FFCP PHASE1:Mm9::chrX:10294565..10294576,+: Difference between revisions
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{{FFCP|EntrezGene=68041|HGNC=|MCL_coexpression_id=3733|UniProt=F7D5Q6|association_with_transcript=-17bp_to_ENSMUST00000156321_5end|description=CAGE_peak_4_at_Mid1ip1_5end|id=chrX:10294565..10294576,+|ontology_enrichment_celltype=CL:0000055!1.75e-18!50;CL:0000221!5.22e-17!44;CL:0000133!5.22e-17!44;CL:0002319!1.17e-16!43;CL:0000393!4.39e-13!39;CL:0000211!4.39e-13!39;CL:0000117!1.72e-12!23;CL:0000337!1.72e-12!23;CL:0000540!1.64e-11!33;CL:0000047!1.64e-11!33;CL:0000031!1.64e-11!33;CL:0000404!1.64e-11!33;CL:0002321!5.73e-09!70;CL:0000220!5.73e-09!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.75e-18,44;CL:0000133,1.75e-18,44;CL:0002319,4.31e-18,43;CL:0000393,4.04e-14,39;CL:0000211,4.04e-14,39;CL:0000117,8.48e-14,23;CL:0000337,8.48e-14,23;CL:0000540,2.33e-12,33;CL:0000047,2.33e-12,33;CL:0000031,2.33e-12,33;CL:0000404,2.33e-12,33;CL:0002321,3.87e-11,70;CL:0000333,6.36e-07,10;CL:0000095,6.36e-07,10;CL:0000243,6.36e-07,10;CL:0000123,6.36e-07,10;CL:0000125,6.36e-07,10;CL:0000030,6.36e-07,10;CL:0000339,6.36e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.49e-25!75;UBERON:0001016!3.49e-25!75;UBERON:0001017!3.73e-24!73;UBERON:0005743!3.73e-24!73;UBERON:0004121!6.56e-22!102;UBERON:0000924!6.56e-22!102;UBERON:0006601!6.56e-22!102;UBERON:0001049!5.78e-18!52;UBERON:0005068!5.78e-18!52;UBERON:0006241!5.78e-18!52;UBERON:0007135!5.78e-18!52;UBERON:0000955!2.23e-16!50;UBERON:0006238!2.23e-16!50;UBERON:0002346!3.48e-16!71;UBERON:0003075!3.48e-16!71;UBERON:0007284!3.48e-16!71;UBERON:0000033!4.01e-16!63;UBERON:0002616!5.57e-16!49;UBERON:0002020!1.64e-13!34;UBERON:0003080!7.10e-11!40;UBERON:0002791!2.07e-10!29;UBERON:0003528!2.07e-10!29;UBERON:0001893!2.07e-10!29;UBERON:0002780!2.30e-10!39;UBERON:0001890!2.30e-10!39;UBERON:0006240!2.30e-10!39;UBERON:0003056!2.35e-10!49;UBERON:0004111!6.61e-09!122;UBERON:0003076!1.25e-08!12;UBERON:0003057!1.25e-08!12;UBERON:0000025!2.47e-08!114;UBERON:0000956!9.23e-07!21;UBERON:0001869!9.23e-07!21;UBERON:0000203!9.23e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.92e-27,75;UBERON:0001017,9.52e-26,73;UBERON:0004121,8.83e-24,95;UBERON:0000924,8.83e-24,95;UBERON:0006601,8.83e-24,95;UBERON:0000073,1.30e-20,54;UBERON:0001049,3.43e-19,52;UBERON:0005068,3.43e-19,52;UBERON:0006241,3.43e-19,52;UBERON:0007135,3.43e-19,52;UBERON:0002346,3.69e-18,64;UBERON:0003075,3.69e-18,64;UBERON:0007284,3.69e-18,64;UBERON:0010371,1.51e-16,73;UBERON:0000955,2.09e-15,47;UBERON:0006238,2.09e-15,47;UBERON:0002616,5.61e-15,46;UBERON:0002020,1.14e-14,34;UBERON:0010314,9.31e-13,92;UBERON:0003080,2.29e-11,40;UBERON:0003528,3.24e-11,29;UBERON:0002791,3.24e-11,29;UBERON:0001893,3.24e-11,29;UBERON:0003056,7.13e-11,49;UBERON:0002780,8.31e-11,39;UBERON:0001890,8.31e-11,39;UBERON:0006240,8.31e-11,39;UBERON:0003076,1.78e-09,12;UBERON:0003057,1.78e-09,12;UBERON:0004111,2.65e-09,122;UBERON:0000025,5.29e-09,114;UBERON:0000956,3.68e-07,21;UBERON:0001869,3.68e-07,21;UBERON:0000203,3.68e-07,21|phase1_expression=1.28119077683835,0.697950815278722,0,0,0,0.839396359559449,0.700837921786577,0.258246646883153,0,0,0.171217968225505,0.0797721589953364,0,0.262261207256992,0.333109761815663,0.809901069559304,0,0.630924330716475,0.959801035240171,0,1.9559956734746,0.397163804803541,0.522399578277871,0.47997726838022,0,0,0.430761996159075,0.430942465371778,0.190023419456374,0.504060259519861,1.10865255327652,0.635030673459631,0.61506478758457,0,0.288851619751275,0.332469290716985,0.204169356262369,5.02237956884289,3.1253413780952,4.18818995179039,4.1176204162171,3.41522742479223,2.91306211818692,2.01434908760924,1.31790010585369,2.75320128242522,3.9119567217402,4.36050312760893,3.29529274101708,5.05517737593137,1.95980990275508,4.31257693094915,1.00669563634642,0,0.336093799142464,3.08711323243136,3.72493471920384,1.54701627683233,3.43937983461316,3.70293685490423,3.80298842103708,0.677689064138264,1.77858959222228,5.39939830368839,5.93319817540185,3.5524005747305,5.39280198933128,6.53171119046643,1.45165457231869,1.62007125998029,2.94454945891935,5.99867067247988,5.96345060569357,2.44981598429908,3.45043695665651,4.5960939330501,8.8092704799511,3.57524546638526,5.9906547969935,4.74790635828698,2.19570344645783,4.16730696445408,6.97957497503452,4.50210088025344,3.20876320331301,7.07108605136802,4.8406371471695,5.03278503728312,3.40767869999328,3.02286240427142,1.15945795480671,1.72084775396277,0,0.539703191637817,0,0,1.12355536105401,3.06774580640504,2.33807404142582,1.7666978725517,2.39433813620357,1.28326477414318,0,7.11066703153331,1.08245520505607,0.506719730950197,1.51657333504435,0.79928715803342,0,0.148442139064825,0.693941307064543,1.21786191324856,1.38369298353635,2.11011696773672,1.05829836422134,1.38233250462643,0.494389935468748,2.31358971071859,0.884610551949874,0.485300549842228,0.662524555381181,0.484875253135222,1.86391761218122,3.51336956413857,6.49284791121711,0.766371165625774,0.599075622529601,0,0.635351135365324,4.19413790333504,2.28750301409313,4.0209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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68041 | |||
|HGNC= | |||
|MCL_coexpression_id=3733 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F7D5Q6 | |||
|association_with_transcript=-17bp_to_ENSMUST00000156321_5end | |||
|cluster_id=chrX:10294565..10294576,+ | |||
|description=CAGE_peak_4_at_Mid1ip1_5end | |||
|id=chrX:10294565..10294576,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.75e-18!50;CL:0000221!5.22e-17!44;CL:0000133!5.22e-17!44;CL:0002319!1.17e-16!43;CL:0000393!4.39e-13!39;CL:0000211!4.39e-13!39;CL:0000117!1.72e-12!23;CL:0000337!1.72e-12!23;CL:0000540!1.64e-11!33;CL:0000047!1.64e-11!33;CL:0000031!1.64e-11!33;CL:0000404!1.64e-11!33;CL:0002321!5.73e-09!70;CL:0000220!5.73e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.75e-18,44;CL:0000133,1.75e-18,44;CL:0002319,4.31e-18,43;CL:0000393,4.04e-14,39;CL:0000211,4.04e-14,39;CL:0000117,8.48e-14,23;CL:0000337,8.48e-14,23;CL:0000540,2.33e-12,33;CL:0000047,2.33e-12,33;CL:0000031,2.33e-12,33;CL:0000404,2.33e-12,33;CL:0002321,3.87e-11,70;CL:0000333,6.36e-07,10;CL:0000095,6.36e-07,10;CL:0000243,6.36e-07,10;CL:0000123,6.36e-07,10;CL:0000125,6.36e-07,10;CL:0000030,6.36e-07,10;CL:0000339,6.36e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.49e-25!75;UBERON:0001016!3.49e-25!75;UBERON:0001017!3.73e-24!73;UBERON:0005743!3.73e-24!73;UBERON:0004121!6.56e-22!102;UBERON:0000924!6.56e-22!102;UBERON:0006601!6.56e-22!102;UBERON:0001049!5.78e-18!52;UBERON:0005068!5.78e-18!52;UBERON:0006241!5.78e-18!52;UBERON:0007135!5.78e-18!52;UBERON:0000955!2.23e-16!50;UBERON:0006238!2.23e-16!50;UBERON:0002346!3.48e-16!71;UBERON:0003075!3.48e-16!71;UBERON:0007284!3.48e-16!71;UBERON:0000033!4.01e-16!63;UBERON:0002616!5.57e-16!49;UBERON:0002020!1.64e-13!34;UBERON:0003080!7.10e-11!40;UBERON:0002791!2.07e-10!29;UBERON:0003528!2.07e-10!29;UBERON:0001893!2.07e-10!29;UBERON:0002780!2.30e-10!39;UBERON:0001890!2.30e-10!39;UBERON:0006240!2.30e-10!39;UBERON:0003056!2.35e-10!49;UBERON:0004111!6.61e-09!122;UBERON:0003076!1.25e-08!12;UBERON:0003057!1.25e-08!12;UBERON:0000025!2.47e-08!114;UBERON:0000956!9.23e-07!21;UBERON:0001869!9.23e-07!21;UBERON:0000203!9.23e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.92e-27,75;UBERON:0001017,9.52e-26,73;UBERON:0004121,8.83e-24,95;UBERON:0000924,8.83e-24,95;UBERON:0006601,8.83e-24,95;UBERON:0000073,1.30e-20,54;UBERON:0001049,3.43e-19,52;UBERON:0005068,3.43e-19,52;UBERON:0006241,3.43e-19,52;UBERON:0007135,3.43e-19,52;UBERON:0002346,3.69e-18,64;UBERON:0003075,3.69e-18,64;UBERON:0007284,3.69e-18,64;UBERON:0010371,1.51e-16,73;UBERON:0000955,2.09e-15,47;UBERON:0006238,2.09e-15,47;UBERON:0002616,5.61e-15,46;UBERON:0002020,1.14e-14,34;UBERON:0010314,9.31e-13,92;UBERON:0003080,2.29e-11,40;UBERON:0003528,3.24e-11,29;UBERON:0002791,3.24e-11,29;UBERON:0001893,3.24e-11,29;UBERON:0003056,7.13e-11,49;UBERON:0002780,8.31e-11,39;UBERON:0001890,8.31e-11,39;UBERON:0006240,8.31e-11,39;UBERON:0003076,1.78e-09,12;UBERON:0003057,1.78e-09,12;UBERON:0004111,2.65e-09,122;UBERON:0000025,5.29e-09,114;UBERON:0000956,3.68e-07,21;UBERON:0001869,3.68e-07,21;UBERON:0000203,3.68e-07,21 | |||
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| |||
|short_description=p4@Mid1ip1 | |||
}} |
Revision as of 22:01, 5 August 2015
Short description: | p4@Mid1ip1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Mid1ip1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3733 |
Association with transcript: | -17bp_to_ENSMUST00000156321_5end |
EntrezGene: | 68041 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.75e-18 | 44 |
neurectodermal cell | 1.75e-18 | 44 |
neural cell | 4.31e-18 | 43 |
electrically responsive cell | 4.04e-14 | 39 |
electrically active cell | 4.04e-14 | 39 |
CNS neuron (sensu Vertebrata) | 8.48e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.48e-14 | 23 |
neuron | 2.33e-12 | 33 |
neuronal stem cell | 2.33e-12 | 33 |
neuroblast | 2.33e-12 | 33 |
electrically signaling cell | 2.33e-12 | 33 |
embryonic cell | 3.87e-11 | 70 |
migratory neural crest cell | 6.36e-07 | 10 |
neuron associated cell | 6.36e-07 | 10 |
glial cell (sensu Vertebrata) | 6.36e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 6.36e-07 | 10 |
glial cell | 6.36e-07 | 10 |
glioblast | 6.36e-07 | 10 |
glioblast (sensu Vertebrata) | 6.36e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.92e-27 | 75 |
central nervous system | 9.52e-26 | 73 |
ectoderm-derived structure | 8.83e-24 | 95 |
ectoderm | 8.83e-24 | 95 |
presumptive ectoderm | 8.83e-24 | 95 |
regional part of nervous system | 1.30e-20 | 54 |
neural tube | 3.43e-19 | 52 |
neural rod | 3.43e-19 | 52 |
future spinal cord | 3.43e-19 | 52 |
neural keel | 3.43e-19 | 52 |
neurectoderm | 3.69e-18 | 64 |
neural plate | 3.69e-18 | 64 |
presumptive neural plate | 3.69e-18 | 64 |
ecto-epithelium | 1.51e-16 | 73 |
brain | 2.09e-15 | 47 |
future brain | 2.09e-15 | 47 |
regional part of brain | 5.61e-15 | 46 |
gray matter | 1.14e-14 | 34 |
structure with developmental contribution from neural crest | 9.31e-13 | 92 |
anterior neural tube | 2.29e-11 | 40 |
brain grey matter | 3.24e-11 | 29 |
regional part of telencephalon | 3.24e-11 | 29 |
telencephalon | 3.24e-11 | 29 |
pre-chordal neural plate | 7.13e-11 | 49 |
regional part of forebrain | 8.31e-11 | 39 |
forebrain | 8.31e-11 | 39 |
future forebrain | 8.31e-11 | 39 |
posterior neural tube | 1.78e-09 | 12 |
chordal neural plate | 1.78e-09 | 12 |
anatomical conduit | 2.65e-09 | 122 |
tube | 5.29e-09 | 114 |
cerebral cortex | 3.68e-07 | 21 |
cerebral hemisphere | 3.68e-07 | 21 |
pallium | 3.68e-07 | 21 |