FFCP PHASE1:Mm9::chr17:6106880..6106907,+: Difference between revisions
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{{FFCP|EntrezGene=68842|HGNC=|UniProt=Q3UH13|association_with_transcript=0bp_to_ENSMUST00000149756_5end|description=CAGE_peak_2_at_Tulp4_5end|id=chr17:6106880..6106907,+|ontology_enrichment_celltype=CL:0000393!2.97e-18!39;CL:0000211!2.97e-18!39;CL:0000540!7.18e-15!33;CL:0000047!7.18e-15!33;CL:0000031!7.18e-15!33;CL:0000404!7.18e-15!33;CL:0002321!3.51e-14!70;CL:0000220!3.51e-14!70;CL:0000055!4.04e-14!50;CL:0000221!4.07e-12!44;CL:0000133!4.07e-12!44;CL:0002319!1.14e-11!43;CL:0000117!2.45e-11!23;CL:0000337!2.45e-11!23|ontology_enrichment_celltype_v019_2=CL:0000393,2.93e-18,39;CL:0000211,2.93e-18,39;CL:0000540,7.11e-15,33;CL:0000047,7.11e-15,33;CL:0000031,7.11e-15,33;CL:0000404,7.11e-15,33;CL:0002321,3.47e-14,70;CL:0000221,4.04e-12,44;CL:0000133,4.04e-12,44;CL:0002319,1.13e-11,43;CL:0000117,2.43e-11,23;CL:0000337,2.43e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!4.78e-17!102;UBERON:0000924!4.78e-17!102;UBERON:0006601!4.78e-17!102;UBERON:0000073!5.04e-17!75;UBERON:0001016!5.04e-17!75;UBERON:0001017!8.98e-16!73;UBERON:0005743!8.98e-16!73;UBERON:0000033!3.19e-12!63;UBERON:0001049!1.25e-10!52;UBERON:0005068!1.25e-10!52;UBERON:0006241!1.25e-10!52;UBERON:0007135!1.25e-10!52;UBERON:0000955!1.99e-10!50;UBERON:0006238!1.99e-10!50;UBERON:0002616!5.97e-10!49;UBERON:0002346!1.37e-09!71;UBERON:0003075!1.37e-09!71;UBERON:0007284!1.37e-09!71;UBERON:0002020!6.36e-09!34;UBERON:0003056!5.35e-08!49;UBERON:0002791!1.60e-07!29;UBERON:0003528!1.60e-07!29;UBERON:0001893!1.60e-07!29;UBERON:0003080!1.93e-07!40;UBERON:0002780!4.21e-07!39;UBERON:0001890!4.21e-07!39;UBERON:0006240!4.21e-07!39;UBERON:0004111!8.37e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.85e-20,95;UBERON:0000924,8.85e-20,95;UBERON:0006601,8.85e-20,95;UBERON:0001016,4.98e-17,75;UBERON:0001017,8.88e-16,73;UBERON:0010371,9.69e-14,73;UBERON:0002346,5.38e-12,64;UBERON:0003075,5.38e-12,64;UBERON:0007284,5.38e-12,64;UBERON:0000073,2.04e-11,54;UBERON:0001049,1.24e-10,52;UBERON:0005068,1.24e-10,52;UBERON:0006241,1.24e-10,52;UBERON:0007135,1.24e-10,52;UBERON:0010314,4.14e-10,92;UBERON:0000955,3.90e-09,47;UBERON:0006238,3.90e-09,47;UBERON:0002020,6.33e-09,34;UBERON:0002616,1.12e-08,46;UBERON:0003056,5.32e-08,49;UBERON:0003528,1.59e-07,29;UBERON:0002791,1.59e-07,29;UBERON:0001893,1.59e-07,29;UBERON:0003080,1.93e-07,40;UBERON:0002780,4.19e-07,39;UBERON:0001890,4.19e-07,39;UBERON:0006240,4.19e-07,39;UBERON:0004111,8.34e-07,122|phase1_expression=14.5735450865363,7.32848356042658,13.6499771816861,7.25914107136392,7.51343594919521,8.39396359559449,7.47560449905682,4.26106967357202,3.66050677594334,3.7450324211519,1.36974374580404,0.797721589953364,1.54080656938085,4.28359971853087,0.999329285446988,0.202475267389826,0,0.946386496074713,1.7824876368746,2.54633791078818,9.95006494767516,0.794327609607082,1.56719873483361,7.67963629408352,8.71755268055246,12.0588712464154,6.8921919385452,8.18790684206378,6.46079626151671,7.05684363327806,10.8647950221099,3.17515336729816,0,0,1.73310971850765,4.15586613396231,2.6542016314108,0,0.7813353445238,0.523523743973798,0,0,0,25.6829508670178,35.2791720643911,34.3232426542344,6.25913075478431,2.39827672018491,7.0299578475031,3.4997381833371,3.07970127575798,2.87505128729943,2.51673909086605,0.725362142011344,2.01656279485478,15.9500850342287,13.1805382371828,9.28209766099396,20.4339625468194,9.52183762689659,13.9442908771359,11.8595586224196,3.55717918444456,2.2497492932035,3.9554654502679,0.7104801149461,5.99200221036809,5.37905627450176,26.7519199755872,17.8207838597832,20.6118462124354,8.56952953211411,7.50953039235486,19.1085646775328,14.8560480078266,14.7075005857603,12.1127469099328,16.7270412891596,13.0565553267807,19.5191705840687,11.4359554503012,26.045668527838,12.8424179540635,10.6924895906019,10.3902808488231,11.490514833473,11.3897344639282,21.2495368240843,32.7137155199355,23.2004689527832,7.8263411949453,3.44169550792555,6.11974200336975,4.85732872474035,7.79731700937203,7.6164570806547,4.91555470461132,13.6344258062446,11.4305842025262,10.2468476607999,13.0984380392313,11.5493829672886,17.8363667794652,63.9960032837998,5.84525810730278,5.06719730950197,5.05524445014783,10.0481814152773,2.84831672011889,4.89859058913922,4.68410382268567,2.13125834818499,3.92046345335299,3.3158980921577,5.05631440683531,6.1576629751541,7.91023896749996,6.2177723475562,2.65383165584962,11.3236794963186,5.74187947997023,7.75800405016355,0,15.517382241612,29.3225389538837,3.57639877292028,0.11981512450592,0,0.254140454146129,11.5338792341713,10.0650132620098,17.2146462394624,12.6891753740362,14.3200656104985,11.2205544062162,12.0058534670141,7.02691610567182,5.22509276562391,4.54900965180614,7.99679052368601,6.37590170517248,5.0578462975364,6.66229880279792,6.0281927134286,14.0835553243249,12.5551445879153,10.6819965998091,6.98499100995342,5.82033580918674,7.37513712654495,9.32540958068929,5.47989331068937,5.00485048606076,5.2237824978325,5.76189981942242,4.77682240364384,0,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68842 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UH13 | |||
|association_with_transcript=0bp_to_ENSMUST00000149756_5end | |||
|cluster_id=chr17:6106880..6106907,+ | |||
|description=CAGE_peak_2_at_Tulp4_5end | |||
|id=chr17:6106880..6106907,+ | |||
|ontology_enrichment_celltype=CL:0000393!2.97e-18!39;CL:0000211!2.97e-18!39;CL:0000540!7.18e-15!33;CL:0000047!7.18e-15!33;CL:0000031!7.18e-15!33;CL:0000404!7.18e-15!33;CL:0002321!3.51e-14!70;CL:0000220!3.51e-14!70;CL:0000055!4.04e-14!50;CL:0000221!4.07e-12!44;CL:0000133!4.07e-12!44;CL:0002319!1.14e-11!43;CL:0000117!2.45e-11!23;CL:0000337!2.45e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.93e-18,39;CL:0000211,2.93e-18,39;CL:0000540,7.11e-15,33;CL:0000047,7.11e-15,33;CL:0000031,7.11e-15,33;CL:0000404,7.11e-15,33;CL:0002321,3.47e-14,70;CL:0000221,4.04e-12,44;CL:0000133,4.04e-12,44;CL:0002319,1.13e-11,43;CL:0000117,2.43e-11,23;CL:0000337,2.43e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.78e-17!102;UBERON:0000924!4.78e-17!102;UBERON:0006601!4.78e-17!102;UBERON:0000073!5.04e-17!75;UBERON:0001016!5.04e-17!75;UBERON:0001017!8.98e-16!73;UBERON:0005743!8.98e-16!73;UBERON:0000033!3.19e-12!63;UBERON:0001049!1.25e-10!52;UBERON:0005068!1.25e-10!52;UBERON:0006241!1.25e-10!52;UBERON:0007135!1.25e-10!52;UBERON:0000955!1.99e-10!50;UBERON:0006238!1.99e-10!50;UBERON:0002616!5.97e-10!49;UBERON:0002346!1.37e-09!71;UBERON:0003075!1.37e-09!71;UBERON:0007284!1.37e-09!71;UBERON:0002020!6.36e-09!34;UBERON:0003056!5.35e-08!49;UBERON:0002791!1.60e-07!29;UBERON:0003528!1.60e-07!29;UBERON:0001893!1.60e-07!29;UBERON:0003080!1.93e-07!40;UBERON:0002780!4.21e-07!39;UBERON:0001890!4.21e-07!39;UBERON:0006240!4.21e-07!39;UBERON:0004111!8.37e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.85e-20,95;UBERON:0000924,8.85e-20,95;UBERON:0006601,8.85e-20,95;UBERON:0001016,4.98e-17,75;UBERON:0001017,8.88e-16,73;UBERON:0010371,9.69e-14,73;UBERON:0002346,5.38e-12,64;UBERON:0003075,5.38e-12,64;UBERON:0007284,5.38e-12,64;UBERON:0000073,2.04e-11,54;UBERON:0001049,1.24e-10,52;UBERON:0005068,1.24e-10,52;UBERON:0006241,1.24e-10,52;UBERON:0007135,1.24e-10,52;UBERON:0010314,4.14e-10,92;UBERON:0000955,3.90e-09,47;UBERON:0006238,3.90e-09,47;UBERON:0002020,6.33e-09,34;UBERON:0002616,1.12e-08,46;UBERON:0003056,5.32e-08,49;UBERON:0003528,1.59e-07,29;UBERON:0002791,1.59e-07,29;UBERON:0001893,1.59e-07,29;UBERON:0003080,1.93e-07,40;UBERON:0002780,4.19e-07,39;UBERON:0001890,4.19e-07,39;UBERON:0006240,4.19e-07,39;UBERON:0004111,8.34e-07,122 | |||
|phase1_expression=14.5735450865363,7.32848356042658,13.6499771816861,7.25914107136392,7.51343594919521,8.39396359559449,7.47560449905682,4.26106967357202,3.66050677594334,3.7450324211519,1.36974374580404,0.797721589953364,1.54080656938085,4.28359971853087,0.999329285446988,0.202475267389826,0,0.946386496074713,1.7824876368746,2.54633791078818,9.95006494767516,0.794327609607082,1.56719873483361,7.67963629408352,8.71755268055246,12.0588712464154,6.8921919385452,8.18790684206378,6.46079626151671,7.05684363327806,10.8647950221099,3.17515336729816,0,0,1.73310971850765,4.15586613396231,2.6542016314108,0,0.7813353445238,0.523523743973798,0,0,0,25.6829508670178,35.2791720643911,34.3232426542344,6.25913075478431,2.39827672018491,7.0299578475031,3.4997381833371,3.07970127575798,2.87505128729943,2.51673909086605,0.725362142011344,2.01656279485478,15.9500850342287,13.1805382371828,9.28209766099396,20.4339625468194,9.52183762689659,13.9442908771359,11.8595586224196,3.55717918444456,2.2497492932035,3.9554654502679,0.7104801149461,5.99200221036809,5.37905627450176,26.7519199755872,17.8207838597832,20.6118462124354,8.56952953211411,7.50953039235486,19.1085646775328,14.8560480078266,14.7075005857603,12.1127469099328,16.7270412891596,13.0565553267807,19.5191705840687,11.4359554503012,26.045668527838,12.8424179540635,10.6924895906019,10.3902808488231,11.490514833473,11.3897344639282,21.2495368240843,32.7137155199355,23.2004689527832,7.8263411949453,3.44169550792555,6.11974200336975,4.85732872474035,7.79731700937203,7.6164570806547,4.91555470461132,13.6344258062446,11.4305842025262,10.2468476607999,13.0984380392313,11.5493829672886,17.8363667794652,63.9960032837998,5.84525810730278,5.06719730950197,5.05524445014783,10.0481814152773,2.84831672011889,4.89859058913922,4.68410382268567,2.13125834818499,3.92046345335299,3.3158980921577,5.05631440683531,6.1576629751541,7.91023896749996,6.2177723475562,2.65383165584962,11.3236794963186,5.74187947997023,7.75800405016355,0,15.517382241612,29.3225389538837,3.57639877292028,0.11981512450592,0,0.254140454146129,11.5338792341713,10.0650132620098,17.2146462394624,12.6891753740362,14.3200656104985,11.2205544062162,12.0058534670141,7.02691610567182,5.22509276562391,4.54900965180614,7.99679052368601,6.37590170517248,5.0578462975364,6.66229880279792,6.0281927134286,14.0835553243249,12.5551445879153,10.6819965998091,6.98499100995342,5.82033580918674,7.37513712654495,9.32540958068929,5.47989331068937,5.00485048606076,5.2237824978325,5.76189981942242,4.77682240364384,0,0,0,5.17814431338755,4.69052119962192,3.24111710629827,5.68187365404505,3.14822770795846,4.47374627373397,5.8133486187602,3.21928081679543,8.4071046504362,8.06343264576054,10.6708851651412,11.3496333364198,9.0643992203706,2.63460138349261,7.1129401942997,10.7247873767705,21.5070639872704,6.93879444265976,4.23120906661671,3.19932375802851,3.48355007790658,5.41243337552792,7.86565746031036,6.0042071838115,6.46767128782701,10.4396393539793,5.10566759644434,8.04272668160862,7.75930240960488,6.82374304916921,5.39291645192533,7.3486936957396,5.57595565112228,3.79335801906163,3.08470984046268,2.25415471346161,3.46207257337034,4.46090720485539,7.5746685481544,7.52514791778662,7.23289725100051,8.47793130343424,5.92306386824642,8.30067355844017,1.33476084572875,2.16214894624523,1.79889689907883,1.21716072833102,1.20588579876208,1.2731292589071,1.15078454980324,3.56697498905078,1.64736847912849,1.43768206527355,1.86070473834252,5.30464044294753,5.30415643688935,3.76734568396016,5.30687873499704,7.57488079683079,3.03186258832776,4.4000543639347,3.56464680127895,4.22442446919304,5.3602002381381,3.33261097240419,9.36641509717434,11.0344600874334,11.9590932410338,13.7131101045439,8.52089236521838,10.1884139300878,12.2951699794285,10.5553898757491,8.70249094109935,4.42587845717133,5.79467167239938,15.2523060488402,21.2153152731888,13.6066004662641,13.8859009962405,6.94118082715765,11.7131623288992,13.5716740571663,8.36390792833932,10.6943363559549,11.3230612315533,15.382806663646,14.3205370376543,15.0209355619679,15.1021018718249,6.81312408999689,3.20518086601059,8.1443479676788,6.10389454998381,7.96470830039777,4.85561272309963,3.32555912661226,4.14931175462976,3.2483208216885,3.3817866273832,5.16856586336442,6.5436071305951,2.49548164869305,11.0612865277536,4.21674434299995,5.15677716240934,9.53230896110606,3.96134406868882,4.01011919726539,4.71541477069503,8.86701168211368,7.49149033928696,8.55654907131029,4.56697423671899,4.69343416127421,11.0152676849186,7.93902232997863,11.5420377059036,11.4639742954093,10.2531972377865,8.23669173621642,8.86360858623331,6.12109756922687,21.6947603352296,0.512612642393558,3.09580301944834,1.66675074632741,1.31857919903284,1.6403307326523,1.37266903923914,0.169978429993855,0.139951452323658,0,6.68269432610579,4.11236791655476,4.67634774391752,6.26430976766447,3.55450103224597,6.33251434863915,6.74321731924104,7.43881101528023,4.4498510137285,4.14767914533737,8.07741107013003,11.2738587736838,4.63501292736334,2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| |||
|short_description=p2@Tulp4 | |||
}} |
Revision as of 05:17, 5 August 2015
Short description: | p2@Tulp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tulp4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000149756_5end |
EntrezGene: | 68842 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.93e-18 | 39 |
electrically active cell | 2.93e-18 | 39 |
neuron | 7.11e-15 | 33 |
neuronal stem cell | 7.11e-15 | 33 |
neuroblast | 7.11e-15 | 33 |
electrically signaling cell | 7.11e-15 | 33 |
embryonic cell | 3.47e-14 | 70 |
ectodermal cell | 4.04e-12 | 44 |
neurectodermal cell | 4.04e-12 | 44 |
neural cell | 1.13e-11 | 43 |
CNS neuron (sensu Vertebrata) | 2.43e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.43e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.85e-20 | 95 |
ectoderm | 8.85e-20 | 95 |
presumptive ectoderm | 8.85e-20 | 95 |
nervous system | 4.98e-17 | 75 |
central nervous system | 8.88e-16 | 73 |
ecto-epithelium | 9.69e-14 | 73 |
neurectoderm | 5.38e-12 | 64 |
neural plate | 5.38e-12 | 64 |
presumptive neural plate | 5.38e-12 | 64 |
regional part of nervous system | 2.04e-11 | 54 |
neural tube | 1.24e-10 | 52 |
neural rod | 1.24e-10 | 52 |
future spinal cord | 1.24e-10 | 52 |
neural keel | 1.24e-10 | 52 |
structure with developmental contribution from neural crest | 4.14e-10 | 92 |
brain | 3.90e-09 | 47 |
future brain | 3.90e-09 | 47 |
gray matter | 6.33e-09 | 34 |
regional part of brain | 1.12e-08 | 46 |
pre-chordal neural plate | 5.32e-08 | 49 |
brain grey matter | 1.59e-07 | 29 |
regional part of telencephalon | 1.59e-07 | 29 |
telencephalon | 1.59e-07 | 29 |
anterior neural tube | 1.93e-07 | 40 |
regional part of forebrain | 4.19e-07 | 39 |
forebrain | 4.19e-07 | 39 |
future forebrain | 4.19e-07 | 39 |
anatomical conduit | 8.34e-07 | 122 |