FFCP PHASE1:Mm9::chr15:98783972..98783991,-: Difference between revisions
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{{FFCP|EntrezGene=22142|HGNC=|MCL_coexpression_id=22|UniProt=P68369|association_with_transcript=0bp_to_ENSMUST00000097014,ENSMUST00000134214,ENSMUST00000136329_5end|description=CAGE_peak_1_at_Tuba1a_5end|id=chr15:98783972..98783991,-|ontology_enrichment_celltype=CL:0000221!3.27e-18!44;CL:0000133!3.27e-18!44;CL:0000055!5.01e-18!50;CL:0002319!5.03e-18!43;CL:0000393!2.53e-14!39;CL:0000211!2.53e-14!39;CL:0000540!8.90e-14!33;CL:0000047!8.90e-14!33;CL:0000031!8.90e-14!33;CL:0000404!8.90e-14!33;CL:0000117!5.47e-11!23;CL:0000337!5.47e-11!23|ontology_enrichment_celltype_v019_2=CL:0000221,3.25e-18,44;CL:0000133,3.25e-18,44;CL:0002319,5.00e-18,43;CL:0000393,2.52e-14,39;CL:0000211,2.52e-14,39;CL:0000540,8.86e-14,33;CL:0000047,8.86e-14,33;CL:0000031,8.86e-14,33;CL:0000404,8.86e-14,33;CL:0000117,5.45e-11,23;CL:0000337,5.45e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.27e-27!75;UBERON:0001016!8.27e-27!75;UBERON:0001017!1.59e-25!73;UBERON:0005743!1.59e-25!73;UBERON:0004121!1.96e-25!102;UBERON:0000924!1.96e-25!102;UBERON:0006601!1.96e-25!102;UBERON:0002346!1.95e-21!71;UBERON:0003075!1.95e-21!71;UBERON:0007284!1.95e-21!71;UBERON:0001049!2.71e-18!52;UBERON:0005068!2.71e-18!52;UBERON:0006241!2.71e-18!52;UBERON:0007135!2.71e-18!52;UBERON:0000033!9.99e-17!63;UBERON:0003056!1.71e-16!49;UBERON:0002020!2.36e-15!34;UBERON:0000955!9.78e-15!50;UBERON:0006238!9.78e-15!50;UBERON:0002616!1.90e-14!49;UBERON:0003080!1.43e-13!40;UBERON:0002780!1.64e-13!39;UBERON:0001890!1.64e-13!39;UBERON:0006240!1.64e-13!39;UBERON:0002791!2.30e-12!29;UBERON:0003528!2.30e-12!29;UBERON:0001893!2.30e-12!29;UBERON:0000956!1.45e-09!21;UBERON:0001869!1.45e-09!21;UBERON:0000203!1.45e-09!21;UBERON:0000153!1.99e-08!94;UBERON:0007811!2.25e-08!86;UBERON:0002619!1.67e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.19e-27,75;UBERON:0004121,2.10e-26,95;UBERON:0000924,2.10e-26,95;UBERON:0006601,2.10e-26,95;UBERON:0001017,1.57e-25,73;UBERON:0002346,6.22e-23,64;UBERON:0003075,6.22e-23,64;UBERON:0007284,6.22e-23,64;UBERON:0010371,1.94e-20,73;UBERON:0010314,6.31e-19,92;UBERON:0001049,2.69e-18,52;UBERON:0005068,2.69e-18,52;UBERON:0006241,2.69e-18,52;UBERON:0007135,2.69e-18,52;UBERON:0000073,2.11e-17,54;UBERON:0003056,1.70e-16,49;UBERON:0002020,2.35e-15,34;UBERON:0000955,3.02e-15,47;UBERON:0006238,3.02e-15,47;UBERON:0002616,5.83e-15,46;UBERON:0003080,1.43e-13,40;UBERON:0002780,1.63e-13,39;UBERON:0001890,1.63e-13,39;UBERON:0006240,1.63e-13,39;UBERON:0003528,2.29e-12,29;UBERON:0002791,2.29e-12,29;UBERON:0001893,2.29e-12,29;UBERON:0000956,1.44e-09,21;UBERON:0001869,1.44e-09,21;UBERON:0000203,1.44e-09,21;UBERON:0002619,1.67e-07,17|phase1_expression=38.5958721522553,0.697950815278722,0,0,0,3.18970616632591,4.43864017131499,14.2035655785734,50.5431512524484,54.0689055803805,3.08192342805909,1.59544317990673,15.5792664237397,19.3199089345984,0.666219523631325,2.22722794128809,0,6.78243655520211,6.58149281307546,6.36584477697045,16.9236147400629,3.97163804803541,13.0599894569468,3.19984845586813,3.44113921600755,0.57423196411502,0.430761996159075,0.215471232685889,0.380046838912748,0.504060259519861,1.33038306393183,12.065582795733,3.69038872550742,0,0.288851619751275,0.332469290716985,0.408338712524738,8.78916424547506,6.2506827561904,5.75876118371178,13.5293242247133,7.5135003345429,8.25367600152961,49.8551399183286,44.7072266678059,78.7415566773614,107.970005520029,147.385005713182,99.9572131441847,82.6327071065705,67.7534280666755,143.752564364972,9.39582593923324,30.4652099644765,27.8957853288245,121.426453808967,57.5932214276901,75.803797564784,703.252017947962,725.246632581957,699.116038067316,127.744388590063,72.0328784850023,11.2487464660175,3.9554654502679,10.6572017241915,127.929247191359,398.05016431313,549.762324459548,344.805166499138,485.219685837638,338.782067502911,281.386521172356,484.941074092003,406.097260704267,395.264078242309,5.50579404996943,77.6339015557941,77.2640862278905,796.988836753561,616.352254949434,699.065743287172,75.6585927293742,46.7092966326294,81.1358695694862,196.81189509641,308.092317249259,413.620370286342,172.201363639661,306.820534033549,16.232411367294,13.7667820317022,0.679971333707751,0,0,0,11.9377757111989,50.6178058056832,93.7827476616356,94.3416663942608,81.2666532111447,41.0644727725817,12.7402619853323,14.2213340630666,28.360326372469,29.1363845296363,25.7817466957539,3.53970027129086,12.9468941823586,6.82833839698194,56.9031871792926,72.7672493166017,42.6638669923708,53.0543694745231,45.9771844900606,8.04266184509923,14.8316980640624,10.4111536982336,11.4999371753484,32.6769036893767,9.71702681225732,13.5765070877862,44.7340226923493,45.0882427397783,50.8955497556696,2.81002760729451,5.39168060276641,8.39863823390771,6.09937089950711,62.0133247135966,68.625090422794,671.371203339035,92.3007140220988,97.1718737855256,89.3488591606108,80.4716664816078,47.7626616457983,8.9573018839267,3.53811861807145,18.3084414621232,89.0023829864893,219.556509733967,254.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22142 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P68369 | |||
|association_with_transcript=0bp_to_ENSMUST00000097014,ENSMUST00000134214,ENSMUST00000136329_5end | |||
|cluster_id=chr15:98783972..98783991,- | |||
|description=CAGE_peak_1_at_Tuba1a_5end | |||
|id=chr15:98783972..98783991,- | |||
|ontology_enrichment_celltype=CL:0000221!3.27e-18!44;CL:0000133!3.27e-18!44;CL:0000055!5.01e-18!50;CL:0002319!5.03e-18!43;CL:0000393!2.53e-14!39;CL:0000211!2.53e-14!39;CL:0000540!8.90e-14!33;CL:0000047!8.90e-14!33;CL:0000031!8.90e-14!33;CL:0000404!8.90e-14!33;CL:0000117!5.47e-11!23;CL:0000337!5.47e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.25e-18,44;CL:0000133,3.25e-18,44;CL:0002319,5.00e-18,43;CL:0000393,2.52e-14,39;CL:0000211,2.52e-14,39;CL:0000540,8.86e-14,33;CL:0000047,8.86e-14,33;CL:0000031,8.86e-14,33;CL:0000404,8.86e-14,33;CL:0000117,5.45e-11,23;CL:0000337,5.45e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.27e-27!75;UBERON:0001016!8.27e-27!75;UBERON:0001017!1.59e-25!73;UBERON:0005743!1.59e-25!73;UBERON:0004121!1.96e-25!102;UBERON:0000924!1.96e-25!102;UBERON:0006601!1.96e-25!102;UBERON:0002346!1.95e-21!71;UBERON:0003075!1.95e-21!71;UBERON:0007284!1.95e-21!71;UBERON:0001049!2.71e-18!52;UBERON:0005068!2.71e-18!52;UBERON:0006241!2.71e-18!52;UBERON:0007135!2.71e-18!52;UBERON:0000033!9.99e-17!63;UBERON:0003056!1.71e-16!49;UBERON:0002020!2.36e-15!34;UBERON:0000955!9.78e-15!50;UBERON:0006238!9.78e-15!50;UBERON:0002616!1.90e-14!49;UBERON:0003080!1.43e-13!40;UBERON:0002780!1.64e-13!39;UBERON:0001890!1.64e-13!39;UBERON:0006240!1.64e-13!39;UBERON:0002791!2.30e-12!29;UBERON:0003528!2.30e-12!29;UBERON:0001893!2.30e-12!29;UBERON:0000956!1.45e-09!21;UBERON:0001869!1.45e-09!21;UBERON:0000203!1.45e-09!21;UBERON:0000153!1.99e-08!94;UBERON:0007811!2.25e-08!86;UBERON:0002619!1.67e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.19e-27,75;UBERON:0004121,2.10e-26,95;UBERON:0000924,2.10e-26,95;UBERON:0006601,2.10e-26,95;UBERON:0001017,1.57e-25,73;UBERON:0002346,6.22e-23,64;UBERON:0003075,6.22e-23,64;UBERON:0007284,6.22e-23,64;UBERON:0010371,1.94e-20,73;UBERON:0010314,6.31e-19,92;UBERON:0001049,2.69e-18,52;UBERON:0005068,2.69e-18,52;UBERON:0006241,2.69e-18,52;UBERON:0007135,2.69e-18,52;UBERON:0000073,2.11e-17,54;UBERON:0003056,1.70e-16,49;UBERON:0002020,2.35e-15,34;UBERON:0000955,3.02e-15,47;UBERON:0006238,3.02e-15,47;UBERON:0002616,5.83e-15,46;UBERON:0003080,1.43e-13,40;UBERON:0002780,1.63e-13,39;UBERON:0001890,1.63e-13,39;UBERON:0006240,1.63e-13,39;UBERON:0003528,2.29e-12,29;UBERON:0002791,2.29e-12,29;UBERON:0001893,2.29e-12,29;UBERON:0000956,1.44e-09,21;UBERON:0001869,1.44e-09,21;UBERON:0000203,1.44e-09,21;UBERON:0002619,1.67e-07,17 | |||
|phase1_expression=38.5958721522553,0.697950815278722,0,0,0,3.18970616632591,4.43864017131499,14.2035655785734,50.5431512524484,54.0689055803805,3.08192342805909,1.59544317990673,15.5792664237397,19.3199089345984,0.666219523631325,2.22722794128809,0,6.78243655520211,6.58149281307546,6.36584477697045,16.9236147400629,3.97163804803541,13.0599894569468,3.19984845586813,3.44113921600755,0.57423196411502,0.430761996159075,0.215471232685889,0.380046838912748,0.504060259519861,1.33038306393183,12.065582795733,3.69038872550742,0,0.288851619751275,0.332469290716985,0.408338712524738,8.78916424547506,6.2506827561904,5.75876118371178,13.5293242247133,7.5135003345429,8.25367600152961,49.8551399183286,44.7072266678059,78.7415566773614,107.970005520029,147.385005713182,99.9572131441847,82.6327071065705,67.7534280666755,143.752564364972,9.39582593923324,30.4652099644765,27.8957853288245,121.426453808967,57.5932214276901,75.803797564784,703.252017947962,725.246632581957,699.116038067316,127.744388590063,72.0328784850023,11.2487464660175,3.9554654502679,10.6572017241915,127.929247191359,398.05016431313,549.762324459548,344.805166499138,485.219685837638,338.782067502911,281.386521172356,484.941074092003,406.097260704267,395.264078242309,5.50579404996943,77.6339015557941,77.2640862278905,796.988836753561,616.352254949434,699.065743287172,75.6585927293742,46.7092966326294,81.1358695694862,196.81189509641,308.092317249259,413.620370286342,172.201363639661,306.820534033549,16.232411367294,13.7667820317022,0.679971333707751,0,0,0,11.9377757111989,50.6178058056832,93.7827476616356,94.3416663942608,81.2666532111447,41.0644727725817,12.7402619853323,14.2213340630666,28.360326372469,29.1363845296363,25.7817466957539,3.53970027129086,12.9468941823586,6.82833839698194,56.9031871792926,72.7672493166017,42.6638669923708,53.0543694745231,45.9771844900606,8.04266184509923,14.8316980640624,10.4111536982336,11.4999371753484,32.6769036893767,9.71702681225732,13.5765070877862,44.7340226923493,45.0882427397783,50.8955497556696,2.81002760729451,5.39168060276641,8.39863823390771,6.09937089950711,62.0133247135966,68.625090422794,671.371203339035,92.3007140220988,97.1718737855256,89.3488591606108,80.4716664816078,47.7626616457983,8.9573018839267,3.53811861807145,18.3084414621232,89.0023829864893,219.556509733967,254.427789414958,155.979486459965,103.143332713413,147.202664607292,148.798338600849,62.3475123481028,58.2033580918674,50.1131112444721,44.3396832893151,57.8676733608798,36.9802841470045,45.6210338144038,25.1054206417691,21.4957008163973,3.51106593656617,6.43369767786788,2.84163499395593,62.1377317606506,63.0875101349149,45.3756394881757,54.9247786557688,35.6143259462801,30.3906212388135,26.2763357567961,33.802448576352,17.8650973821769,25.1776570367625,21.9984401865988,11.2685645268739,15.7895986419359,17.124908992702,7.78397228810156,86.4291688598563,780.428580284493,0.660837565967596,4.23120906661671,46.0702621156105,32.7453707323218,42.0107923910024,30.4542122181247,20.4587800337281,31.1970026824597,8.54152310780121,27.5047254389098,21.3634927480229,23.4768637008558,13.062593836981,8.08937467788799,12.9682829924817,3.78368419183298,71.884134461218,37.0165180855521,27.0498565615393,23.6235540300565,14.1585315632367,13.7466206985024,14.6708766128277,6.9376769550413,8.32093257559286,3.20832626196681,0,14.0149888801519,12.579775687245,7.87017393346988,5.68008339887808,4.10001171579109,3.56476192493988,4.02774592431135,2.59416362840057,7.13859674289012,2.87536413054709,5.20997326735905,5.61667811606209,3.28352541331245,1.79397413521912,0.964887042726734,32.701314659489,47.5623443543917,57.2007067311511,34.9674876696888,22.2955735874077,26.9685074481323,35.4685024920161,38.6364622758442,45.0836512143706,67.1038009635788,65.8548194555422,41.6212819377975,53.8777143421594,30.9548985364435,3.01582567878545,10.3342079925555,7.37646409528554,8.00216564283724,84.6101609235664,100.56762709611,37.2132326005053,9.59389523376617,115.47600830635,136.653560503823,130.977425821542,74.5582649611962,87.7826775884633,89.452183729271,116.58548208237,121.286181033194,104.355973377882,92.2192178130586,25.1233950818635,30.9834150381024,27.3650091714008,29.3646818891113,3.98235415019888,30.1047988832177,19.6510312027088,13.3909606626688,32.7785101097658,25.8245524272899,21.7079766261306,19.9943551212628,24.9548164869305,9.7971394960103,9.48767477174989,8.25084345985495,49.0233032285455,82.8281032544027,76.1922647480424,62.1577401591618,56.7488747655275,52.2620635574067,77.1734906623947,94.3841342255258,30.2726503402186,22.6660315824288,12.5701186891328,18.1374878235628,27.1260236849121,53.7388161109869,35.3342138249284,31.0226300518166,6.99554007911642,95.679455837423,3.75915937755276,15.8917888331681,5.18544676635193,4.70921142511728,1.91371918809435,5.0331198105435,9.5187920796559,11.056164733569,11.6087977995716,7.63736494412091,56.6241428510232,48.39003317619,32.2935969057186,31.3632444021703,22.4913440658563,34.1206796353596,20.2500966527073,17.0141362289619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| |||
|short_description=p1@Tuba1a | |||
}} |
Revision as of 23:44, 5 August 2015
Short description: | p1@Tuba1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tuba1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000097014, ENSMUST00000134214, ENSMUST00000136329_5end |
EntrezGene: | 22142 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.25e-18 | 44 |
neurectodermal cell | 3.25e-18 | 44 |
neural cell | 5.00e-18 | 43 |
electrically responsive cell | 2.52e-14 | 39 |
electrically active cell | 2.52e-14 | 39 |
neuron | 8.86e-14 | 33 |
neuronal stem cell | 8.86e-14 | 33 |
neuroblast | 8.86e-14 | 33 |
electrically signaling cell | 8.86e-14 | 33 |
CNS neuron (sensu Vertebrata) | 5.45e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.45e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.19e-27 | 75 |
ectoderm-derived structure | 2.10e-26 | 95 |
ectoderm | 2.10e-26 | 95 |
presumptive ectoderm | 2.10e-26 | 95 |
central nervous system | 1.57e-25 | 73 |
neurectoderm | 6.22e-23 | 64 |
neural plate | 6.22e-23 | 64 |
presumptive neural plate | 6.22e-23 | 64 |
ecto-epithelium | 1.94e-20 | 73 |
structure with developmental contribution from neural crest | 6.31e-19 | 92 |
neural tube | 2.69e-18 | 52 |
neural rod | 2.69e-18 | 52 |
future spinal cord | 2.69e-18 | 52 |
neural keel | 2.69e-18 | 52 |
regional part of nervous system | 2.11e-17 | 54 |
pre-chordal neural plate | 1.70e-16 | 49 |
gray matter | 2.35e-15 | 34 |
brain | 3.02e-15 | 47 |
future brain | 3.02e-15 | 47 |
regional part of brain | 5.83e-15 | 46 |
anterior neural tube | 1.43e-13 | 40 |
regional part of forebrain | 1.63e-13 | 39 |
forebrain | 1.63e-13 | 39 |
future forebrain | 1.63e-13 | 39 |
brain grey matter | 2.29e-12 | 29 |
regional part of telencephalon | 2.29e-12 | 29 |
telencephalon | 2.29e-12 | 29 |
cerebral cortex | 1.44e-09 | 21 |
cerebral hemisphere | 1.44e-09 | 21 |
pallium | 1.44e-09 | 21 |
regional part of cerebral cortex | 1.67e-07 | 17 |