FFCP PHASE1:Mm9::chr1:66518633..66518654,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=42|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:66518633..66518654,+|id=chr1:66518633..66518654,+|ontology_enrichment_celltype=CL:0002610!3.65e-08!3;CL:0000117!1.44e-07!23;CL:0000337!1.44e-07!23;CL:0002614!9.31e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,6.63e-23,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!6.00e-36!50;UBERON:0006238!6.00e-36!50;UBERON:0002616!2.59e-34!49;UBERON:0000033!6.47e-33!63;UBERON:0001049!3.62e-31!52;UBERON:0005068!3.62e-31!52;UBERON:0006241!3.62e-31!52;UBERON:0007135!3.62e-31!52;UBERON:0001017!1.05e-29!73;UBERON:0005743!1.05e-29!73;UBERON:0000073!1.07e-28!75;UBERON:0001016!1.07e-28!75;UBERON:0002346!7.71e-26!71;UBERON:0003075!7.71e-26!71;UBERON:0007284!7.71e-26!71;UBERON:0003056!1.45e-23!49;UBERON:0003080!1.58e-23!40;UBERON:0004121!4.41e-23!102;UBERON:0000924!4.41e-23!102;UBERON:0006601!4.41e-23!102;UBERON:0002021!2.60e-22!10;UBERON:0000411!2.60e-22!10;UBERON:0001950!2.60e-22!10;UBERON:0002780!4.40e-22!39;UBERON:0001890!4.40e-22!39;UBERON:0006240!4.40e-22!39;UBERON:0007811!5.30e-22!86;UBERON:0002020!2.20e-21!34;UBERON:0002791!1.46e-20!29;UBERON:0003528!1.46e-20!29;UBERON:0001893!1.46e-20!29;UBERON:0000153!1.86e-19!94;UBERON:0002619!1.63e-14!17;UBERON:0000956!2.19e-13!21;UBERON:0001869!2.19e-13!21;UBERON:0000203!2.19e-13!21;UBERON:0002298!1.82e-11!6;UBERON:0000025!2.64e-10!114;UBERON:0004111!3.61e-09!122;UBERON:0002420!1.60e-08!8;UBERON:0007245!1.60e-08!8;UBERON:0010009!1.60e-08!8;UBERON:0010011!1.60e-08!8;UBERON:0000454!1.60e-08!8;UBERON:0000475!1.98e-08!200;UBERON:0002950!2.21e-08!4;UBERON:0001891!2.21e-08!4;UBERON:0009616!2.21e-08!4;UBERON:0004684!3.65e-08!3;UBERON:0002275!3.65e-08!3;UBERON:0003076!5.98e-08!12;UBERON:0003057!5.98e-08!12;UBERON:0000064!4.29e-07!99;UBERON:0002038!9.31e-07!3;UBERON:0002308!9.31e-07!3;UBERON:0009663!9.31e-07!3;UBERON:0009661!9.31e-07!3;UBERON:0006331!9.31e-07!3;UBERON:0000125!9.31e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.37e-26,10;UBERON:0000411,7.37e-26,10;UBERON:0001950,7.37e-26,10;UBERON:0004684,6.63e-23,3;UBERON:0002275,6.63e-23,3;UBERON:0000073,1.17e-15,54;UBERON:0002619,3.62e-15,17;UBERON:0000956,3.03e-12,21;UBERON:0001869,3.03e-12,21;UBERON:0000203,3.03e-12,21;UBERON:0001017,2.42e-11,73;UBERON:0001016,5.15e-11,75;UBERON:0002616,1.19e-09,46;UBERON:0000955,1.97e-09,47;UBERON:0006238,1.97e-09,47;UBERON:0003528,8.37e-09,29;UBERON:0002791,8.37e-09,29;UBERON:0001893,8.37e-09,29;UBERON:0002037,1.25e-08,4;UBERON:0002680,1.25e-08,4;UBERON:0001895,1.25e-08,4;UBERON:0010092,1.25e-08,4;UBERON:0006215,1.25e-08,4;UBERON:0004121,1.76e-08,95;UBERON:0000924,1.76e-08,95;UBERON:0006601,1.76e-08,95;UBERON:0001049,1.84e-08,52;UBERON:0005068,1.84e-08,52;UBERON:0006241,1.84e-08,52;UBERON:0007135,1.84e-08,52;UBERON:0002020,1.81e-07,34;UBERON:0002346,9.63e-07,64;UBERON:0003075,9.63e-07,64;UBERON:0007284,9.63e-07,64|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662605622854841,0,0,0,2.20231761998777,1.14918604276669,1.22885226604995,0.263772575460388,0.0914876436024097,0,0.558365998002762,0.56276261003168,0.15279824777681,0.589257170947335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75668478206928,11.9384622883669,0,0,0,0,0.299581278809645,0.457500602818626,0,0.347648640384553,0.511430914660661,0.83115217823824,0.324482526135515,0,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0.363533729477506,0,0,1.05418608574999,0,0.340439605753788,0,0,0,0,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.920650473014354,1.14579102687879,1.20297227640581,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0.906284817968409,1.03552062350364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197008964751127,0,0,0,0,0,0,0,0,0|short_description=p@chr1:66518633..66518654,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=42 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:66518633..66518654,+ | |||
|description=CAGE_peak_at_chr1:66518633..66518654,+ | |||
|id=chr1:66518633..66518654,+ | |||
|ontology_enrichment_celltype=CL:0002610!3.65e-08!3;CL:0000117!1.44e-07!23;CL:0000337!1.44e-07!23;CL:0002614!9.31e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,6.63e-23,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!6.00e-36!50;UBERON:0006238!6.00e-36!50;UBERON:0002616!2.59e-34!49;UBERON:0000033!6.47e-33!63;UBERON:0001049!3.62e-31!52;UBERON:0005068!3.62e-31!52;UBERON:0006241!3.62e-31!52;UBERON:0007135!3.62e-31!52;UBERON:0001017!1.05e-29!73;UBERON:0005743!1.05e-29!73;UBERON:0000073!1.07e-28!75;UBERON:0001016!1.07e-28!75;UBERON:0002346!7.71e-26!71;UBERON:0003075!7.71e-26!71;UBERON:0007284!7.71e-26!71;UBERON:0003056!1.45e-23!49;UBERON:0003080!1.58e-23!40;UBERON:0004121!4.41e-23!102;UBERON:0000924!4.41e-23!102;UBERON:0006601!4.41e-23!102;UBERON:0002021!2.60e-22!10;UBERON:0000411!2.60e-22!10;UBERON:0001950!2.60e-22!10;UBERON:0002780!4.40e-22!39;UBERON:0001890!4.40e-22!39;UBERON:0006240!4.40e-22!39;UBERON:0007811!5.30e-22!86;UBERON:0002020!2.20e-21!34;UBERON:0002791!1.46e-20!29;UBERON:0003528!1.46e-20!29;UBERON:0001893!1.46e-20!29;UBERON:0000153!1.86e-19!94;UBERON:0002619!1.63e-14!17;UBERON:0000956!2.19e-13!21;UBERON:0001869!2.19e-13!21;UBERON:0000203!2.19e-13!21;UBERON:0002298!1.82e-11!6;UBERON:0000025!2.64e-10!114;UBERON:0004111!3.61e-09!122;UBERON:0002420!1.60e-08!8;UBERON:0007245!1.60e-08!8;UBERON:0010009!1.60e-08!8;UBERON:0010011!1.60e-08!8;UBERON:0000454!1.60e-08!8;UBERON:0000475!1.98e-08!200;UBERON:0002950!2.21e-08!4;UBERON:0001891!2.21e-08!4;UBERON:0009616!2.21e-08!4;UBERON:0004684!3.65e-08!3;UBERON:0002275!3.65e-08!3;UBERON:0003076!5.98e-08!12;UBERON:0003057!5.98e-08!12;UBERON:0000064!4.29e-07!99;UBERON:0002038!9.31e-07!3;UBERON:0002308!9.31e-07!3;UBERON:0009663!9.31e-07!3;UBERON:0009661!9.31e-07!3;UBERON:0006331!9.31e-07!3;UBERON:0000125!9.31e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.37e-26,10;UBERON:0000411,7.37e-26,10;UBERON:0001950,7.37e-26,10;UBERON:0004684,6.63e-23,3;UBERON:0002275,6.63e-23,3;UBERON:0000073,1.17e-15,54;UBERON:0002619,3.62e-15,17;UBERON:0000956,3.03e-12,21;UBERON:0001869,3.03e-12,21;UBERON:0000203,3.03e-12,21;UBERON:0001017,2.42e-11,73;UBERON:0001016,5.15e-11,75;UBERON:0002616,1.19e-09,46;UBERON:0000955,1.97e-09,47;UBERON:0006238,1.97e-09,47;UBERON:0003528,8.37e-09,29;UBERON:0002791,8.37e-09,29;UBERON:0001893,8.37e-09,29;UBERON:0002037,1.25e-08,4;UBERON:0002680,1.25e-08,4;UBERON:0001895,1.25e-08,4;UBERON:0010092,1.25e-08,4;UBERON:0006215,1.25e-08,4;UBERON:0004121,1.76e-08,95;UBERON:0000924,1.76e-08,95;UBERON:0006601,1.76e-08,95;UBERON:0001049,1.84e-08,52;UBERON:0005068,1.84e-08,52;UBERON:0006241,1.84e-08,52;UBERON:0007135,1.84e-08,52;UBERON:0002020,1.81e-07,34;UBERON:0002346,9.63e-07,64;UBERON:0003075,9.63e-07,64;UBERON:0007284,9.63e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662605622854841,0,0,0,2.20231761998777,1.14918604276669,1.22885226604995,0.263772575460388,0.0914876436024097,0,0.558365998002762,0.56276261003168,0.15279824777681,0.589257170947335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75668478206928,11.9384622883669,0,0,0,0,0.299581278809645,0.457500602818626,0,0.347648640384553,0.511430914660661,0.83115217823824,0.324482526135515,0,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0.363533729477506,0,0,1.05418608574999,0,0.340439605753788,0,0,0,0,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.920650473014354,1.14579102687879,1.20297227640581,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0.906284817968409,1.03552062350364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197008964751127,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:66518633..66518654,+ | |||
}} |
Latest revision as of 21:40, 5 August 2015
Short description: | p@chr1:66518633..66518654, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:66518633..66518654, + |
Coexpression cluster: | MCL_coexpression_mm9:42 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 6.63e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 7.37e-26 | 10 |
visual cortex | 7.37e-26 | 10 |
neocortex | 7.37e-26 | 10 |
raphe nuclei | 6.63e-23 | 3 |
reticular formation | 6.63e-23 | 3 |
regional part of nervous system | 1.17e-15 | 54 |
regional part of cerebral cortex | 3.62e-15 | 17 |
cerebral cortex | 3.03e-12 | 21 |
cerebral hemisphere | 3.03e-12 | 21 |
pallium | 3.03e-12 | 21 |
central nervous system | 2.42e-11 | 73 |
nervous system | 5.15e-11 | 75 |
regional part of brain | 1.19e-09 | 46 |
brain | 1.97e-09 | 47 |
future brain | 1.97e-09 | 47 |
brain grey matter | 8.37e-09 | 29 |
regional part of telencephalon | 8.37e-09 | 29 |
telencephalon | 8.37e-09 | 29 |
cerebellum | 1.25e-08 | 4 |
regional part of metencephalon | 1.25e-08 | 4 |
metencephalon | 1.25e-08 | 4 |
future metencephalon | 1.25e-08 | 4 |
rhombic lip | 1.25e-08 | 4 |
ectoderm-derived structure | 1.76e-08 | 95 |
ectoderm | 1.76e-08 | 95 |
presumptive ectoderm | 1.76e-08 | 95 |
neural tube | 1.84e-08 | 52 |
neural rod | 1.84e-08 | 52 |
future spinal cord | 1.84e-08 | 52 |
neural keel | 1.84e-08 | 52 |
gray matter | 1.81e-07 | 34 |
neurectoderm | 9.63e-07 | 64 |
neural plate | 9.63e-07 | 64 |
presumptive neural plate | 9.63e-07 | 64 |