FFCP PHASE1:Mm9::chr11:42233439..42233457,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14401|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=173bp_to_ENSMUST00000140463_5end|description=CAGE_peak_5_at_Gabrb2_5end|id=chr11:42233439..42233457,+|ontology_enrichment_celltype=CL:0000117!8.88e-13!23;CL:0000337!8.88e-13!23;CL:0000540!1.34e-08!33;CL:0000047!1.34e-08!33;CL:0000031!1.34e-08!33;CL:0000404!1.34e-08!33|ontology_enrichment_celltype_v019_2=CL:0002610,6.54e-10,3;CL:0002614,7.75e-09,3;CL:0000117,4.72e-08,23;CL:0000337,4.72e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.12e-20!52;UBERON:0005068!1.12e-20!52;UBERON:0006241!1.12e-20!52;UBERON:0007135!1.12e-20!52;UBERON:0001017!3.04e-20!73;UBERON:0005743!3.04e-20!73;UBERON:0000033!3.57e-20!63;UBERON:0000955!5.21e-20!50;UBERON:0006238!5.21e-20!50;UBERON:0002020!7.27e-20!34;UBERON:0000073!3.25e-19!75;UBERON:0001016!3.25e-19!75;UBERON:0002616!3.52e-19!49;UBERON:0002346!1.13e-18!71;UBERON:0003075!1.13e-18!71;UBERON:0007284!1.13e-18!71;UBERON:0003056!8.07e-17!49;UBERON:0002791!3.05e-16!29;UBERON:0003528!3.05e-16!29;UBERON:0001893!3.05e-16!29;UBERON:0004121!9.49e-15!102;UBERON:0000924!9.49e-15!102;UBERON:0006601!9.49e-15!102;UBERON:0003080!2.72e-14!40;UBERON:0002780!2.09e-13!39;UBERON:0001890!2.09e-13!39;UBERON:0006240!2.09e-13!39;UBERON:0007811!4.75e-11!86;UBERON:0000956!1.29e-10!21;UBERON:0001869!1.29e-10!21;UBERON:0000203!1.29e-10!21;UBERON:0002021!4.47e-10!10;UBERON:0000411!4.47e-10!10;UBERON:0001950!4.47e-10!10;UBERON:0002619!5.71e-10!17;UBERON:0000153!2.16e-09!94;UBERON:0003076!2.98e-07!12;UBERON:0003057!2.98e-07!12;UBERON:0002420!4.81e-07!8;UBERON:0007245!4.81e-07!8;UBERON:0010009!4.81e-07!8;UBERON:0010011!4.81e-07!8;UBERON:0000454!4.81e-07!8;UBERON:0002298!5.24e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.55e-37,54;UBERON:0001017,2.84e-32,73;UBERON:0001049,3.24e-32,52;UBERON:0005068,3.24e-32,52;UBERON:0006241,3.24e-32,52;UBERON:0007135,3.24e-32,52;UBERON:0001016,3.00e-31,75;UBERON:0000955,4.94e-31,47;UBERON:0006238,4.94e-31,47;UBERON:0002616,4.03e-29,46;UBERON:0002346,3.50e-27,64;UBERON:0003075,3.50e-27,64;UBERON:0007284,3.50e-27,64;UBERON:0004121,4.27e-25,95;UBERON:0000924,4.27e-25,95;UBERON:0006601,4.27e-25,95;UBERON:0002021,1.27e-24,10;UBERON:0000411,1.27e-24,10;UBERON:0001950,1.27e-24,10;UBERON:0002020,1.45e-23,34;UBERON:0010371,4.07e-23,73;UBERON:0003080,1.16e-22,40;UBERON:0003528,1.16e-22,29;UBERON:0002791,1.16e-22,29;UBERON:0001893,1.16e-22,29;UBERON:0002780,1.17e-20,39;UBERON:0001890,1.17e-20,39;UBERON:0006240,1.17e-20,39;UBERON:0003056,1.33e-19,49;UBERON:0010314,3.88e-17,92;UBERON:0002619,1.27e-16,17;UBERON:0000956,1.00e-15,21;UBERON:0001869,1.00e-15,21;UBERON:0000203,1.00e-15,21;UBERON:0002950,1.32e-11,4;UBERON:0001891,1.32e-11,4;UBERON:0009616,1.32e-11,4;UBERON:0010286,1.32e-11,4;UBERON:0000025,1.38e-11,114;UBERON:0004111,1.89e-10,122;UBERON:0004684,6.54e-10,3;UBERON:0002275,6.54e-10,3;UBERON:0003076,7.22e-10,12;UBERON:0003057,7.22e-10,12;UBERON:0002038,7.75e-09,3;UBERON:0009663,7.75e-09,3;UBERON:0009661,7.75e-09,3;UBERON:0000125,7.75e-09,3;UBERON:0002308,7.75e-09,3;UBERON:0011216,3.28e-08,194;UBERON:0002420,4.30e-08,8;UBERON:0007245,4.30e-08,8;UBERON:0010009,4.30e-08,8;UBERON:0010011,4.30e-08,8;UBERON:0000454,4.30e-08,8;UBERON:0004733,9.43e-08,6;UBERON:0004732,9.43e-08,6;UBERON:0002028,9.43e-08,6;UBERON:0007277,9.43e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,1.90149421051854,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0.571301968807607,0.662605622854841,0.122490799214954,0.191690942036473,0,12.1127469099328,9.83192503255945,10.4452442614246,0.131886287730194,0.548925861614458,0.52091337055676,2.51264699101243,4.50210088025344,5.65353516774197,1.17851434189467,1.28134512719193,0.559198337475902,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0.220841518460394,0,0,7.61230072230023,6.49284791121711,0,0,0,0,11.9832511523858,3.66000482254901,1.25654352112864,4.34560800480691,4.34716277461562,7.89594569326328,6.32740925964255,0.101839363850316,0,0,0.841767423545896,0,0.459804208866946,0,0.150704817835715,0.272145996605311,0.768682321709099,0.187403449119458,1.29351685369508,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0.268273401399619,0.116765342367169,0,0,0,0,0,0,3.15434922846191,0.617427674275707,0,0,0.213288250535234,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37156238974363,4.33683240391152,0,0,0.315508219416257,0,0,0,0,0,0,0,0.395287777946524,3.21321316421807,0.283880170416537,0,0.325773918707152,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0,0,0.258319646955462,0.168956125490778,0.58678619322877,0.2604087696879,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,2.82375921308533,3.22227665555024,2.29158205375759,4.29632955859219,3.42541259885321,3.0215755895588,4.72515750162264,4.05289082901798,1.81256963593682,5.1776031175182,0,0,0.341467211508268,0,0,0.367687016900028,0.44449345560323,0.206035057238894,0.64183841918363,0,0,0.565879024158229,0.280924522409647,0,0.114870937911227,0.952587382566147,0.347652977834566,0,0,0.294397840268795,0,0.177475806159338,0.476872379894642,0.290692833264657,0.0941093804153306,0.169229215783353,0.182927972872773,0.263069711437843,0.271608227691724,0,0.593175090620871,0.591026894253381,0.409231043169689,0,0.385813221962283,0,0.233931608445408,0,0.382576664137687,0.220591419119515,0.463735671240843|short_description=p5@Gabrb2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14401 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=173bp_to_ENSMUST00000140463_5end | |||
|cluster_id=chr11:42233439..42233457,+ | |||
|description=CAGE_peak_5_at_Gabrb2_5end | |||
|id=chr11:42233439..42233457,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.88e-13!23;CL:0000337!8.88e-13!23;CL:0000540!1.34e-08!33;CL:0000047!1.34e-08!33;CL:0000031!1.34e-08!33;CL:0000404!1.34e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,6.54e-10,3;CL:0002614,7.75e-09,3;CL:0000117,4.72e-08,23;CL:0000337,4.72e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.12e-20!52;UBERON:0005068!1.12e-20!52;UBERON:0006241!1.12e-20!52;UBERON:0007135!1.12e-20!52;UBERON:0001017!3.04e-20!73;UBERON:0005743!3.04e-20!73;UBERON:0000033!3.57e-20!63;UBERON:0000955!5.21e-20!50;UBERON:0006238!5.21e-20!50;UBERON:0002020!7.27e-20!34;UBERON:0000073!3.25e-19!75;UBERON:0001016!3.25e-19!75;UBERON:0002616!3.52e-19!49;UBERON:0002346!1.13e-18!71;UBERON:0003075!1.13e-18!71;UBERON:0007284!1.13e-18!71;UBERON:0003056!8.07e-17!49;UBERON:0002791!3.05e-16!29;UBERON:0003528!3.05e-16!29;UBERON:0001893!3.05e-16!29;UBERON:0004121!9.49e-15!102;UBERON:0000924!9.49e-15!102;UBERON:0006601!9.49e-15!102;UBERON:0003080!2.72e-14!40;UBERON:0002780!2.09e-13!39;UBERON:0001890!2.09e-13!39;UBERON:0006240!2.09e-13!39;UBERON:0007811!4.75e-11!86;UBERON:0000956!1.29e-10!21;UBERON:0001869!1.29e-10!21;UBERON:0000203!1.29e-10!21;UBERON:0002021!4.47e-10!10;UBERON:0000411!4.47e-10!10;UBERON:0001950!4.47e-10!10;UBERON:0002619!5.71e-10!17;UBERON:0000153!2.16e-09!94;UBERON:0003076!2.98e-07!12;UBERON:0003057!2.98e-07!12;UBERON:0002420!4.81e-07!8;UBERON:0007245!4.81e-07!8;UBERON:0010009!4.81e-07!8;UBERON:0010011!4.81e-07!8;UBERON:0000454!4.81e-07!8;UBERON:0002298!5.24e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.55e-37,54;UBERON:0001017,2.84e-32,73;UBERON:0001049,3.24e-32,52;UBERON:0005068,3.24e-32,52;UBERON:0006241,3.24e-32,52;UBERON:0007135,3.24e-32,52;UBERON:0001016,3.00e-31,75;UBERON:0000955,4.94e-31,47;UBERON:0006238,4.94e-31,47;UBERON:0002616,4.03e-29,46;UBERON:0002346,3.50e-27,64;UBERON:0003075,3.50e-27,64;UBERON:0007284,3.50e-27,64;UBERON:0004121,4.27e-25,95;UBERON:0000924,4.27e-25,95;UBERON:0006601,4.27e-25,95;UBERON:0002021,1.27e-24,10;UBERON:0000411,1.27e-24,10;UBERON:0001950,1.27e-24,10;UBERON:0002020,1.45e-23,34;UBERON:0010371,4.07e-23,73;UBERON:0003080,1.16e-22,40;UBERON:0003528,1.16e-22,29;UBERON:0002791,1.16e-22,29;UBERON:0001893,1.16e-22,29;UBERON:0002780,1.17e-20,39;UBERON:0001890,1.17e-20,39;UBERON:0006240,1.17e-20,39;UBERON:0003056,1.33e-19,49;UBERON:0010314,3.88e-17,92;UBERON:0002619,1.27e-16,17;UBERON:0000956,1.00e-15,21;UBERON:0001869,1.00e-15,21;UBERON:0000203,1.00e-15,21;UBERON:0002950,1.32e-11,4;UBERON:0001891,1.32e-11,4;UBERON:0009616,1.32e-11,4;UBERON:0010286,1.32e-11,4;UBERON:0000025,1.38e-11,114;UBERON:0004111,1.89e-10,122;UBERON:0004684,6.54e-10,3;UBERON:0002275,6.54e-10,3;UBERON:0003076,7.22e-10,12;UBERON:0003057,7.22e-10,12;UBERON:0002038,7.75e-09,3;UBERON:0009663,7.75e-09,3;UBERON:0009661,7.75e-09,3;UBERON:0000125,7.75e-09,3;UBERON:0002308,7.75e-09,3;UBERON:0011216,3.28e-08,194;UBERON:0002420,4.30e-08,8;UBERON:0007245,4.30e-08,8;UBERON:0010009,4.30e-08,8;UBERON:0010011,4.30e-08,8;UBERON:0000454,4.30e-08,8;UBERON:0004733,9.43e-08,6;UBERON:0004732,9.43e-08,6;UBERON:0002028,9.43e-08,6;UBERON:0007277,9.43e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,1.90149421051854,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0.571301968807607,0.662605622854841,0.122490799214954,0.191690942036473,0,12.1127469099328,9.83192503255945,10.4452442614246,0.131886287730194,0.548925861614458,0.52091337055676,2.51264699101243,4.50210088025344,5.65353516774197,1.17851434189467,1.28134512719193,0.559198337475902,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0.220841518460394,0,0,7.61230072230023,6.49284791121711,0,0,0,0,11.9832511523858,3.66000482254901,1.25654352112864,4.34560800480691,4.34716277461562,7.89594569326328,6.32740925964255,0.101839363850316,0,0,0.841767423545896,0,0.459804208866946,0,0.150704817835715,0.272145996605311,0.768682321709099,0.187403449119458,1.29351685369508,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0.268273401399619,0.116765342367169,0,0,0,0,0,0,3.15434922846191,0.617427674275707,0,0,0.213288250535234,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37156238974363,4.33683240391152,0,0,0.315508219416257,0,0,0,0,0,0,0,0.395287777946524,3.21321316421807,0.283880170416537,0,0.325773918707152,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0,0,0.258319646955462,0.168956125490778,0.58678619322877,0.2604087696879,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,2.82375921308533,3.22227665555024,2.29158205375759,4.29632955859219,3.42541259885321,3.0215755895588,4.72515750162264,4.05289082901798,1.81256963593682,5.1776031175182,0,0,0.341467211508268,0,0,0.367687016900028,0.44449345560323,0.206035057238894,0.64183841918363,0,0,0.565879024158229,0.280924522409647,0,0.114870937911227,0.952587382566147,0.347652977834566,0,0,0.294397840268795,0,0.177475806159338,0.476872379894642,0.290692833264657,0.0941093804153306,0.169229215783353,0.182927972872773,0.263069711437843,0.271608227691724,0,0.593175090620871,0.591026894253381,0.409231043169689,0,0.385813221962283,0,0.233931608445408,0,0.382576664137687,0.220591419119515,0.463735671240843 | |||
|short_description=p5@Gabrb2 | |||
}} |
Revision as of 21:59, 5 August 2015
Short description: | p5@Gabrb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Gabrb2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 173bp_to_ENSMUST00000140463_5end |
EntrezGene: | 14401 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 6.54e-10 | 3 |
neuron of the substantia nigra | 7.75e-09 | 3 |
CNS neuron (sensu Vertebrata) | 4.72e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.72e-08 | 23 |