FFCP PHASE1:Mm9::chr2:35992122..35992145,-: Difference between revisions
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{{FFCP|EntrezGene=67889|HGNC=|UniProt=B0R043,D6REF9|association_with_transcript=0bp_to_ENSMUST00000122456,ENSMUST00000134668,ENSMUST00000142809_5end|description=CAGE_peak_1_at_Rbm18_5end|id=chr2:35992122..35992145,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.32e-11!49;UBERON:0000033!1.90e-11!63;UBERON:0004121!1.04e-10!102;UBERON:0000924!1.04e-10!102;UBERON:0006601!1.04e-10!102;UBERON:0002346!2.75e-10!71;UBERON:0003075!2.75e-10!71;UBERON:0007284!2.75e-10!71;UBERON:0000073!1.12e-09!75;UBERON:0001016!1.12e-09!75;UBERON:0003080!4.94e-09!40;UBERON:0001017!5.59e-09!73;UBERON:0005743!5.59e-09!73;UBERON:0000955!6.34e-09!50;UBERON:0006238!6.34e-09!50;UBERON:0000956!8.71e-09!21;UBERON:0001869!8.71e-09!21;UBERON:0000203!8.71e-09!21;UBERON:0002791!9.95e-09!29;UBERON:0003528!9.95e-09!29;UBERON:0001893!9.95e-09!29;UBERON:0002780!1.18e-08!39;UBERON:0001890!1.18e-08!39;UBERON:0006240!1.18e-08!39;UBERON:0001049!1.26e-08!52;UBERON:0005068!1.26e-08!52;UBERON:0006241!1.26e-08!52;UBERON:0007135!1.26e-08!52;UBERON:0002616!2.06e-08!49;UBERON:0002020!2.43e-08!34;UBERON:0000153!9.36e-08!94;UBERON:0002021!3.98e-07!10;UBERON:0000411!3.98e-07!10;UBERON:0001950!3.98e-07!10;UBERON:0002619!4.53e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.45e-13,92;UBERON:0002346,4.86e-12,64;UBERON:0003075,4.86e-12,64;UBERON:0007284,4.86e-12,64;UBERON:0004121,5.01e-12,95;UBERON:0000924,5.01e-12,95;UBERON:0006601,5.01e-12,95;UBERON:0003056,1.32e-11,49;UBERON:0010371,1.39e-11,73;UBERON:0001016,1.12e-09,75;UBERON:0003080,4.94e-09,40;UBERON:0001017,5.59e-09,73;UBERON:0000955,5.77e-09,47;UBERON:0006238,5.77e-09,47;UBERON:0000956,8.71e-09,21;UBERON:0001869,8.71e-09,21;UBERON:0000203,8.71e-09,21;UBERON:0003528,9.95e-09,29;UBERON:0002791,9.95e-09,29;UBERON:0001893,9.95e-09,29;UBERON:0002780,1.18e-08,39;UBERON:0001890,1.18e-08,39;UBERON:0006240,1.18e-08,39;UBERON:0001049,1.26e-08,52;UBERON:0005068,1.26e-08,52;UBERON:0006241,1.26e-08,52;UBERON:0007135,1.26e-08,52;UBERON:0002616,1.91e-08,46;UBERON:0000073,2.42e-08,54;UBERON:0002020,2.43e-08,34;UBERON:0002021,3.98e-07,10;UBERON:0000411,3.98e-07,10;UBERON:0001950,3.98e-07,10;UBERON:0002619,4.53e-07,17|phase1_expression=26.1042620780814,14.6569671208532,11.3749809847384,13.9133537201142,9.01612313903425,13.4303417529512,14.7175963575181,19.7558684865612,17.5985902689583,16.1504523162175,24.3129514880217,20.2621283848154,24.4817043801624,21.7676802023304,13.6575002344422,14.9831697868471,15.3903613188192,16.8772258466657,16.0423887318714,10.1853516431527,14.7124891961351,14.0000241193248,15.4107875591972,12.3194165550923,12.6175104586944,14.3557991028755,10.7690499039769,11.4199753323521,10.2612646506442,12.3494763582366,11.3082560434205,9.52546010189447,10.4561013889377,0,8.95440021228951,9.47537478543406,10.4126371693808,25.1118978442145,21.0960543021426,23.5585684788209,29.4115744015507,24.589637458504,30.5871522409627,18.5068322424099,18.1464706882931,19.6395024812999,4.69434806608824,6.75877984779384,5.93152693383074,11.665793944457,9.37909024889929,7.18762821824858,18.2883040602933,22.4862264023517,24.8709411365423,17.4936416504444,18.3381401560804,21.1425557833751,24.2779753031517,24.3335850465135,19.0149421051854,5.08266798103698,7.11435836888911,1.7997994345628,4.94433181283487,1.4209602298922,4.79360176829448,7.30014780110954,33.9065032248722,23.8960510847092,32.6003690094642,15.996455126613,15.0190607847097,36.7472397644862,31.7248509070362,27.5765635983006,24.2254938198655,22.8560335172486,19.9688493233117,25.0583946687368,27.9952189423374,27.0874952689515,14.7966989470732,15.757353080887,19.0997809721013,26.5165726926301,24.915044139843,31.8743052361264,43.3911087799145,25.014186395346,21.1601076752225,19.7897491705719,10.1995700056163,11.873470216032,10.3964226791627,15.2329141613094,17.6959969366007,19.7699174190547,13.768658243952,13.4269038313929,21.2673563862788,26.9485602570067,35.6727335589304,14.2213340630666,17.9687564039308,16.9751109868316,16.1767822404731,12.9027784082538,21.7507822263624,19.2974780784272,15.9606500624845,16.1366703505435,18.6798552777407,19.1417753501831,23.9880962556838,18.8499886994513,28.427421289453,19.0871151134283,28.307537662396,22.1620584427951,19.654895142975,19.8798853785441,24.2309289583559,28.6925181071316,32.673686262899,13.5392239260553,13.0598485711453,16.197373736822,14.9942867946216,29.3589653233452,34.7700458142156,50.8900126057101,40.1534179644159,40.6587577155226,27.6358099264215,34.5573890334324,29.1260580611905,17.9146037678534,26.0304441186685,21.2546274445339,21.2096322029207,29.4274693674845,28.0896922496345,31.0451924741573,31.5689356062161,34.975045637764,29.6097449608743,25.6116337031625,23.4969112296798,30.0678667466833,29.9116911078713,23.2347476373229,27.8047249225598,29.253181987862,20.1666493679785,24.4812148186747,15.4486901208912,15.1835265197682,12.2190304740105,21.3339545711567,20.8728193383176,18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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:67889 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B0R043,uniprot:D6REF9 | |||
|association_with_transcript=0bp_to_ENSMUST00000122456,ENSMUST00000134668,ENSMUST00000142809_5end | |||
|cluster_id=chr2:35992122..35992145,- | |||
|description=CAGE_peak_1_at_Rbm18_5end | |||
|id=chr2:35992122..35992145,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.32e-11!49;UBERON:0000033!1.90e-11!63;UBERON:0004121!1.04e-10!102;UBERON:0000924!1.04e-10!102;UBERON:0006601!1.04e-10!102;UBERON:0002346!2.75e-10!71;UBERON:0003075!2.75e-10!71;UBERON:0007284!2.75e-10!71;UBERON:0000073!1.12e-09!75;UBERON:0001016!1.12e-09!75;UBERON:0003080!4.94e-09!40;UBERON:0001017!5.59e-09!73;UBERON:0005743!5.59e-09!73;UBERON:0000955!6.34e-09!50;UBERON:0006238!6.34e-09!50;UBERON:0000956!8.71e-09!21;UBERON:0001869!8.71e-09!21;UBERON:0000203!8.71e-09!21;UBERON:0002791!9.95e-09!29;UBERON:0003528!9.95e-09!29;UBERON:0001893!9.95e-09!29;UBERON:0002780!1.18e-08!39;UBERON:0001890!1.18e-08!39;UBERON:0006240!1.18e-08!39;UBERON:0001049!1.26e-08!52;UBERON:0005068!1.26e-08!52;UBERON:0006241!1.26e-08!52;UBERON:0007135!1.26e-08!52;UBERON:0002616!2.06e-08!49;UBERON:0002020!2.43e-08!34;UBERON:0000153!9.36e-08!94;UBERON:0002021!3.98e-07!10;UBERON:0000411!3.98e-07!10;UBERON:0001950!3.98e-07!10;UBERON:0002619!4.53e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.45e-13,92;UBERON:0002346,4.86e-12,64;UBERON:0003075,4.86e-12,64;UBERON:0007284,4.86e-12,64;UBERON:0004121,5.01e-12,95;UBERON:0000924,5.01e-12,95;UBERON:0006601,5.01e-12,95;UBERON:0003056,1.32e-11,49;UBERON:0010371,1.39e-11,73;UBERON:0001016,1.12e-09,75;UBERON:0003080,4.94e-09,40;UBERON:0001017,5.59e-09,73;UBERON:0000955,5.77e-09,47;UBERON:0006238,5.77e-09,47;UBERON:0000956,8.71e-09,21;UBERON:0001869,8.71e-09,21;UBERON:0000203,8.71e-09,21;UBERON:0003528,9.95e-09,29;UBERON:0002791,9.95e-09,29;UBERON:0001893,9.95e-09,29;UBERON:0002780,1.18e-08,39;UBERON:0001890,1.18e-08,39;UBERON:0006240,1.18e-08,39;UBERON:0001049,1.26e-08,52;UBERON:0005068,1.26e-08,52;UBERON:0006241,1.26e-08,52;UBERON:0007135,1.26e-08,52;UBERON:0002616,1.91e-08,46;UBERON:0000073,2.42e-08,54;UBERON:0002020,2.43e-08,34;UBERON:0002021,3.98e-07,10;UBERON:0000411,3.98e-07,10;UBERON:0001950,3.98e-07,10;UBERON:0002619,4.53e-07,17 | |||
|phase1_expression=26.1042620780814,14.6569671208532,11.3749809847384,13.9133537201142,9.01612313903425,13.4303417529512,14.7175963575181,19.7558684865612,17.5985902689583,16.1504523162175,24.3129514880217,20.2621283848154,24.4817043801624,21.7676802023304,13.6575002344422,14.9831697868471,15.3903613188192,16.8772258466657,16.0423887318714,10.1853516431527,14.7124891961351,14.0000241193248,15.4107875591972,12.3194165550923,12.6175104586944,14.3557991028755,10.7690499039769,11.4199753323521,10.2612646506442,12.3494763582366,11.3082560434205,9.52546010189447,10.4561013889377,0,8.95440021228951,9.47537478543406,10.4126371693808,25.1118978442145,21.0960543021426,23.5585684788209,29.4115744015507,24.589637458504,30.5871522409627,18.5068322424099,18.1464706882931,19.6395024812999,4.69434806608824,6.75877984779384,5.93152693383074,11.665793944457,9.37909024889929,7.18762821824858,18.2883040602933,22.4862264023517,24.8709411365423,17.4936416504444,18.3381401560804,21.1425557833751,24.2779753031517,24.3335850465135,19.0149421051854,5.08266798103698,7.11435836888911,1.7997994345628,4.94433181283487,1.4209602298922,4.79360176829448,7.30014780110954,33.9065032248722,23.8960510847092,32.6003690094642,15.996455126613,15.0190607847097,36.7472397644862,31.7248509070362,27.5765635983006,24.2254938198655,22.8560335172486,19.9688493233117,25.0583946687368,27.9952189423374,27.0874952689515,14.7966989470732,15.757353080887,19.0997809721013,26.5165726926301,24.915044139843,31.8743052361264,43.3911087799145,25.014186395346,21.1601076752225,19.7897491705719,10.1995700056163,11.873470216032,10.3964226791627,15.2329141613094,17.6959969366007,19.7699174190547,13.768658243952,13.4269038313929,21.2673563862788,26.9485602570067,35.6727335589304,14.2213340630666,17.9687564039308,16.9751109868316,16.1767822404731,12.9027784082538,21.7507822263624,19.2974780784272,15.9606500624845,16.1366703505435,18.6798552777407,19.1417753501831,23.9880962556838,18.8499886994513,28.427421289453,19.0871151134283,28.307537662396,22.1620584427951,19.654895142975,19.8798853785441,24.2309289583559,28.6925181071316,32.673686262899,13.5392239260553,13.0598485711453,16.197373736822,14.9942867946216,29.3589653233452,34.7700458142156,50.8900126057101,40.1534179644159,40.6587577155226,27.6358099264215,34.5573890334324,29.1260580611905,17.9146037678534,26.0304441186685,21.2546274445339,21.2096322029207,29.4274693674845,28.0896922496345,31.0451924741573,31.5689356062161,34.975045637764,29.6097449608743,25.6116337031625,23.4969112296798,30.0678667466833,29.9116911078713,23.2347476373229,27.8047249225598,29.253181987862,20.1666493679785,24.4812148186747,15.4486901208912,15.1835265197682,12.2190304740105,21.3339545711567,20.8728193383176,18.3663302690235,29.5930919481513,22.8246508826988,23.4486011588815,28.8342091490506,28.9735273511589,32.9278265475418,23.6966183875412,33.6543301362145,32.7517990565257,30.4095973844691,28.1024147572545,31.5385084086874,36.8007409987223,47.4390263068501,16.1905203662061,11.6358249331959,22.6085545567348,18.5789337488351,21.5208660407896,16.5380490191141,14.4545728499166,14.6473732106671,17.5575752771469,18.4462829290892,16.5881237808178,18.3039954277859,18.1316601020782,13.4822911298133,13.400559092231,16.7278669533668,17.0701110857774,21.0217263201901,24.7957018480777,19.5505274731502,20.5589636397683,22.6538698245729,19.6033265085198,19.1893192373483,18.3688511574409,16.1650284737559,16.3048944897932,16.1839752544611,18.8696635308675,17.7641068784034,15.4173692255262,17.6059326619264,14.0044218479781,17.8371605219503,17.8348749452539,18.3956146836015,11.5014565221884,18.2349064357567,13.1055822708115,14.6495749209325,13.2754086006215,12.5435315554475,20.8771104888263,23.6864264713106,25.5855013013981,19.5206848641466,27.6934492980432,26.6334949332487,30.2315423925237,26.147908812945,24.4334473364596,29.8977331025846,27.1073106717728,20.3190510247515,21.4129377513711,21.1187625529007,13.5712155545345,13.053736411649,15.2446924635901,19.8674457339407,27.2936002979246,22.1530087659264,22.2951525712279,31.811336827751,24.609641114468,25.7689571235781,32.5289330576526,24.3748173911603,26.2902435417225,23.4953520554731,28.7415598189175,24.2572362066389,33.994748903401,37.5945940213514,21.4329528664486,14.6013795007149,28.1794439681687,19.1365342648141,21.2392221343941,20.6363540731734,15.7208249621671,18.483297816078,17.4228116799656,24.5948118355142,26.1012576099903,23.2661586865604,17.1118741624666,26.2310509086727,21.0837217149998,24.7525303795648,24.5116516142727,20.5269647195694,13.9707378485375,20.1476812929697,32.2759225228938,18.9070946658195,24.517804069716,21.6170113871366,23.9365142224985,32.4103068421645,16.9806866502321,20.4458953647435,28.9021323785671,20.6270203254293,19.3383197285081,24.7852758615042,15.7399651780119,27.4429446975554,12.3027034174454,23.1153292118809,17.2230910453832,16.3880557594081,12.1657862671712,11.8964650067392,21.9272174692073,21.692475110167,22.3883957563167,22.9120948323627,22.4598555442606,23.3817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| |||
|short_description=p1@Rbm18 | |||
}} |
Revision as of 03:21, 5 August 2015
Short description: | p1@Rbm18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rbm18_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000122456, ENSMUST00000134668, ENSMUST00000142809_5end |
EntrezGene: | 67889 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.45e-13 | 92 |
neurectoderm | 4.86e-12 | 64 |
neural plate | 4.86e-12 | 64 |
presumptive neural plate | 4.86e-12 | 64 |
ectoderm-derived structure | 5.01e-12 | 95 |
ectoderm | 5.01e-12 | 95 |
presumptive ectoderm | 5.01e-12 | 95 |
pre-chordal neural plate | 1.32e-11 | 49 |
ecto-epithelium | 1.39e-11 | 73 |
nervous system | 1.12e-09 | 75 |
anterior neural tube | 4.94e-09 | 40 |
central nervous system | 5.59e-09 | 73 |
brain | 5.77e-09 | 47 |
future brain | 5.77e-09 | 47 |
cerebral cortex | 8.71e-09 | 21 |
cerebral hemisphere | 8.71e-09 | 21 |
pallium | 8.71e-09 | 21 |
brain grey matter | 9.95e-09 | 29 |
regional part of telencephalon | 9.95e-09 | 29 |
telencephalon | 9.95e-09 | 29 |
regional part of forebrain | 1.18e-08 | 39 |
forebrain | 1.18e-08 | 39 |
future forebrain | 1.18e-08 | 39 |
neural tube | 1.26e-08 | 52 |
neural rod | 1.26e-08 | 52 |
future spinal cord | 1.26e-08 | 52 |
neural keel | 1.26e-08 | 52 |
regional part of brain | 1.91e-08 | 46 |
regional part of nervous system | 2.42e-08 | 54 |
gray matter | 2.43e-08 | 34 |
occipital lobe | 3.98e-07 | 10 |
visual cortex | 3.98e-07 | 10 |
neocortex | 3.98e-07 | 10 |
regional part of cerebral cortex | 4.53e-07 | 17 |