FFCP PHASE1:Mm9::chr18:35000254..35000268,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=225362|HGNC=|MCL_coexpression_id=2234|UniProt=C1IE02,Q8VCD6|association_with_transcript=11bp_to_NM_001204914,NM_144865_5end|description=CAGE_peak_2_at_Reep2_5end|id=chr18:35000254..35000268,+|ontology_enrichment_celltype=CL:0002319!7.19e-15!43;CL:0000221!1.13e-14!44;CL:0000133!1.13e-14!44;CL:0000117!1.71e-13!23;CL:0000337!1.71e-13!23;CL:0000540!2.23e-12!33;CL:0000047!2.23e-12!33;CL:0000031!2.23e-12!33;CL:0000404!2.23e-12!33;CL:0000055!8.63e-10!50;CL:0000393!6.16e-08!39;CL:0000211!6.16e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-17,23;CL:0000337,1.52e-17,23;CL:0002319,5.56e-16,43;CL:0000221,2.57e-15,44;CL:0000133,2.57e-15,44;CL:0000540,2.13e-13,33;CL:0000047,2.13e-13,33;CL:0000031,2.13e-13,33;CL:0000404,2.13e-13,33;CL:0000393,8.42e-10,39;CL:0000211,8.42e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.21e-31!73;UBERON:0005743!1.21e-31!73;UBERON:0000073!5.19e-31!75;UBERON:0001016!5.19e-31!75;UBERON:0002346!3.92e-26!71;UBERON:0003075!3.92e-26!71;UBERON:0007284!3.92e-26!71;UBERON:0001049!8.73e-26!52;UBERON:0005068!8.73e-26!52;UBERON:0006241!8.73e-26!52;UBERON:0007135!8.73e-26!52;UBERON:0000955!2.77e-24!50;UBERON:0006238!2.77e-24!50;UBERON:0004121!3.14e-24!102;UBERON:0000924!3.14e-24!102;UBERON:0006601!3.14e-24!102;UBERON:0002616!1.01e-23!49;UBERON:0000033!2.71e-22!63;UBERON:0002020!6.84e-20!34;UBERON:0003056!6.00e-19!49;UBERON:0003080!8.57e-19!40;UBERON:0002780!2.47e-18!39;UBERON:0001890!2.47e-18!39;UBERON:0006240!2.47e-18!39;UBERON:0002791!1.19e-16!29;UBERON:0003528!1.19e-16!29;UBERON:0001893!1.19e-16!29;UBERON:0000956!2.11e-12!21;UBERON:0001869!2.11e-12!21;UBERON:0000203!2.11e-12!21;UBERON:0002619!2.38e-10!17;UBERON:0007811!2.33e-09!86;UBERON:0000153!1.41e-08!94;UBERON:0003076!1.53e-07!12;UBERON:0003057!1.53e-07!12;UBERON:0002021!2.19e-07!10;UBERON:0000411!2.19e-07!10;UBERON:0001950!2.19e-07!10;UBERON:0000991!2.28e-07!18;UBERON:0005564!2.28e-07!18;UBERON:0000473!4.09e-07!14;UBERON:0004176!4.84e-07!17;UBERON:0009196!4.84e-07!17;UBERON:0009117!4.84e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.18e-36,73;UBERON:0001016,2.71e-34,75;UBERON:0000073,5.80e-33,54;UBERON:0001049,4.08e-31,52;UBERON:0005068,4.08e-31,52;UBERON:0006241,4.08e-31,52;UBERON:0007135,4.08e-31,52;UBERON:0002346,3.17e-28,64;UBERON:0003075,3.17e-28,64;UBERON:0007284,3.17e-28,64;UBERON:0000955,9.36e-27,47;UBERON:0006238,9.36e-27,47;UBERON:0002020,3.96e-26,34;UBERON:0002616,4.98e-26,46;UBERON:0004121,1.77e-25,95;UBERON:0000924,1.77e-25,95;UBERON:0006601,1.77e-25,95;UBERON:0010371,4.11e-22,73;UBERON:0003080,6.60e-22,40;UBERON:0003528,8.85e-22,29;UBERON:0002791,8.85e-22,29;UBERON:0001893,8.85e-22,29;UBERON:0002780,2.67e-21,39;UBERON:0001890,2.67e-21,39;UBERON:0006240,2.67e-21,39;UBERON:0003056,3.72e-19,49;UBERON:0000956,4.43e-16,21;UBERON:0001869,4.43e-16,21;UBERON:0000203,4.43e-16,21;UBERON:0010314,3.58e-15,92;UBERON:0002619,2.48e-13,17;UBERON:0003076,1.42e-09,12;UBERON:0003057,1.42e-09,12;UBERON:0002021,2.27e-09,10;UBERON:0000411,2.27e-09,10;UBERON:0001950,2.27e-09,10;UBERON:0000473,1.23e-07,14;UBERON:0000991,1.59e-07,18;UBERON:0005564,1.59e-07,18;UBERON:0004176,4.28e-07,17;UBERON:0009196,4.28e-07,17;UBERON:0009117,4.28e-07,17;UBERON:0003135,7.53e-07,15;UBERON:0002420,7.62e-07,8;UBERON:0007245,7.62e-07,8;UBERON:0010009,7.62e-07,8;UBERON:0010011,7.62e-07,8;UBERON:0000454,7.62e-07,8|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0.157731082679119,0,0,6.97354979238772,0,0,0,0,0,0,0,0,0,0,1.27006134691926,3.69038872550742,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,1.56478268869608,8.93903141159831,6.59058548203415,7.58276606389705,3.21968769738334,7.18762821824858,0,0,0,0,0,0,11.9366711907163,11.6378015439847,13.3104594736298,3.04960078862219,1.77858959222228,0,0,0,5.39280198933128,13.831858991576,9.53944433237994,10.3954572515402,12.6194976810829,18.852964970651,11.7060326704355,9.92175473641128,9.00947427571422,13.7882817991503,8.8092704799511,15.3224805702225,12.4421291937557,9.10015385338338,12.3508318863253,11.4600941522487,12.2840519560608,10.1297269805702,8.09830713217094,13.258286346315,13.6676813567139,14.3527573285481,0.151452386666368,0.604572480854284,0,0,0,0,0,0,2.24711072210803,0,0,0,0.422530259330042,0,0,0,0,0,0,1.02765491747154,0,1.03909497345377,0.693941307064543,0.913396434936424,0,1.05505848386836,1.52865319276416,0.628332956648377,0,0.289198713839823,3.5384422077995,0.485300549842228,0.220841518460394,0,0,26.3502717310392,25.3430515244281,0,0,0,0,8.98743836428936,11.8950156732843,21.9895116197513,11.9938780932671,12.5300574091862,9.97382613885888,12.1680947300818,1.12023300235348,0.622034853050465,0,0.210441855886474,0.520481771850815,2.06911893990126,0.900310649026746,0.753524089178575,0.680364991513279,1.5373646434182,1.78033276663485,2.58703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0.43839146485515,0.556094498451196,0.348252166522167,0.411564272815887,3.78165106955137,0,0,0,0.207125772535502,0,0.36012412292203,0.473489471170421,0.393528463494808,0,0.232533944750408,0,0,0.329119699826961,0.32833492815819,0,0,0,0.134206418760372,8.62188789112922,11.216602749342,0,0,0.426576501070468,0.464473343720877,0.38660238396628,0.403367049246685,0,0.380451252225118,0,0.164698954724011,0,0.397912944082302,0.38992817423824,0,0,0,0.379335801906163,0.571242563048644,0,0,0,0.0701358198903186,0.126473074248515,0,0,0.246794327843601,0,0.166845105716094,0.196558995113203,0.224862112384854,0.405720242777006,0.482354319504834,0.50925170356284,0.863088412352432,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.757965647081939,0.162964976442026,0.169745085775188,0,0,0.476087281772027,0,0.315270288212382,0.221464689648775,0,0.163863314715738,0.345369963731791,0.433947175744535,0,0,0,0,9.79358598925531,9.25972324078405,0,0.252470927204373,0.94652465824877,2.34263246577983,3.23135096599198,0.238968797952552,0.445597348164788,0.566153061577665,0,2.92255857911312,1.58115111178609,10.9249247583414,1.13552068166615,0.534196811001766,1.14020871547503,0.824850614862677,0,0.485561272309963,0.906970670894253,0.188605079755898,0,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,1.70219802876894,0.900305470156551,0.776152102696527,0.857348140126369,1.06404140185364,1.96205699362278,2.13913726782757,2.43571959291679,1.40803024838226,0,0.441056796109924,0,0.161464426695906,0.180938774784468,0,0,0,8.71498919449395,0,0.412773735926445,0.555583582109135,0.565105371014073,0.27338845544205,0.457556346413045,0,0.139951452323658,0,0,0.316335993581135,0.406638934253697,0.216010681643603,0.627264888043406,0.218362563746178,0.539457385539283,0.661227645802687,0.26175594198403,0,0,32.694190443683,13.3069725979141,10.9202603701684,8.94475466382619,8.91202781996345,9.12363077650202,11.8530811032212,19.4004533417486,22.6496183959535,15.4613837328644,16.9937703692141,0,0.202725215290164,0.102710957164827,0,0,0,0.120195449519969,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0.965947970160952,0.750729901804728,0.73260649706906,0.428736758158132,0.501572104035363,16.942555278512,19.3336599333014,19.4784474569395,23.2001796163978,11.6464028361009,11.3309084608455,16.8755625057951,13.5096360967266,13.5942722695261,7.7664046762773,0.103787347584177,0,1.87806966329548,1.21553358534147,1.04806581313991,1.10306105070008,2.00022055021454,2.06035057238894,1.92551525755089,3.03236654116557,1.77435509923168,1.32038438970253,1.87283014939765,1.72867911493147,2.46972516509137,5.23923060411381,1.97003354106254,2.31491064556446,2.06042950401653,2.35518272215036,2.05721551431249,1.24233064311536,2.38436189947321,1.0174249164263,1.31753132581463,1.69229215783353,2.37806364734604,1.31534855718921,1.90125759384206,1.68342681497322,2.01679530811096,1.37906275325789,0.818462086339379,2.01417893541756,0.964533054905707,5.49583271463481,2.33931608445408,1.07435527024149,0.956441660344217,0.661774257358546,0.695603506861264|short_description=p2@Reep2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:225362 | |||
|HGNC= | |||
|MCL_coexpression_id=2234 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:C1IE02,uniprot:Q8VCD6 | |||
|association_with_transcript=11bp_to_NM_001204914,NM_144865_5end | |||
|cluster_id=chr18:35000254..35000268,+ | |||
|description=CAGE_peak_2_at_Reep2_5end | |||
|id=chr18:35000254..35000268,+ | |||
|ontology_enrichment_celltype=CL:0002319!7.19e-15!43;CL:0000221!1.13e-14!44;CL:0000133!1.13e-14!44;CL:0000117!1.71e-13!23;CL:0000337!1.71e-13!23;CL:0000540!2.23e-12!33;CL:0000047!2.23e-12!33;CL:0000031!2.23e-12!33;CL:0000404!2.23e-12!33;CL:0000055!8.63e-10!50;CL:0000393!6.16e-08!39;CL:0000211!6.16e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-17,23;CL:0000337,1.52e-17,23;CL:0002319,5.56e-16,43;CL:0000221,2.57e-15,44;CL:0000133,2.57e-15,44;CL:0000540,2.13e-13,33;CL:0000047,2.13e-13,33;CL:0000031,2.13e-13,33;CL:0000404,2.13e-13,33;CL:0000393,8.42e-10,39;CL:0000211,8.42e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.21e-31!73;UBERON:0005743!1.21e-31!73;UBERON:0000073!5.19e-31!75;UBERON:0001016!5.19e-31!75;UBERON:0002346!3.92e-26!71;UBERON:0003075!3.92e-26!71;UBERON:0007284!3.92e-26!71;UBERON:0001049!8.73e-26!52;UBERON:0005068!8.73e-26!52;UBERON:0006241!8.73e-26!52;UBERON:0007135!8.73e-26!52;UBERON:0000955!2.77e-24!50;UBERON:0006238!2.77e-24!50;UBERON:0004121!3.14e-24!102;UBERON:0000924!3.14e-24!102;UBERON:0006601!3.14e-24!102;UBERON:0002616!1.01e-23!49;UBERON:0000033!2.71e-22!63;UBERON:0002020!6.84e-20!34;UBERON:0003056!6.00e-19!49;UBERON:0003080!8.57e-19!40;UBERON:0002780!2.47e-18!39;UBERON:0001890!2.47e-18!39;UBERON:0006240!2.47e-18!39;UBERON:0002791!1.19e-16!29;UBERON:0003528!1.19e-16!29;UBERON:0001893!1.19e-16!29;UBERON:0000956!2.11e-12!21;UBERON:0001869!2.11e-12!21;UBERON:0000203!2.11e-12!21;UBERON:0002619!2.38e-10!17;UBERON:0007811!2.33e-09!86;UBERON:0000153!1.41e-08!94;UBERON:0003076!1.53e-07!12;UBERON:0003057!1.53e-07!12;UBERON:0002021!2.19e-07!10;UBERON:0000411!2.19e-07!10;UBERON:0001950!2.19e-07!10;UBERON:0000991!2.28e-07!18;UBERON:0005564!2.28e-07!18;UBERON:0000473!4.09e-07!14;UBERON:0004176!4.84e-07!17;UBERON:0009196!4.84e-07!17;UBERON:0009117!4.84e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.18e-36,73;UBERON:0001016,2.71e-34,75;UBERON:0000073,5.80e-33,54;UBERON:0001049,4.08e-31,52;UBERON:0005068,4.08e-31,52;UBERON:0006241,4.08e-31,52;UBERON:0007135,4.08e-31,52;UBERON:0002346,3.17e-28,64;UBERON:0003075,3.17e-28,64;UBERON:0007284,3.17e-28,64;UBERON:0000955,9.36e-27,47;UBERON:0006238,9.36e-27,47;UBERON:0002020,3.96e-26,34;UBERON:0002616,4.98e-26,46;UBERON:0004121,1.77e-25,95;UBERON:0000924,1.77e-25,95;UBERON:0006601,1.77e-25,95;UBERON:0010371,4.11e-22,73;UBERON:0003080,6.60e-22,40;UBERON:0003528,8.85e-22,29;UBERON:0002791,8.85e-22,29;UBERON:0001893,8.85e-22,29;UBERON:0002780,2.67e-21,39;UBERON:0001890,2.67e-21,39;UBERON:0006240,2.67e-21,39;UBERON:0003056,3.72e-19,49;UBERON:0000956,4.43e-16,21;UBERON:0001869,4.43e-16,21;UBERON:0000203,4.43e-16,21;UBERON:0010314,3.58e-15,92;UBERON:0002619,2.48e-13,17;UBERON:0003076,1.42e-09,12;UBERON:0003057,1.42e-09,12;UBERON:0002021,2.27e-09,10;UBERON:0000411,2.27e-09,10;UBERON:0001950,2.27e-09,10;UBERON:0000473,1.23e-07,14;UBERON:0000991,1.59e-07,18;UBERON:0005564,1.59e-07,18;UBERON:0004176,4.28e-07,17;UBERON:0009196,4.28e-07,17;UBERON:0009117,4.28e-07,17;UBERON:0003135,7.53e-07,15;UBERON:0002420,7.62e-07,8;UBERON:0007245,7.62e-07,8;UBERON:0010009,7.62e-07,8;UBERON:0010011,7.62e-07,8;UBERON:0000454,7.62e-07,8 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0.157731082679119,0,0,6.97354979238772,0,0,0,0,0,0,0,0,0,0,1.27006134691926,3.69038872550742,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,1.56478268869608,8.93903141159831,6.59058548203415,7.58276606389705,3.21968769738334,7.18762821824858,0,0,0,0,0,0,11.9366711907163,11.6378015439847,13.3104594736298,3.04960078862219,1.77858959222228,0,0,0,5.39280198933128,13.831858991576,9.53944433237994,10.3954572515402,12.6194976810829,18.852964970651,11.7060326704355,9.92175473641128,9.00947427571422,13.7882817991503,8.8092704799511,15.3224805702225,12.4421291937557,9.10015385338338,12.3508318863253,11.4600941522487,12.2840519560608,10.1297269805702,8.09830713217094,13.258286346315,13.6676813567139,14.3527573285481,0.151452386666368,0.604572480854284,0,0,0,0,0,0,2.24711072210803,0,0,0,0.422530259330042,0,0,0,0,0,0,1.02765491747154,0,1.03909497345377,0.693941307064543,0.913396434936424,0,1.05505848386836,1.52865319276416,0.628332956648377,0,0.289198713839823,3.5384422077995,0.485300549842228,0.220841518460394,0,0,26.3502717310392,25.3430515244281,0,0,0,0,8.98743836428936,11.8950156732843,21.9895116197513,11.9938780932671,12.5300574091862,9.97382613885888,12.1680947300818,1.12023300235348,0.622034853050465,0,0.210441855886474,0.520481771850815,2.06911893990126,0.900310649026746,0.753524089178575,0.680364991513279,1.5373646434182,1.78033276663485,2.58703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0.43839146485515,0.556094498451196,0.348252166522167,0.411564272815887,3.78165106955137,0,0,0,0.207125772535502,0,0.36012412292203,0.473489471170421,0.393528463494808,0,0.232533944750408,0,0,0.329119699826961,0.32833492815819,0,0,0,0.134206418760372,8.62188789112922,11.216602749342,0,0,0.426576501070468,0.464473343720877,0.38660238396628,0.403367049246685,0,0.380451252225118,0,0.164698954724011,0,0.397912944082302,0.38992817423824,0,0,0,0.379335801906163,0.571242563048644,0,0,0,0.0701358198903186,0.126473074248515,0,0,0.246794327843601,0,0.166845105716094,0.196558995113203,0.224862112384854,0.405720242777006,0.482354319504834,0.50925170356284,0.863088412352432,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.757965647081939,0.162964976442026,0.169745085775188,0,0,0.476087281772027,0,0.315270288212382,0.221464689648775,0,0.163863314715738,0.345369963731791,0.433947175744535,0,0,0,0,9.79358598925531,9.25972324078405,0,0.252470927204373,0.94652465824877,2.34263246577983,3.23135096599198,0.238968797952552,0.445597348164788,0.566153061577665,0,2.92255857911312,1.58115111178609,10.9249247583414,1.13552068166615,0.534196811001766,1.14020871547503,0.824850614862677,0,0.485561272309963,0.906970670894253,0.188605079755898,0,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,1.70219802876894,0.900305470156551,0.776152102696527,0.857348140126369,1.06404140185364,1.96205699362278,2.13913726782757,2.43571959291679,1.40803024838226,0,0.441056796109924,0,0.161464426695906,0.180938774784468,0,0,0,8.71498919449395,0,0.412773735926445,0.555583582109135,0.565105371014073,0.27338845544205,0.457556346413045,0,0.139951452323658,0,0,0.316335993581135,0.406638934253697,0.216010681643603,0.627264888043406,0.218362563746178,0.539457385539283,0.661227645802687,0.26175594198403,0,0,32.694190443683,13.3069725979141,10.9202603701684,8.94475466382619,8.91202781996345,9.12363077650202,11.8530811032212,19.4004533417486,22.6496183959535,15.4613837328644,16.9937703692141,0,0.202725215290164,0.102710957164827,0,0,0,0.120195449519969,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0.965947970160952,0.750729901804728,0.73260649706906,0.428736758158132,0.501572104035363,16.942555278512,19.3336599333014,19.4784474569395,23.2001796163978,11.6464028361009,11.3309084608455,16.8755625057951,13.5096360967266,13.5942722695261,7.7664046762773,0.103787347584177,0,1.87806966329548,1.21553358534147,1.04806581313991,1.10306105070008,2.00022055021454,2.06035057238894,1.92551525755089,3.03236654116557,1.77435509923168,1.32038438970253,1.87283014939765,1.72867911493147,2.46972516509137,5.23923060411381,1.97003354106254,2.31491064556446,2.06042950401653,2.35518272215036,2.05721551431249,1.24233064311536,2.38436189947321,1.0174249164263,1.31753132581463,1.69229215783353,2.37806364734604,1.31534855718921,1.90125759384206,1.68342681497322,2.01679530811096,1.37906275325789,0.818462086339379,2.01417893541756,0.964533054905707,5.49583271463481,2.33931608445408,1.07435527024149,0.956441660344217,0.661774257358546,0.695603506861264 | |||
|short_description=p2@Reep2 | |||
}} |
Revision as of 16:13, 5 August 2015
Short description: | p2@Reep2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Reep2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2234 |
Association with transcript: | 11bp_to_NM_001204914, NM_144865_5end |
EntrezGene: | 225362 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.52e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.52e-17 | 23 |
neural cell | 5.56e-16 | 43 |
ectodermal cell | 2.57e-15 | 44 |
neurectodermal cell | 2.57e-15 | 44 |
neuron | 2.13e-13 | 33 |
neuronal stem cell | 2.13e-13 | 33 |
neuroblast | 2.13e-13 | 33 |
electrically signaling cell | 2.13e-13 | 33 |
electrically responsive cell | 8.42e-10 | 39 |
electrically active cell | 8.42e-10 | 39 |