FFCP PHASE1:Mm9::chr15:81230483..81230523,-: Difference between revisions
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{{FFCP|EntrezGene=70356|HGNC=|MCL_coexpression_id=60|UniProt=E9Q1X9,E9Q5V1|association_with_transcript=0bp_to_ENSMUST00000163382,ENSMUST00000169204,uc007wwm.1_5end|description=CAGE_peak_4_at_St13_5end|id=chr15:81230483..81230523,-|ontology_enrichment_celltype=CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23;CL:0000540!1.56e-08!33;CL:0000047!1.56e-08!33;CL:0000031!1.56e-08!33;CL:0000404!1.56e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-09,23;CL:0000337,1.04e-09,23;CL:0000540,1.51e-08,33;CL:0000047,1.51e-08,33;CL:0000031,1.51e-08,33;CL:0000404,1.51e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.92e-17!63;UBERON:0000955!2.31e-16!50;UBERON:0006238!2.31e-16!50;UBERON:0001017!5.03e-16!73;UBERON:0005743!5.03e-16!73;UBERON:0003056!5.11e-16!49;UBERON:0002616!8.86e-16!49;UBERON:0000073!1.60e-15!75;UBERON:0001016!1.60e-15!75;UBERON:0001049!1.86e-15!52;UBERON:0005068!1.86e-15!52;UBERON:0006241!1.86e-15!52;UBERON:0007135!1.86e-15!52;UBERON:0002346!3.69e-15!71;UBERON:0003075!3.69e-15!71;UBERON:0007284!3.69e-15!71;UBERON:0003080!4.22e-15!40;UBERON:0002780!1.19e-14!39;UBERON:0001890!1.19e-14!39;UBERON:0006240!1.19e-14!39;UBERON:0007811!2.52e-14!86;UBERON:0000153!6.12e-14!94;UBERON:0002020!1.29e-13!34;UBERON:0002791!3.03e-13!29;UBERON:0003528!3.03e-13!29;UBERON:0001893!3.03e-13!29;UBERON:0004121!7.84e-13!102;UBERON:0000924!7.84e-13!102;UBERON:0006601!7.84e-13!102;UBERON:0000956!7.95e-10!21;UBERON:0001869!7.95e-10!21;UBERON:0000203!7.95e-10!21;UBERON:0002619!1.77e-07!17;UBERON:0002021!5.80e-07!10;UBERON:0000411!5.80e-07!10;UBERON:0001950!5.80e-07!10;UBERON:0000025!6.79e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.87e-17,64;UBERON:0003075,4.87e-17,64;UBERON:0007284,4.87e-17,64;UBERON:0000073,1.62e-16,54;UBERON:0003056,4.72e-16,49;UBERON:0001017,5.11e-16,73;UBERON:0001049,1.56e-15,52;UBERON:0005068,1.56e-15,52;UBERON:0006241,1.56e-15,52;UBERON:0007135,1.56e-15,52;UBERON:0001016,1.62e-15,75;UBERON:0003080,3.92e-15,40;UBERON:0010314,5.43e-15,92;UBERON:0000955,8.29e-15,47;UBERON:0006238,8.29e-15,47;UBERON:0002780,1.11e-14,39;UBERON:0001890,1.11e-14,39;UBERON:0006240,1.11e-14,39;UBERON:0002616,3.08e-14,46;UBERON:0010371,4.25e-14,73;UBERON:0004121,7.48e-14,95;UBERON:0000924,7.48e-14,95;UBERON:0006601,7.48e-14,95;UBERON:0002020,1.21e-13,34;UBERON:0003528,2.84e-13,29;UBERON:0002791,2.84e-13,29;UBERON:0001893,2.84e-13,29;UBERON:0000956,7.60e-10,21;UBERON:0001869,7.60e-10,21;UBERON:0000203,7.60e-10,21;UBERON:0002619,1.72e-07,17;UBERON:0002021,5.63e-07,10;UBERON:0000411,5.63e-07,10;UBERON:0001950,5.63e-07,10;UBERON:0000025,7.02e-07,114|phase1_expression=2.7225304007815,1.04692622291808,1.36499771816861,0.30246421130683,1.00179145989269,0.839396359559449,0.934450562382103,2.06597317506522,0.703943610758334,0.936258105287974,1.19852577757853,1.43589886191606,2.05440875917447,1.83582845079895,1.99865857089398,2.42970320867791,2.09868563438444,1.41957974411207,1.7824876368746,1.69755860719212,5.6128571499706,3.27660138962921,2.35079810225042,1.59992422793407,0.91763712426868,1.14846392823004,1.29228598847722,0.646413698057667,0.950117097281869,0.252030129759931,0.665191531965914,0.635030673459631,0.61506478758457,0,0.577703239502549,0.166234645358492,0.816677425049476,0.418531630736908,0.7813353445238,1.57057123192139,0,0,0.971020706062307,1.6366586336825,1.62203089951223,1.65192076945513,0,0.872100625521786,1.31811709640683,1.1665793944457,1.39986421625363,4.31257693094915,1.51004345451963,0.725362142011344,1.68046899571232,1.02903774414379,2.86533439938757,2.06268836910977,4.24864567805155,3.70293685490423,4.43681982454325,1.35537812827653,0,0.449949858640699,1.97773272513395,0,0.898800331555214,0.768436610643109,7.98410014775278,6.75029691658453,8.2026734927039,1.99955689082663,5.07997644188711,7.59442955132715,7.85932862349538,4.5960939330501,5.50579404996943,5.61824287574826,9.83081812839958,5.80299666012853,4.48289453651807,6.25096044668112,5.862842979029,3.37657566019008,6.72312290217964,3.24091444021034,5.83723891276322,2.98239113320481,1.81742863999642,2.49386148352392,2.02905142091174,1.72084775396277,1.3599426674155,1.61910957491345,0.649776417447669,0.896053774194671,2.94933282276679,2.21559419351475,2.33807404142582,2.12003744706204,2.39433813620357,1.28326477414318,0,0,1.73192832808971,1.52015919285059,2.52762222507392,2.16949371466214,1.55362730188303,1.92974780784272,2.60227990149204,1.82679286987285,2.07553947530453,2.41156224884196,2.23418543557839,2.26199864393416,0.741584903203122,1.87979163995885,5.30766331169925,3.07357014900077,4.19598885074748,6.30337829075789,0,4.09893115816166,2.51336048176146,0.766371165625774,2.03685711660064,0.599902730993408,2.54140454146129,5.09288173976397,4.57500602818627,7.16229807043327,8.16974304903699,8.95004100656157,6.85700547046548,5.51620294430376,3.56437773476107,2.11491850037158,1.26361379216837,2.10441855886474,2.60240885925407,4.59804208866946,2.70093194708024,2.41127708537144,5.2388104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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:70356 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q1X9,uniprot:E9Q5V1 | |||
|association_with_transcript=0bp_to_ENSMUST00000163382,ENSMUST00000169204,uc007wwm.1_5end | |||
|cluster_id=chr15:81230483..81230523,- | |||
|description=CAGE_peak_4_at_St13_5end | |||
|id=chr15:81230483..81230523,- | |||
|ontology_enrichment_celltype=CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23;CL:0000540!1.56e-08!33;CL:0000047!1.56e-08!33;CL:0000031!1.56e-08!33;CL:0000404!1.56e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-09,23;CL:0000337,1.04e-09,23;CL:0000540,1.51e-08,33;CL:0000047,1.51e-08,33;CL:0000031,1.51e-08,33;CL:0000404,1.51e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.92e-17!63;UBERON:0000955!2.31e-16!50;UBERON:0006238!2.31e-16!50;UBERON:0001017!5.03e-16!73;UBERON:0005743!5.03e-16!73;UBERON:0003056!5.11e-16!49;UBERON:0002616!8.86e-16!49;UBERON:0000073!1.60e-15!75;UBERON:0001016!1.60e-15!75;UBERON:0001049!1.86e-15!52;UBERON:0005068!1.86e-15!52;UBERON:0006241!1.86e-15!52;UBERON:0007135!1.86e-15!52;UBERON:0002346!3.69e-15!71;UBERON:0003075!3.69e-15!71;UBERON:0007284!3.69e-15!71;UBERON:0003080!4.22e-15!40;UBERON:0002780!1.19e-14!39;UBERON:0001890!1.19e-14!39;UBERON:0006240!1.19e-14!39;UBERON:0007811!2.52e-14!86;UBERON:0000153!6.12e-14!94;UBERON:0002020!1.29e-13!34;UBERON:0002791!3.03e-13!29;UBERON:0003528!3.03e-13!29;UBERON:0001893!3.03e-13!29;UBERON:0004121!7.84e-13!102;UBERON:0000924!7.84e-13!102;UBERON:0006601!7.84e-13!102;UBERON:0000956!7.95e-10!21;UBERON:0001869!7.95e-10!21;UBERON:0000203!7.95e-10!21;UBERON:0002619!1.77e-07!17;UBERON:0002021!5.80e-07!10;UBERON:0000411!5.80e-07!10;UBERON:0001950!5.80e-07!10;UBERON:0000025!6.79e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.87e-17,64;UBERON:0003075,4.87e-17,64;UBERON:0007284,4.87e-17,64;UBERON:0000073,1.62e-16,54;UBERON:0003056,4.72e-16,49;UBERON:0001017,5.11e-16,73;UBERON:0001049,1.56e-15,52;UBERON:0005068,1.56e-15,52;UBERON:0006241,1.56e-15,52;UBERON:0007135,1.56e-15,52;UBERON:0001016,1.62e-15,75;UBERON:0003080,3.92e-15,40;UBERON:0010314,5.43e-15,92;UBERON:0000955,8.29e-15,47;UBERON:0006238,8.29e-15,47;UBERON:0002780,1.11e-14,39;UBERON:0001890,1.11e-14,39;UBERON:0006240,1.11e-14,39;UBERON:0002616,3.08e-14,46;UBERON:0010371,4.25e-14,73;UBERON:0004121,7.48e-14,95;UBERON:0000924,7.48e-14,95;UBERON:0006601,7.48e-14,95;UBERON:0002020,1.21e-13,34;UBERON:0003528,2.84e-13,29;UBERON:0002791,2.84e-13,29;UBERON:0001893,2.84e-13,29;UBERON:0000956,7.60e-10,21;UBERON:0001869,7.60e-10,21;UBERON:0000203,7.60e-10,21;UBERON:0002619,1.72e-07,17;UBERON:0002021,5.63e-07,10;UBERON:0000411,5.63e-07,10;UBERON:0001950,5.63e-07,10;UBERON:0000025,7.02e-07,114 | |||
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| |||
|short_description=p4@St13 | |||
}} |
Revision as of 16:33, 5 August 2015
Short description: | p4@St13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_St13_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000163382, ENSMUST00000169204, uc007wwm.1_5end |
EntrezGene: | 70356 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.04e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-09 | 23 |
neuron | 1.51e-08 | 33 |
neuronal stem cell | 1.51e-08 | 33 |
neuroblast | 1.51e-08 | 33 |
electrically signaling cell | 1.51e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.87e-17 | 64 |
neural plate | 4.87e-17 | 64 |
presumptive neural plate | 4.87e-17 | 64 |
regional part of nervous system | 1.62e-16 | 54 |
pre-chordal neural plate | 4.72e-16 | 49 |
central nervous system | 5.11e-16 | 73 |
neural tube | 1.56e-15 | 52 |
neural rod | 1.56e-15 | 52 |
future spinal cord | 1.56e-15 | 52 |
neural keel | 1.56e-15 | 52 |
nervous system | 1.62e-15 | 75 |
anterior neural tube | 3.92e-15 | 40 |
structure with developmental contribution from neural crest | 5.43e-15 | 92 |
brain | 8.29e-15 | 47 |
future brain | 8.29e-15 | 47 |
regional part of forebrain | 1.11e-14 | 39 |
forebrain | 1.11e-14 | 39 |
future forebrain | 1.11e-14 | 39 |
regional part of brain | 3.08e-14 | 46 |
ecto-epithelium | 4.25e-14 | 73 |
ectoderm-derived structure | 7.48e-14 | 95 |
ectoderm | 7.48e-14 | 95 |
presumptive ectoderm | 7.48e-14 | 95 |
gray matter | 1.21e-13 | 34 |
brain grey matter | 2.84e-13 | 29 |
regional part of telencephalon | 2.84e-13 | 29 |
telencephalon | 2.84e-13 | 29 |
cerebral cortex | 7.60e-10 | 21 |
cerebral hemisphere | 7.60e-10 | 21 |
pallium | 7.60e-10 | 21 |
regional part of cerebral cortex | 1.72e-07 | 17 |
occipital lobe | 5.63e-07 | 10 |
visual cortex | 5.63e-07 | 10 |
neocortex | 5.63e-07 | 10 |
tube | 7.02e-07 | 114 |