FFCP PHASE1:Mm9::chr13:49415588..49415658,-: Difference between revisions
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{{FFCP|EntrezGene=30938|HGNC=|UniProt=O88842|association_with_transcript=21bp_to_ENSMUST00000110086,uc007qje.1_5end|description=CAGE_peak_1_at_Fgd3_5end|id=chr13:49415588..49415658,-|ontology_enrichment_celltype=CL:0002319!4.93e-18!43;CL:0000221!5.16e-18!44;CL:0000133!5.16e-18!44;CL:0000055!1.44e-17!50;CL:0000393!7.88e-14!39;CL:0000211!7.88e-14!39;CL:0000540!2.06e-13!33;CL:0000047!2.06e-13!33;CL:0000031!2.06e-13!33;CL:0000404!2.06e-13!33;CL:0000117!5.24e-13!23;CL:0000337!5.24e-13!23;CL:0002321!1.75e-11!70;CL:0000220!1.75e-11!70|ontology_enrichment_celltype_v019_2=CL:0002319,8.58e-21,43;CL:0000221,9.05e-21,44;CL:0000133,9.05e-21,44;CL:0002321,3.03e-15,70;CL:0000393,3.20e-15,39;CL:0000211,3.20e-15,39;CL:0000540,3.90e-15,33;CL:0000047,3.90e-15,33;CL:0000031,3.90e-15,33;CL:0000404,3.90e-15,33;CL:0000117,5.97e-15,23;CL:0000337,5.97e-15,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.35e-32!75;UBERON:0001016!7.35e-32!75;UBERON:0004121!1.03e-30!102;UBERON:0000924!1.03e-30!102;UBERON:0006601!1.03e-30!102;UBERON:0001017!2.45e-30!73;UBERON:0005743!2.45e-30!73;UBERON:0002346!4.19e-25!71;UBERON:0003075!4.19e-25!71;UBERON:0007284!4.19e-25!71;UBERON:0000033!1.46e-22!63;UBERON:0001049!2.63e-22!52;UBERON:0005068!2.63e-22!52;UBERON:0006241!2.63e-22!52;UBERON:0007135!2.63e-22!52;UBERON:0000955!9.86e-22!50;UBERON:0006238!9.86e-22!50;UBERON:0002616!5.32e-21!49;UBERON:0003056!6.27e-19!49;UBERON:0002020!2.88e-17!34;UBERON:0003080!2.95e-17!40;UBERON:0002780!9.45e-17!39;UBERON:0001890!9.45e-17!39;UBERON:0006240!9.45e-17!39;UBERON:0002791!5.72e-15!29;UBERON:0003528!5.72e-15!29;UBERON:0001893!5.72e-15!29;UBERON:0007811!2.12e-11!86;UBERON:0000153!1.12e-10!94;UBERON:0000956!1.37e-10!21;UBERON:0001869!1.37e-10!21;UBERON:0000203!1.37e-10!21;UBERON:0002619!6.09e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.85e-37,75;UBERON:0001017,1.75e-35,73;UBERON:0004121,2.43e-33,95;UBERON:0000924,2.43e-33,95;UBERON:0006601,2.43e-33,95;UBERON:0002346,1.26e-28,64;UBERON:0003075,1.26e-28,64;UBERON:0007284,1.26e-28,64;UBERON:0000073,8.45e-28,54;UBERON:0001049,2.20e-26,52;UBERON:0005068,2.20e-26,52;UBERON:0006241,2.20e-26,52;UBERON:0007135,2.20e-26,52;UBERON:0000955,1.45e-23,47;UBERON:0006238,1.45e-23,47;UBERON:0002616,1.02e-22,46;UBERON:0010371,1.45e-22,73;UBERON:0003056,3.88e-22,49;UBERON:0003080,3.45e-20,40;UBERON:0002020,6.17e-20,34;UBERON:0010314,1.26e-19,92;UBERON:0002780,1.35e-19,39;UBERON:0001890,1.35e-19,39;UBERON:0006240,1.35e-19,39;UBERON:0003528,3.02e-17,29;UBERON:0002791,3.02e-17,29;UBERON:0001893,3.02e-17,29;UBERON:0000956,4.01e-12,21;UBERON:0001869,4.01e-12,21;UBERON:0000203,4.01e-12,21;UBERON:0002619,3.39e-10,17|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,0,0,0,0,0,1.61582251287033,1.09220046320974,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26614272356039,2.93993100536592,11.9305388905093,0,14.3896603211095,18.2339531669612,27.414615769474,3.91961980551015,11.5002051491977,0,0,0,1.02903774414379,0.286533439938757,1.03134418455488,5.66486090406874,5.28990979272033,8.87363964908651,0.677689064138264,0.889294796111139,2.2497492932035,1.97773272513395,2.1314403448383,10.7856039786626,7.30014780110954,5.49554945234932,6.75029691658453,4.83747411108179,4.85606673486466,6.40518768759679,12.8615339175702,9.58454710182364,23.8996884518605,9.91042928994498,6.63974158042976,7.83393319606842,10.1552441552249,9.97215315266265,9.37644067002168,6.70039197603314,4.50210088025344,7.18151764551008,5.89257170947335,5.12538050876771,5.77838282058432,7.95125029998433,24.9386148352392,0,0,0,0,0,0,0.983110940922263,12.1005529030421,8.05336614268893,7.77347063922748,1.69012103732017,25.6652954828636,10.1922095882658,35.5533351576666,2.81438353314578,5.06719730950197,3.53867111510348,0.11418387971906,0,4.30482203287992,1.04091196059682,1.21786191324856,2.07553947530453,1.95939432718409,1.64624189989987,2.51333182659351,0.247194967734374,0,0,1.94120219936891,1.54589062922275,1.93950101254089,0,7.31951992528868,7.33063473847093,0,0,0,0,5.99162557619291,5.49000723382352,15.9581027183338,4.51943232499919,5.8814555185976,8.51930982694196,6.48965052271031,0.407357455401265,1.49288364732112,0,1.26265113531884,2.86264974517948,2.98872735763515,1.98068342785884,2.41127708537144,3.6739709541717,3.07472928683639,2.99845518591132,1.81092359517311,1.5089759505299,2.45837904218165,1.75951124163949,0.657587197282725,0.556094498451196,0,0.205782136407943,0.59710280045548,0,0,0,1.03562886267751,0.703578179943289,0.36012412292203,0.710234206755631,0,0.154267112887378,0.232533944750408,0,0.116765342367169,0,0,0,0.146199987425332,0,0,2.3131894342054,12.8630765474106,0,0,1.91959425481711,1.85789337488351,0,0.201683524623343,0.22237804384487,0,0,0,0,0.198956472041151,0,0.898819408654221,0,0,0.379335801906163,0.685491075658373,0,0,0.193952487167626,0.140271639780637,0.379419222745544,0.885660887877613,0.784993639206874,0.740382983530803,0,0.166845105716094,0,0,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:30938 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O88842 | |||
|association_with_transcript=21bp_to_ENSMUST00000110086,uc007qje.1_5end | |||
|cluster_id=chr13:49415588..49415658,- | |||
|description=CAGE_peak_1_at_Fgd3_5end | |||
|id=chr13:49415588..49415658,- | |||
|ontology_enrichment_celltype=CL:0002319!4.93e-18!43;CL:0000221!5.16e-18!44;CL:0000133!5.16e-18!44;CL:0000055!1.44e-17!50;CL:0000393!7.88e-14!39;CL:0000211!7.88e-14!39;CL:0000540!2.06e-13!33;CL:0000047!2.06e-13!33;CL:0000031!2.06e-13!33;CL:0000404!2.06e-13!33;CL:0000117!5.24e-13!23;CL:0000337!5.24e-13!23;CL:0002321!1.75e-11!70;CL:0000220!1.75e-11!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.58e-21,43;CL:0000221,9.05e-21,44;CL:0000133,9.05e-21,44;CL:0002321,3.03e-15,70;CL:0000393,3.20e-15,39;CL:0000211,3.20e-15,39;CL:0000540,3.90e-15,33;CL:0000047,3.90e-15,33;CL:0000031,3.90e-15,33;CL:0000404,3.90e-15,33;CL:0000117,5.97e-15,23;CL:0000337,5.97e-15,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.35e-32!75;UBERON:0001016!7.35e-32!75;UBERON:0004121!1.03e-30!102;UBERON:0000924!1.03e-30!102;UBERON:0006601!1.03e-30!102;UBERON:0001017!2.45e-30!73;UBERON:0005743!2.45e-30!73;UBERON:0002346!4.19e-25!71;UBERON:0003075!4.19e-25!71;UBERON:0007284!4.19e-25!71;UBERON:0000033!1.46e-22!63;UBERON:0001049!2.63e-22!52;UBERON:0005068!2.63e-22!52;UBERON:0006241!2.63e-22!52;UBERON:0007135!2.63e-22!52;UBERON:0000955!9.86e-22!50;UBERON:0006238!9.86e-22!50;UBERON:0002616!5.32e-21!49;UBERON:0003056!6.27e-19!49;UBERON:0002020!2.88e-17!34;UBERON:0003080!2.95e-17!40;UBERON:0002780!9.45e-17!39;UBERON:0001890!9.45e-17!39;UBERON:0006240!9.45e-17!39;UBERON:0002791!5.72e-15!29;UBERON:0003528!5.72e-15!29;UBERON:0001893!5.72e-15!29;UBERON:0007811!2.12e-11!86;UBERON:0000153!1.12e-10!94;UBERON:0000956!1.37e-10!21;UBERON:0001869!1.37e-10!21;UBERON:0000203!1.37e-10!21;UBERON:0002619!6.09e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.85e-37,75;UBERON:0001017,1.75e-35,73;UBERON:0004121,2.43e-33,95;UBERON:0000924,2.43e-33,95;UBERON:0006601,2.43e-33,95;UBERON:0002346,1.26e-28,64;UBERON:0003075,1.26e-28,64;UBERON:0007284,1.26e-28,64;UBERON:0000073,8.45e-28,54;UBERON:0001049,2.20e-26,52;UBERON:0005068,2.20e-26,52;UBERON:0006241,2.20e-26,52;UBERON:0007135,2.20e-26,52;UBERON:0000955,1.45e-23,47;UBERON:0006238,1.45e-23,47;UBERON:0002616,1.02e-22,46;UBERON:0010371,1.45e-22,73;UBERON:0003056,3.88e-22,49;UBERON:0003080,3.45e-20,40;UBERON:0002020,6.17e-20,34;UBERON:0010314,1.26e-19,92;UBERON:0002780,1.35e-19,39;UBERON:0001890,1.35e-19,39;UBERON:0006240,1.35e-19,39;UBERON:0003528,3.02e-17,29;UBERON:0002791,3.02e-17,29;UBERON:0001893,3.02e-17,29;UBERON:0000956,4.01e-12,21;UBERON:0001869,4.01e-12,21;UBERON:0000203,4.01e-12,21;UBERON:0002619,3.39e-10,17 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666219523631325,0,0,0,0,0,1.61582251287033,1.09220046320974,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26614272356039,2.93993100536592,11.9305388905093,0,14.3896603211095,18.2339531669612,27.414615769474,3.91961980551015,11.5002051491977,0,0,0,1.02903774414379,0.286533439938757,1.03134418455488,5.66486090406874,5.28990979272033,8.87363964908651,0.677689064138264,0.889294796111139,2.2497492932035,1.97773272513395,2.1314403448383,10.7856039786626,7.30014780110954,5.49554945234932,6.75029691658453,4.83747411108179,4.85606673486466,6.40518768759679,12.8615339175702,9.58454710182364,23.8996884518605,9.91042928994498,6.63974158042976,7.83393319606842,10.1552441552249,9.97215315266265,9.37644067002168,6.70039197603314,4.50210088025344,7.18151764551008,5.89257170947335,5.12538050876771,5.77838282058432,7.95125029998433,24.9386148352392,0,0,0,0,0,0,0.983110940922263,12.1005529030421,8.05336614268893,7.77347063922748,1.69012103732017,25.6652954828636,10.1922095882658,35.5533351576666,2.81438353314578,5.06719730950197,3.53867111510348,0.11418387971906,0,4.30482203287992,1.04091196059682,1.21786191324856,2.07553947530453,1.95939432718409,1.64624189989987,2.51333182659351,0.247194967734374,0,0,1.94120219936891,1.54589062922275,1.93950101254089,0,7.31951992528868,7.33063473847093,0,0,0,0,5.99162557619291,5.49000723382352,15.9581027183338,4.51943232499919,5.8814555185976,8.51930982694196,6.48965052271031,0.407357455401265,1.49288364732112,0,1.26265113531884,2.86264974517948,2.98872735763515,1.98068342785884,2.41127708537144,3.6739709541717,3.07472928683639,2.99845518591132,1.81092359517311,1.5089759505299,2.45837904218165,1.75951124163949,0.657587197282725,0.556094498451196,0,0.205782136407943,0.59710280045548,0,0,0,1.03562886267751,0.703578179943289,0.36012412292203,0.710234206755631,0,0.154267112887378,0.232533944750408,0,0.116765342367169,0,0,0,0.146199987425332,0,0,2.3131894342054,12.8630765474106,0,0,1.91959425481711,1.85789337488351,0,0.201683524623343,0.22237804384487,0,0,0,0,0.198956472041151,0,0.898819408654221,0,0,0.379335801906163,0.685491075658373,0,0,0.193952487167626,0.140271639780637,0.379419222745544,0.885660887877613,0.784993639206874,0.740382983530803,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0.757965647081939,1.95557971730431,0.509235257325564,0.234690248288502,0.335012514883631,0,0.195133647857799,0.157635144106191,0,0,0.163863314715738,0.172684981865896,0,0,1.08781136763742,0,0,8.66973185934077,5.62616095642575,4.59017847054691,1.51482556322624,2.2085575359138,1.17131623288992,1.50796378412959,2.15071918157297,7.5751549188014,12.4553673547086,1.21443210502468,1.46127928955656,2.37172666767914,13.4954952897159,6.38730383437209,0.178065603667255,0.325773918707152,0.494910368917606,0,0.485561272309963,0,0,0,0,0,0.363533729477506,0,0,0,0,0,4.32146625675145,5.56242340265844,3.85806663056866,2.30542303734956,1.78368817602071,3.29098041204242,2.74018454203139,0,0,0.220528398054962,0.8244312647074,0,0.0603129249281559,0.238744688006273,0.164140899745061,0,9.27126510052548,0.512612642393558,0,0,0.188368457004691,0,0,0,0,0.138199973804424,0.954670618015114,1.89801596148681,0.406638934253697,0.108005340821801,0.209088296014469,0,0.269728692769641,0.0826534557253359,0,0,0,1.69107881605257,0,0,0.194451188344048,0.129159823477731,0.337912250981556,0.469428954583016,0.13020438484395,0.209718688851422,0.483168241652012,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,4.30787728868902,0,0.0897138566094757,0.335769232728157,0,0.563047426353546,0.73260649706906,0.428736758158132,0,3.95326289831947,5.52390283808612,4.58316410751517,5.15559547031063,8.90607275701835,5.2877572817279,4.72515750162264,1.80128481289688,7.25027854374727,3.10656187051092,1.3492355185943,3.99024873401031,3.24393850932855,1.94485373654635,2.93458427679175,3.12533964365024,1.33348036680969,2.47242068686673,2.24643446714271,2.77966932940177,2.5347929989024,1.88626341386076,2.62196220915671,2.30490548657529,1.83793500657962,4.28664322154766,2.0859178670074,0.964546102318525,0.824171801606613,2.06078488188156,3.08582327146874,1.4198064492747,1.43061713968393,2.61623549938191,1.31753132581463,2.36920902096694,2.0122077016005,2.36762740294059,2.8518863907631,3.36685362994643,1.89816028998679,1.18205378850676,2.45538625901814,1.85924209423159,2.70069255373598,3.99696924700713,2.33931608445408,2.36358159453128,0.956441660344217,0.220591419119515,3.01428186306548 | |||
|short_description=p1@Fgd3 | |||
}} |
Revision as of 02:06, 6 August 2015
Short description: | p1@Fgd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fgd3_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENSMUST00000110086, uc007qje.1_5end |
EntrezGene: | 30938 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.58e-21 | 43 |
ectodermal cell | 9.05e-21 | 44 |
neurectodermal cell | 9.05e-21 | 44 |
embryonic cell | 3.03e-15 | 70 |
electrically responsive cell | 3.20e-15 | 39 |
electrically active cell | 3.20e-15 | 39 |
neuron | 3.90e-15 | 33 |
neuronal stem cell | 3.90e-15 | 33 |
neuroblast | 3.90e-15 | 33 |
electrically signaling cell | 3.90e-15 | 33 |
CNS neuron (sensu Vertebrata) | 5.97e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.97e-15 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.85e-37 | 75 |
central nervous system | 1.75e-35 | 73 |
ectoderm-derived structure | 2.43e-33 | 95 |
ectoderm | 2.43e-33 | 95 |
presumptive ectoderm | 2.43e-33 | 95 |
neurectoderm | 1.26e-28 | 64 |
neural plate | 1.26e-28 | 64 |
presumptive neural plate | 1.26e-28 | 64 |
regional part of nervous system | 8.45e-28 | 54 |
neural tube | 2.20e-26 | 52 |
neural rod | 2.20e-26 | 52 |
future spinal cord | 2.20e-26 | 52 |
neural keel | 2.20e-26 | 52 |
brain | 1.45e-23 | 47 |
future brain | 1.45e-23 | 47 |
regional part of brain | 1.02e-22 | 46 |
ecto-epithelium | 1.45e-22 | 73 |
pre-chordal neural plate | 3.88e-22 | 49 |
anterior neural tube | 3.45e-20 | 40 |
gray matter | 6.17e-20 | 34 |
structure with developmental contribution from neural crest | 1.26e-19 | 92 |
regional part of forebrain | 1.35e-19 | 39 |
forebrain | 1.35e-19 | 39 |
future forebrain | 1.35e-19 | 39 |
brain grey matter | 3.02e-17 | 29 |
regional part of telencephalon | 3.02e-17 | 29 |
telencephalon | 3.02e-17 | 29 |
cerebral cortex | 4.01e-12 | 21 |
cerebral hemisphere | 4.01e-12 | 21 |
pallium | 4.01e-12 | 21 |
regional part of cerebral cortex | 3.39e-10 | 17 |