861,1.42575109390443,1.36847667671102,3.0326731012041,0.210441855886474,1.17108398666433,1.37941262660084,1.26043490863744,0.753524089178575,0.816437989815934,1.15302348256365,1.03071897015702,1.03481348295606,2.80238390812695,0.945530400839096,1.40760899331159,1.09597866213787,1.39023624612799,1.0447564995665,0.61734640922383,0.796137067273973,3.51106593656617,3.86021860672073,4.54661599032948,1.44988040774851,0.938104239924385,1.2604344302271,2.13070262026689,2.16440654922144,1.69693824176116,1.62773761325285,3.48755421819505,2.6856028744449,1.48103864922132,1.47750717671186,2.83740833410495,4.09359964790931,2.85415149878366,4.83143107537338,2.52347938276953,1.9551876352064,0.660837565967596,0.528901133327089,0.639864751605702,1.62565670302307,0.515469845288373,0.605050573870028,0.444756087689741,0.760902504450237,0,1.31759163779209,1.00534083520108,0.795825888164603,0.19496408711912,0,1.08069024937347,1.59313018603494,1.13800740571849,0.913988100877831,0,0.814605311381257,1.16371492300575,0.561086559122548,0.758838445491087,0.738050739898011,0.31399745568275,1.1105744752962,0.592905254174298,1.50160595144485,2.35870794135844,0.449724224769707,2.23146133527353,1.68824011826692,0.763877555344259,0.287696137450811,0.324270453550071,1.09824565275233,1.43768206527355,0,0.312037673114561,0,0.358794827043824,0,0.369506380333209,1.70542270593436,0.814824882210129,0.509235257325564,0.704070744865506,0.502518772325447,0.952174563544055,0.585400943573396,0.315270288212382,0.44292937929755,0.797273843287435,0.327726629431476,1.55416483679306,0.723245292907558,0,1.08781136763742,0.491764273019036,1.37968373152366,2.72936002979246,1.52375192569864,1.96721934452011,4.79694761688309,1.57754109708128,3.12350995437311,0.430846795465598,1.43381278771531,1.55959071857676,0.566153061577665,1.21443210502468,2.63030272120181,0.790575555893047,0.963963949265421,0.851640511249612,0.890328018336276,0.651547837414304,1.15479086080775,0,0.971122544619926,1.81394134178851,1.13163047853539,0.590603785761546,1.22974059177571,0.516856586336442,1.09060118843252,1.42598951353889,0.632073515871632,3.16255825724996,0,1.02131881726136,1.62054984628179,1.68166288917581,1.28602221018955,0.709360934569094,1.78368817602071,2.30368628842969,3.95804433848979,1.64270195644597,1.0591603543191,1.7642271844397,0.65954501176592,0.484393280087717,1.38719727334758,2.02932984805332,0.820704498725306,0.874442509889552,2.41052892613663,1.36696704638282,0.82554747185289,0.740778109478847,0.753473828018764,0.820165366326151,1.60144721244566,1.35982743995084,1.53946597556024,3.31679937130617,0.954670618015114,0.474503990371703,1.42323626988794,0.972048067396211,1.25452977608681,1.09181281873089,1.07891477107857,1.40510874733071,0.785267825952089,2.20345454596048,1.24267862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| |||
|short_description=p2@Rplp0 | |||
}} |
Revision as of 03:10, 6 August 2015
Short description: | p2@Rplp0 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rplp0_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 21bp_to_ENSMUST00000086519, NM_007475, uc008zed.2_5end |
EntrezGene: | 11837 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 5.17e-09 | 97 |
somatic stem cell | 5.60e-09 | 91 |
multi fate stem cell | 5.60e-09 | 91 |
CNS neuron (sensu Vertebrata) | 1.67e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.67e-07 | 23 |
ectodermal cell | 5.10e-07 | 44 |
neurectodermal cell | 5.10e-07 | 44 |
neural cell | 5.75e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.34e-11 | 73 |
nervous system | 1.67e-11 | 75 |
regional part of nervous system | 3.00e-11 | 54 |
neural tube | 5.67e-11 | 52 |
neural rod | 5.67e-11 | 52 |
future spinal cord | 5.67e-11 | 52 |
neural keel | 5.67e-11 | 52 |
gray matter | 6.77e-11 | 34 |
anterior neural tube | 8.23e-10 | 40 |
brain grey matter | 1.08e-09 | 29 |
regional part of telencephalon | 1.08e-09 | 29 |
telencephalon | 1.08e-09 | 29 |
regional part of brain | 1.97e-09 | 46 |
regional part of forebrain | 2.20e-09 | 39 |
forebrain | 2.20e-09 | 39 |
future forebrain | 2.20e-09 | 39 |
structure with developmental contribution from neural crest | 5.26e-09 | 92 |
brain | 8.23e-09 | 47 |
future brain | 8.23e-09 | 47 |
neurectoderm | 1.29e-07 | 64 |
neural plate | 1.29e-07 | 64 |
presumptive neural plate | 1.29e-07 | 64 |
cerebral cortex | 1.44e-07 | 21 |
cerebral hemisphere | 1.44e-07 | 21 |
pallium | 1.44e-07 | 21 |
regional part of cerebral cortex | 2.00e-07 | 17 |
ectoderm-derived structure | 6.64e-07 | 95 |
ectoderm | 6.64e-07 | 95 |
presumptive ectoderm | 6.64e-07 | 95 |