FFCP PHASE1:Mm9::chr6:55629311..55629338,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=924 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:55629311..55629338,- | |||
|description=CAGE_peak_at_chr6:55629311..55629338,- | |description=CAGE_peak_at_chr6:55629311..55629338,- | ||
|id=chr6:55629311..55629338,- | |id=chr6:55629311..55629338,- | ||
|ontology_enrichment_celltype=CL:0000117!2.59e-21!23;CL:0000337!2.59e-21!23;CL:0002609!6.79e-15!6;CL:0000540!1.22e-13!33;CL:0000047!1.22e-13!33;CL:0000031!1.22e-13!33;CL:0000404!1.22e-13!33;CL:0000393!6.07e-11!39;CL:0000211!6.07e-11!39;CL:0002319!1.43e-09!43;CL:0000221!2.88e-09!44;CL:0000133!2.88e-09!44;CL:0002608!4.06e-08!3;CL:0000055!1.04e-07!50;CL:0002614!4.34e-07!3 | |ontology_enrichment_celltype=CL:0000117!2.59e-21!23;CL:0000337!2.59e-21!23;CL:0002609!6.79e-15!6;CL:0000540!1.22e-13!33;CL:0000047!1.22e-13!33;CL:0000031!1.22e-13!33;CL:0000404!1.22e-13!33;CL:0000393!6.07e-11!39;CL:0000211!6.07e-11!39;CL:0002319!1.43e-09!43;CL:0000221!2.88e-09!44;CL:0000133!2.88e-09!44;CL:0002608!4.06e-08!3;CL:0000055!1.04e-07!50;CL:0002614!4.34e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002609,1.99e-52,6;CL:0002608,1.59e-17,3;CL:0000117,4.90e-14,23;CL:0000337,4.90e-14,23;CL:0000540,7.02e-10,33;CL:0000047,7.02e-10,33;CL:0000031,7.02e-10,33;CL:0000404,7.02e-10,33;CL:0000393,2.12e-08,39;CL:0000211,2.12e-08,39;CL:0002319,1.22e-07,43;CL:0000221,1.80e-07,44;CL:0000133,1.80e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.07e-36!34;UBERON:0002791!1.47e-33!29;UBERON:0003528!1.47e-33!29;UBERON:0001893!1.47e-33!29;UBERON:0002780!1.14e-25!39;UBERON:0001890!1.14e-25!39;UBERON:0006240!1.14e-25!39;UBERON:0000956!1.83e-25!21;UBERON:0001869!1.83e-25!21;UBERON:0000203!1.83e-25!21;UBERON:0001049!2.25e-25!52;UBERON:0005068!2.25e-25!52;UBERON:0006241!2.25e-25!52;UBERON:0007135!2.25e-25!52;UBERON:0003080!7.06e-25!40;UBERON:0002616!5.75e-23!49;UBERON:0000955!2.22e-22!50;UBERON:0006238!2.22e-22!50;UBERON:0003056!3.22e-19!49;UBERON:0001017!4.19e-19!73;UBERON:0005743!4.19e-19!73;UBERON:0000073!2.10e-18!75;UBERON:0001016!2.10e-18!75;UBERON:0002619!1.28e-17!17;UBERON:0002346!8.89e-17!71;UBERON:0003075!8.89e-17!71;UBERON:0007284!8.89e-17!71;UBERON:0000033!1.86e-16!63;UBERON:0004121!1.15e-11!102;UBERON:0000924!1.15e-11!102;UBERON:0006601!1.15e-11!102;UBERON:0007811!2.10e-10!86;UBERON:0002021!2.27e-10!10;UBERON:0000411!2.27e-10!10;UBERON:0001950!2.27e-10!10;UBERON:0002420!4.89e-09!8;UBERON:0007245!4.89e-09!8;UBERON:0010009!4.89e-09!8;UBERON:0010011!4.89e-09!8;UBERON:0000454!4.89e-09!8;UBERON:0000153!5.26e-09!94;UBERON:0001954!1.12e-08!7;UBERON:0003022!1.12e-08!7;UBERON:0002421!1.12e-08!7;UBERON:0000349!1.12e-08!7;UBERON:0002600!1.12e-08!7;UBERON:0000025!5.57e-08!114;UBERON:0002038!4.34e-07!3;UBERON:0002308!4.34e-07!3;UBERON:0009663!4.34e-07!3;UBERON:0009661!4.34e-07!3;UBERON:0006331!4.34e-07!3;UBERON:0000125!4.34e-07!3;UBERON:0004111!4.81e-07!122 | |ontology_enrichment_uberon=UBERON:0002020!3.07e-36!34;UBERON:0002791!1.47e-33!29;UBERON:0003528!1.47e-33!29;UBERON:0001893!1.47e-33!29;UBERON:0002780!1.14e-25!39;UBERON:0001890!1.14e-25!39;UBERON:0006240!1.14e-25!39;UBERON:0000956!1.83e-25!21;UBERON:0001869!1.83e-25!21;UBERON:0000203!1.83e-25!21;UBERON:0001049!2.25e-25!52;UBERON:0005068!2.25e-25!52;UBERON:0006241!2.25e-25!52;UBERON:0007135!2.25e-25!52;UBERON:0003080!7.06e-25!40;UBERON:0002616!5.75e-23!49;UBERON:0000955!2.22e-22!50;UBERON:0006238!2.22e-22!50;UBERON:0003056!3.22e-19!49;UBERON:0001017!4.19e-19!73;UBERON:0005743!4.19e-19!73;UBERON:0000073!2.10e-18!75;UBERON:0001016!2.10e-18!75;UBERON:0002619!1.28e-17!17;UBERON:0002346!8.89e-17!71;UBERON:0003075!8.89e-17!71;UBERON:0007284!8.89e-17!71;UBERON:0000033!1.86e-16!63;UBERON:0004121!1.15e-11!102;UBERON:0000924!1.15e-11!102;UBERON:0006601!1.15e-11!102;UBERON:0007811!2.10e-10!86;UBERON:0002021!2.27e-10!10;UBERON:0000411!2.27e-10!10;UBERON:0001950!2.27e-10!10;UBERON:0002420!4.89e-09!8;UBERON:0007245!4.89e-09!8;UBERON:0010009!4.89e-09!8;UBERON:0010011!4.89e-09!8;UBERON:0000454!4.89e-09!8;UBERON:0000153!5.26e-09!94;UBERON:0001954!1.12e-08!7;UBERON:0003022!1.12e-08!7;UBERON:0002421!1.12e-08!7;UBERON:0000349!1.12e-08!7;UBERON:0002600!1.12e-08!7;UBERON:0000025!5.57e-08!114;UBERON:0002038!4.34e-07!3;UBERON:0002308!4.34e-07!3;UBERON:0009663!4.34e-07!3;UBERON:0009661!4.34e-07!3;UBERON:0006331!4.34e-07!3;UBERON:0000125!4.34e-07!3;UBERON:0004111!4.81e-07!122 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,3.30e-29,21;UBERON:0001869,3.30e-29,21;UBERON:0000203,3.30e-29,21;UBERON:0003528,2.99e-21,29;UBERON:0002791,2.99e-21,29;UBERON:0001893,2.99e-21,29;UBERON:0002020,3.59e-18,34;UBERON:0001954,1.38e-16,7;UBERON:0003022,1.38e-16,7;UBERON:0002421,1.38e-16,7;UBERON:0000349,1.38e-16,7;UBERON:0002600,1.38e-16,7;UBERON:0002780,7.07e-16,39;UBERON:0001890,7.07e-16,39;UBERON:0006240,7.07e-16,39;UBERON:0003080,1.74e-15,40;UBERON:0002616,1.70e-13,46;UBERON:0000955,3.25e-13,47;UBERON:0006238,3.25e-13,47;UBERON:0003056,1.11e-12,49;UBERON:0002619,4.53e-12,17;UBERON:0001049,5.81e-12,52;UBERON:0005068,5.81e-12,52;UBERON:0006241,5.81e-12,52;UBERON:0007135,5.81e-12,52;UBERON:0000073,1.59e-11,54;UBERON:0002346,9.52e-10,64;UBERON:0003075,9.52e-10,64;UBERON:0007284,9.52e-10,64;UBERON:0010371,1.47e-08,73;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0010314,8.41e-07,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,6.0139975138917,17.5507719831198,4.41682418837902,0.285650984403804,0,1.83736198822431,2.01275489138296,0.919218786610021,0,0.127687338085188,0,0,0.0914876436024097,0.52091337055676,0.279182999001381,0.56276261003168,0.45839474333043,0,0.427115042397309,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,0.502617408451458,0.173824320192276,0,0,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,1.74937841044784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.343706364687375,1.37016503954128,0,0.675022500231806,0.45032120322422,0,0.51776031175182,0,0,0.341467211508268,0,0,0.183843508450014,0,0.412070114477788,0,0.252697211763798,0,0.188626341386076,0,0,0.287177344778066,0,0,0,0,0.147198920134397,0,0,0,0.290692833264657,0.188218760830661,0.169229215783353,0,0,0,0,0,0.0985044823755635,0.818462086339379,0.154936841185966,0,0.999242311751784,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,0,0,6.0139975138917,17.5507719831198,4.41682418837902,0.285650984403804,0,1.83736198822431,2.01275489138296,0.919218786610021,0,0.127687338085188,0,0,0.0914876436024097,0.52091337055676,0.279182999001381,0.56276261003168,0.45839474333043,0,0.427115042397309,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,0.502617408451458,0.173824320192276,0,0,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,1.74937841044784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.343706364687375,1.37016503954128,0,0.675022500231806,0.45032120322422,0,0.51776031175182,0,0,0.341467211508268,0,0,0.183843508450014,0,0.412070114477788,0,0.252697211763798,0,0.188626341386076,0,0,0.287177344778066,0,0,0,0,0.147198920134397,0,0,0,0.290692833264657,0.188218760830661,0.169229215783353,0,0,0,0,0,0.0985044823755635,0.818462086339379,0.154936841185966,0,0.999242311751784,0,0,0,0,0 | ||
|short_description=p@chr6:55629311..55629338,- | |short_description=p@chr6:55629311..55629338,- | ||
}} | }} |
Latest revision as of 23:46, 5 August 2015
Short description: | p@chr6:55629311..55629338, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:55629311..55629338, - |
Coexpression cluster: | MCL_coexpression_mm9:924 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.99e-52 | 6 |
hippocampal neuron | 1.59e-17 | 3 |
CNS neuron (sensu Vertebrata) | 4.90e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.90e-14 | 23 |
neuron | 7.02e-10 | 33 |
neuronal stem cell | 7.02e-10 | 33 |
neuroblast | 7.02e-10 | 33 |
electrically signaling cell | 7.02e-10 | 33 |
electrically responsive cell | 2.12e-08 | 39 |
electrically active cell | 2.12e-08 | 39 |
neural cell | 1.22e-07 | 43 |
ectodermal cell | 1.80e-07 | 44 |
neurectodermal cell | 1.80e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 3.30e-29 | 21 |
cerebral hemisphere | 3.30e-29 | 21 |
pallium | 3.30e-29 | 21 |
brain grey matter | 2.99e-21 | 29 |
regional part of telencephalon | 2.99e-21 | 29 |
telencephalon | 2.99e-21 | 29 |
gray matter | 3.59e-18 | 34 |
Ammon's horn | 1.38e-16 | 7 |
lobe parts of cerebral cortex | 1.38e-16 | 7 |
hippocampal formation | 1.38e-16 | 7 |
limbic system | 1.38e-16 | 7 |
limbic lobe | 1.38e-16 | 7 |
regional part of forebrain | 7.07e-16 | 39 |
forebrain | 7.07e-16 | 39 |
future forebrain | 7.07e-16 | 39 |
anterior neural tube | 1.74e-15 | 40 |
regional part of brain | 1.70e-13 | 46 |
brain | 3.25e-13 | 47 |
future brain | 3.25e-13 | 47 |
pre-chordal neural plate | 1.11e-12 | 49 |
regional part of cerebral cortex | 4.53e-12 | 17 |
neural tube | 5.81e-12 | 52 |
neural rod | 5.81e-12 | 52 |
future spinal cord | 5.81e-12 | 52 |
neural keel | 5.81e-12 | 52 |
regional part of nervous system | 1.59e-11 | 54 |
neurectoderm | 9.52e-10 | 64 |
neural plate | 9.52e-10 | 64 |
presumptive neural plate | 9.52e-10 | 64 |
ecto-epithelium | 1.47e-08 | 73 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
structure with developmental contribution from neural crest | 8.41e-07 | 92 |