FFCP PHASE1:Mm9::chr3:116210953..116210988,-: Difference between revisions
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{{FFCP|EntrezGene=66368|HGNC=|MCL_coexpression_id=60|UniProt=D3Z263|association_with_transcript=0bp_to_ENSMUST00000153005_5end|description=CAGE_peak_2_at_Rtcd1_5end|id=chr3:116210953..116210988,-|ontology_enrichment_celltype=CL:0000540!2.14e-15!33;CL:0000047!2.14e-15!33;CL:0000031!2.14e-15!33;CL:0000404!2.14e-15!33;CL:0000221!2.50e-15!44;CL:0000133!2.50e-15!44;CL:0002319!4.13e-15!43;CL:0000393!7.22e-15!39;CL:0000211!7.22e-15!39;CL:0000055!8.01e-15!50;CL:0000117!4.42e-12!23;CL:0000337!4.42e-12!23;CL:0000034!5.11e-08!97;CL:0000548!6.97e-08!115;CL:0000004!6.97e-08!115;CL:0000255!6.97e-08!115;CL:0000144!8.35e-08!121;CL:0000012!8.35e-08!121;CL:0002321!1.58e-07!70;CL:0000220!1.58e-07!70;CL:0002371!1.75e-07!118;CL:0000723!9.21e-07!91;CL:0000048!9.21e-07!91|ontology_enrichment_celltype_v019_2=CL:0000540,2.14e-15,33;CL:0000047,2.14e-15,33;CL:0000031,2.14e-15,33;CL:0000404,2.14e-15,33;CL:0000221,2.50e-15,44;CL:0000133,2.50e-15,44;CL:0002319,4.13e-15,43;CL:0000393,7.22e-15,39;CL:0000211,7.22e-15,39;CL:0000117,4.42e-12,23;CL:0000337,4.42e-12,23;CL:0000034,5.09e-08,97;CL:0002321,1.57e-07,70;CL:0000723,9.19e-07,91;CL:0000048,9.19e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.81e-23!75;UBERON:0001016!1.81e-23!75;UBERON:0001017!1.96e-22!73;UBERON:0005743!1.96e-22!73;UBERON:0001049!2.01e-17!52;UBERON:0005068!2.01e-17!52;UBERON:0006241!2.01e-17!52;UBERON:0007135!2.01e-17!52;UBERON:0002020!2.55e-15!34;UBERON:0002346!2.75e-15!71;UBERON:0003075!2.75e-15!71;UBERON:0007284!2.75e-15!71;UBERON:0002616!4.46e-15!49;UBERON:0000955!3.33e-14!50;UBERON:0006238!3.33e-14!50;UBERON:0004121!4.43e-14!102;UBERON:0000924!4.43e-14!102;UBERON:0006601!4.43e-14!102;UBERON:0003080!2.22e-13!40;UBERON:0002780!3.36e-13!39;UBERON:0001890!3.36e-13!39;UBERON:0006240!3.36e-13!39;UBERON:0002791!2.92e-12!29;UBERON:0003528!2.92e-12!29;UBERON:0001893!2.92e-12!29;UBERON:0000033!1.05e-11!63;UBERON:0003056!1.12e-11!49;UBERON:0000956!1.58e-08!21;UBERON:0001869!1.58e-08!21;UBERON:0000203!1.58e-08!21;UBERON:0002619!1.69e-07!17;UBERON:0007811!8.32e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.81e-23,75;UBERON:0001017,1.96e-22,73;UBERON:0000073,3.88e-18,54;UBERON:0001049,2.01e-17,52;UBERON:0005068,2.01e-17,52;UBERON:0006241,2.01e-17,52;UBERON:0007135,2.01e-17,52;UBERON:0002346,2.50e-17,64;UBERON:0003075,2.50e-17,64;UBERON:0007284,2.50e-17,64;UBERON:0004121,2.16e-15,95;UBERON:0000924,2.16e-15,95;UBERON:0006601,2.16e-15,95;UBERON:0002020,2.55e-15,34;UBERON:0002616,9.38e-14,46;UBERON:0003080,2.22e-13,40;UBERON:0002780,3.36e-13,39;UBERON:0001890,3.36e-13,39;UBERON:0006240,3.36e-13,39;UBERON:0010371,3.50e-13,73;UBERON:0000955,6.64e-13,47;UBERON:0006238,6.64e-13,47;UBERON:0010314,2.32e-12,92;UBERON:0003528,2.92e-12,29;UBERON:0002791,2.92e-12,29;UBERON:0001893,2.92e-12,29;UBERON:0003056,1.12e-11,49;UBERON:0000956,1.58e-08,21;UBERON:0001869,1.58e-08,21;UBERON:0000203,1.58e-08,21;UBERON:0002619,1.69e-07,17|phase1_expression=9.28863313207805,10.4692622291808,8.18998630901165,6.65421264875026,6.01074875935617,4.53274034162102,7.94282978024787,5.16493293766305,11.403886494285,14.0438715793196,3.4243593645101,5.90313976565489,4.45121897821135,6.03200776691082,7.66152452176024,6.07425802169478,4.89693314689703,5.52058789376916,4.79900517620086,8.06340338416257,13.2667532635669,11.5177503393027,9.66439219814061,7.03966660290989,6.65286915094793,5.16808767703518,7.32295393470427,7.75696437669201,10.2612646506442,5.79669298447841,8.86922042621219,10.7955214488137,11.6862309641068,31.6963362030877,2.59966457776147,6.31691652362271,5.51257261908397,3.76678467663217,7.0320181007142,5.75876118371178,5.29408339227913,0.683045484958446,4.36959317728038,5.41356317294982,6.18399280439039,7.34187008646726,7.82391344348039,6.75877984779384,9.22681967484782,11.0825042472342,7.69925318939494,5.75010257459886,5.03347818173209,2.17608642603403,7.73015738027667,11.5766746216176,9.45560351797897,7.21940929188419,12.3413041124355,15.340738398889,16.4796164911607,6.43804610931351,6.22506357277798,3.5995988691256,0,1.4209602298922,5.99200221036809,4.99483796918021,9.85051316930538,9.72042755988173,9.67494822216357,12.5686433137674,15.4607978666129,11.7591167246356,9.4887016308054,11.9498442259303,9.91042928994498,12.896421146604,11.981309593987,15.0350368012421,12.4423195299277,13.022834263919,15.355064945076,11.8180148106653,9.62628960993904,14.142172102736,14.5219114415085,16.5895506784518,11.4346551933108,12.1670211771925,4.05810284182349,6.88339101585109,4.0798280022465,4.31762553310254,3.24888208723835,2.68816132258401,6.17955448579708,5.62420064507591,7.53379413348319,5.3000936176551,9.15482228548423,3.84979432242953,0,0,7.57718643539249,3.54703811665138,4.54972000513305,4.68153906848146,3.10725460376606,3.85949561568544,6.24547176358089,8.22056791442781,7.37969591219387,5.12456977878917,5.64425794251383,4.90099706185734,3.95511948374998,2.89198713839823,2.65383165584962,8.25010934731787,7.72945314611377,3.3941267719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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66368 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z263 | |||
|association_with_transcript=0bp_to_ENSMUST00000153005_5end | |||
|cluster_id=chr3:116210953..116210988,- | |||
|description=CAGE_peak_2_at_Rtcd1_5end | |||
|id=chr3:116210953..116210988,- | |||
|ontology_enrichment_celltype=CL:0000540!2.14e-15!33;CL:0000047!2.14e-15!33;CL:0000031!2.14e-15!33;CL:0000404!2.14e-15!33;CL:0000221!2.50e-15!44;CL:0000133!2.50e-15!44;CL:0002319!4.13e-15!43;CL:0000393!7.22e-15!39;CL:0000211!7.22e-15!39;CL:0000055!8.01e-15!50;CL:0000117!4.42e-12!23;CL:0000337!4.42e-12!23;CL:0000034!5.11e-08!97;CL:0000548!6.97e-08!115;CL:0000004!6.97e-08!115;CL:0000255!6.97e-08!115;CL:0000144!8.35e-08!121;CL:0000012!8.35e-08!121;CL:0002321!1.58e-07!70;CL:0000220!1.58e-07!70;CL:0002371!1.75e-07!118;CL:0000723!9.21e-07!91;CL:0000048!9.21e-07!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.14e-15,33;CL:0000047,2.14e-15,33;CL:0000031,2.14e-15,33;CL:0000404,2.14e-15,33;CL:0000221,2.50e-15,44;CL:0000133,2.50e-15,44;CL:0002319,4.13e-15,43;CL:0000393,7.22e-15,39;CL:0000211,7.22e-15,39;CL:0000117,4.42e-12,23;CL:0000337,4.42e-12,23;CL:0000034,5.09e-08,97;CL:0002321,1.57e-07,70;CL:0000723,9.19e-07,91;CL:0000048,9.19e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.81e-23!75;UBERON:0001016!1.81e-23!75;UBERON:0001017!1.96e-22!73;UBERON:0005743!1.96e-22!73;UBERON:0001049!2.01e-17!52;UBERON:0005068!2.01e-17!52;UBERON:0006241!2.01e-17!52;UBERON:0007135!2.01e-17!52;UBERON:0002020!2.55e-15!34;UBERON:0002346!2.75e-15!71;UBERON:0003075!2.75e-15!71;UBERON:0007284!2.75e-15!71;UBERON:0002616!4.46e-15!49;UBERON:0000955!3.33e-14!50;UBERON:0006238!3.33e-14!50;UBERON:0004121!4.43e-14!102;UBERON:0000924!4.43e-14!102;UBERON:0006601!4.43e-14!102;UBERON:0003080!2.22e-13!40;UBERON:0002780!3.36e-13!39;UBERON:0001890!3.36e-13!39;UBERON:0006240!3.36e-13!39;UBERON:0002791!2.92e-12!29;UBERON:0003528!2.92e-12!29;UBERON:0001893!2.92e-12!29;UBERON:0000033!1.05e-11!63;UBERON:0003056!1.12e-11!49;UBERON:0000956!1.58e-08!21;UBERON:0001869!1.58e-08!21;UBERON:0000203!1.58e-08!21;UBERON:0002619!1.69e-07!17;UBERON:0007811!8.32e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.81e-23,75;UBERON:0001017,1.96e-22,73;UBERON:0000073,3.88e-18,54;UBERON:0001049,2.01e-17,52;UBERON:0005068,2.01e-17,52;UBERON:0006241,2.01e-17,52;UBERON:0007135,2.01e-17,52;UBERON:0002346,2.50e-17,64;UBERON:0003075,2.50e-17,64;UBERON:0007284,2.50e-17,64;UBERON:0004121,2.16e-15,95;UBERON:0000924,2.16e-15,95;UBERON:0006601,2.16e-15,95;UBERON:0002020,2.55e-15,34;UBERON:0002616,9.38e-14,46;UBERON:0003080,2.22e-13,40;UBERON:0002780,3.36e-13,39;UBERON:0001890,3.36e-13,39;UBERON:0006240,3.36e-13,39;UBERON:0010371,3.50e-13,73;UBERON:0000955,6.64e-13,47;UBERON:0006238,6.64e-13,47;UBERON:0010314,2.32e-12,92;UBERON:0003528,2.92e-12,29;UBERON:0002791,2.92e-12,29;UBERON:0001893,2.92e-12,29;UBERON:0003056,1.12e-11,49;UBERON:0000956,1.58e-08,21;UBERON:0001869,1.58e-08,21;UBERON:0000203,1.58e-08,21;UBERON:0002619,1.69e-07,17 | |||
|phase1_expression=9.28863313207805,10.4692622291808,8.18998630901165,6.65421264875026,6.01074875935617,4.53274034162102,7.94282978024787,5.16493293766305,11.403886494285,14.0438715793196,3.4243593645101,5.90313976565489,4.45121897821135,6.03200776691082,7.66152452176024,6.07425802169478,4.89693314689703,5.52058789376916,4.79900517620086,8.06340338416257,13.2667532635669,11.5177503393027,9.66439219814061,7.03966660290989,6.65286915094793,5.16808767703518,7.32295393470427,7.75696437669201,10.2612646506442,5.79669298447841,8.86922042621219,10.7955214488137,11.6862309641068,31.6963362030877,2.59966457776147,6.31691652362271,5.51257261908397,3.76678467663217,7.0320181007142,5.75876118371178,5.29408339227913,0.683045484958446,4.36959317728038,5.41356317294982,6.18399280439039,7.34187008646726,7.82391344348039,6.75877984779384,9.22681967484782,11.0825042472342,7.69925318939494,5.75010257459886,5.03347818173209,2.17608642603403,7.73015738027667,11.5766746216176,9.45560351797897,7.21940929188419,12.3413041124355,15.340738398889,16.4796164911607,6.43804610931351,6.22506357277798,3.5995988691256,0,1.4209602298922,5.99200221036809,4.99483796918021,9.85051316930538,9.72042755988173,9.67494822216357,12.5686433137674,15.4607978666129,11.7591167246356,9.4887016308054,11.9498442259303,9.91042928994498,12.896421146604,11.981309593987,15.0350368012421,12.4423195299277,13.022834263919,15.355064945076,11.8180148106653,9.62628960993904,14.142172102736,14.5219114415085,16.5895506784518,11.4346551933108,12.1670211771925,4.05810284182349,6.88339101585109,4.0798280022465,4.31762553310254,3.24888208723835,2.68816132258401,6.17955448579708,5.62420064507591,7.53379413348319,5.3000936176551,9.15482228548423,3.84979432242953,0,0,7.57718643539249,3.54703811665138,4.54972000513305,4.68153906848146,3.10725460376606,3.85949561568544,6.24547176358089,8.22056791442781,7.37969591219387,5.12456977878917,5.64425794251383,4.90099706185734,3.95511948374998,2.89198713839823,2.65383165584962,8.25010934731787,7.72945314611377,3.39412677194655,7.45567044872489,6.14839673724249,5.86450779077674,3.32094171771169,11.0229914545447,17.3971791988088,10.6738990741374,8.83764772488454,10.980014467647,11.6858547464964,9.56033761057521,9.2057564638919,12.259494629014,11.0324058886075,6.21220119486929,6.46916247172484,6.57079171927554,1.47309299120532,7.67710613479952,11.0353010128067,9.90341713929421,5.72678307775717,7.68812440410005,6.91814089538189,7.02762934197966,2.84573707812917,10.1316956678436,8.88798576788751,5.63043597324636,6.79506770525482,5.00485048606076,2.78601733217733,1.85203922767149,7.16523360546575,13.3420505589515,13.1247432628505,9.94572247884574,14.2916783049496,10.3191466391682,5.94204802821349,7.10234206755631,8.46086196513836,6.63348585415727,4.65067889500816,5.90201483079162,5.60473643362414,5.26591519723137,3.94001913789829,4.62092214411378,1.60819986167866,3.29325172936576,4.02619256281115,8.62188789112922,8.23236899034275,5.94753809370836,5.02456076660734,7.89166526980366,8.82499353069666,5.54130083685001,4.43703754171354,5.11469500843202,7.60902504450237,6.16887780007865,7.24675400785648,8.29406189040889,7.75930240960488,6.62877896205008,4.49409704327111,4.75503709724327,8.16479220342906,9.48339504765408,6.85491075658373,5.63538678365402,8.14605311381257,8.33995694820791,6.24208797023835,4.67950374719504,4.28069429140846,5.33795674660674,5.92306386824642,3.26097889795864,6.00642380577939,9.04171377520734,3.82265591054251,6.8972441272091,5.788251834058,4.07401362850272,4.60313819921297,4.86405680325106,3.0201755450689,4.31304619582064,2.97712758134803,5.30464044294753,3.03094653536534,2.33216637578486,4.3419916922703,2.58654466233247,13.0749074121634,6.84452901056509,7.46878377410828,4.22442446919304,2.68010011906905,3.09456733151818,5.46374214001837,3.4679731703362,5.97954662051692,3.82691444777969,3.93271955317771,1.89953480052485,4.05017364028232,3.01582567878545,2.17562273527484,6.39293554924747,3.58717770196152,15.412856638828,13.0104972117346,9.01642199571715,8.58401152494868,13.566853434899,14.055794794679,12.2791336707695,6.4521575447189,11.3627323782021,10.190755108398,14.5731852602962,9.05993159525067,9.88219444866309,3.53453448063988,3.97432238583152,4.98583690268315,6.35259141478947,4.45419332025846,0,8.49732226542435,7.25576536715402,3.96070667487386,3.54362271456927,3.3817866273832,5.42699415653264,3.27180356529755,2.49548164869305,2.52829406348653,3.16255825724996,2.06271086496374,4.76615448055303,10.0834212657534,9.44318391614108,10.0738406464848,7.98031051390231,8.02659679209317,6.41741180348272,7.91608867697958,6.33613611772018,4.02480934641258,3.52845436887939,1.81374878235628,4.52100394748536,2.89502039655148,4.05865969610664,2.46211349617592,6.12109756922687,16.8737024829564,5.29699730473343,6.60437977482312,6.2966139305702,5.83942216714542,3.69074414846768,4.11800711771741,6.96911562974807,7.27747552083022,9.39759821870082,5.72802370809068,11.3880957689209,5.89626454667861,6.91234181259528,3.13632444021703,2.40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| |||
|short_description=p2@Rtcd1 | |||
}} |
Revision as of 22:05, 5 August 2015
Short description: | p2@Rtcd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rtcd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000153005_5end |
EntrezGene: | 66368 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.14e-15 | 33 |
neuronal stem cell | 2.14e-15 | 33 |
neuroblast | 2.14e-15 | 33 |
electrically signaling cell | 2.14e-15 | 33 |
ectodermal cell | 2.50e-15 | 44 |
neurectodermal cell | 2.50e-15 | 44 |
neural cell | 4.13e-15 | 43 |
electrically responsive cell | 7.22e-15 | 39 |
electrically active cell | 7.22e-15 | 39 |
CNS neuron (sensu Vertebrata) | 4.42e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.42e-12 | 23 |
stem cell | 5.09e-08 | 97 |
embryonic cell | 1.57e-07 | 70 |
somatic stem cell | 9.19e-07 | 91 |
multi fate stem cell | 9.19e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.81e-23 | 75 |
central nervous system | 1.96e-22 | 73 |
regional part of nervous system | 3.88e-18 | 54 |
neural tube | 2.01e-17 | 52 |
neural rod | 2.01e-17 | 52 |
future spinal cord | 2.01e-17 | 52 |
neural keel | 2.01e-17 | 52 |
neurectoderm | 2.50e-17 | 64 |
neural plate | 2.50e-17 | 64 |
presumptive neural plate | 2.50e-17 | 64 |
ectoderm-derived structure | 2.16e-15 | 95 |
ectoderm | 2.16e-15 | 95 |
presumptive ectoderm | 2.16e-15 | 95 |
gray matter | 2.55e-15 | 34 |
regional part of brain | 9.38e-14 | 46 |
anterior neural tube | 2.22e-13 | 40 |
regional part of forebrain | 3.36e-13 | 39 |
forebrain | 3.36e-13 | 39 |
future forebrain | 3.36e-13 | 39 |
ecto-epithelium | 3.50e-13 | 73 |
brain | 6.64e-13 | 47 |
future brain | 6.64e-13 | 47 |
structure with developmental contribution from neural crest | 2.32e-12 | 92 |
brain grey matter | 2.92e-12 | 29 |
regional part of telencephalon | 2.92e-12 | 29 |
telencephalon | 2.92e-12 | 29 |
pre-chordal neural plate | 1.12e-11 | 49 |
cerebral cortex | 1.58e-08 | 21 |
cerebral hemisphere | 1.58e-08 | 21 |
pallium | 1.58e-08 | 21 |
regional part of cerebral cortex | 1.69e-07 | 17 |