FFCP PHASE1:Mm9::chr2:32143542..32143562,-: Difference between revisions
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{{FFCP|EntrezGene=72931|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000127131_5end|description=CAGE_peak_1_at_Swi5_5end|id=chr2:32143542..32143562,-|ontology_enrichment_celltype=CL:0000055!5.62e-20!50;CL:0000221!2.28e-18!44;CL:0000133!2.28e-18!44;CL:0002319!3.05e-18!43;CL:0000393!2.23e-14!39;CL:0000211!2.23e-14!39;CL:0000540!1.18e-12!33;CL:0000047!1.18e-12!33;CL:0000031!1.18e-12!33;CL:0000404!1.18e-12!33;CL:0002321!2.66e-12!70;CL:0000220!2.66e-12!70;CL:0000117!9.85e-10!23;CL:0000337!9.85e-10!23;CL:0002453!9.18e-07!8;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,2.28e-18,44;CL:0000133,2.28e-18,44;CL:0002319,3.05e-18,43;CL:0000393,2.23e-14,39;CL:0000211,2.23e-14,39;CL:0000540,1.18e-12,33;CL:0000047,1.18e-12,33;CL:0000031,1.18e-12,33;CL:0000404,1.18e-12,33;CL:0002321,2.66e-12,70;CL:0000117,9.85e-10,23;CL:0000337,9.85e-10,23;CL:0002453,9.18e-07,8;CL:0000333,9.97e-07,10;CL:0000095,9.97e-07,10;CL:0000243,9.97e-07,10;CL:0000123,9.97e-07,10;CL:0000125,9.97e-07,10;CL:0000030,9.97e-07,10;CL:0000339,9.97e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.67e-15!75;UBERON:0001016!1.67e-15!75;UBERON:0001017!4.04e-15!73;UBERON:0005743!4.04e-15!73;UBERON:0004121!6.78e-14!102;UBERON:0000924!6.78e-14!102;UBERON:0006601!6.78e-14!102;UBERON:0002346!5.16e-09!71;UBERON:0003075!5.16e-09!71;UBERON:0007284!5.16e-09!71;UBERON:0002020!8.50e-09!34;UBERON:0001049!3.85e-08!52;UBERON:0005068!3.85e-08!52;UBERON:0006241!3.85e-08!52;UBERON:0007135!3.85e-08!52;UBERON:0004111!4.95e-08!122;UBERON:0002780!6.91e-08!39;UBERON:0001890!6.91e-08!39;UBERON:0006240!6.91e-08!39;UBERON:0003080!1.12e-07!40;UBERON:0002616!1.14e-07!49;UBERON:0000033!1.54e-07!63;UBERON:0000955!2.38e-07!50;UBERON:0006238!2.38e-07!50;UBERON:0002791!2.46e-07!29;UBERON:0003528!2.46e-07!29;UBERON:0001893!2.46e-07!29;UBERON:0000025!2.77e-07!114;UBERON:0003056!3.09e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.67e-15,75;UBERON:0001017,4.04e-15,73;UBERON:0004121,1.07e-13,95;UBERON:0000924,1.07e-13,95;UBERON:0006601,1.07e-13,95;UBERON:0010314,5.57e-12,92;UBERON:0000073,4.41e-09,54;UBERON:0002346,6.30e-09,64;UBERON:0003075,6.30e-09,64;UBERON:0007284,6.30e-09,64;UBERON:0002020,8.50e-09,34;UBERON:0010371,2.37e-08,73;UBERON:0001049,3.85e-08,52;UBERON:0005068,3.85e-08,52;UBERON:0006241,3.85e-08,52;UBERON:0007135,3.85e-08,52;UBERON:0004111,4.95e-08,122;UBERON:0002780,6.91e-08,39;UBERON:0001890,6.91e-08,39;UBERON:0006240,6.91e-08,39;UBERON:0003080,1.12e-07,40;UBERON:0003528,2.46e-07,29;UBERON:0002791,2.46e-07,29;UBERON:0001893,2.46e-07,29;UBERON:0000025,2.77e-07,114;UBERON:0003056,3.09e-07,49;UBERON:0002616,4.02e-07,46;UBERON:0000955,8.26e-07,47;UBERON:0006238,8.26e-07,47|phase1_expression=154.863935150336,76.7745896806594,70.0698828659885,40.5302043151152,40.5725541256541,86.6257043065351,106.994589392751,66.3693882489702,21.2590970449017,26.2152269480633,89.0333434772626,71.3163101418308,64.885076643927,62.9426897416781,101.598477353777,85.4445628385066,85.3465491316339,70.8212561229244,71.1623910413784,73.8437994128573,116.509307506966,127.191708488334,158.548272007334,124.154120087684,130.075062365085,119.440248535924,122.336406909177,118.293706744553,119.524730838059,117.950100727648,173.614989843104,55.2476685909879,65.1968674839644,63.3926724061755,125.650454591804,144.125437525813,119.643242769748,92.4954903928566,150.01638614857,118.316366138078,84.117102788435,90.1620040145148,95.1600291941061,159.007681103154,159.972797464394,174.552961305759,406.061107716632,386.994652575293,236.602018805026,245.56496253082,270.4537665802,324.880795464836,86.9113899379074,76.1630249111912,78.3098552001941,206.064808264794,150.716589407786,179.45388811255,207.981321763667,224.292175211342,216.136508595607,292.422831175661,258.784785668342,241.173124231415,302.593106945494,257.904281725434,260.352496040494,357.323023949046,157.504521096578,171.997565434574,179.196867071377,216.809097162487,244.501474833436,171.977082097795,179.710258159193,227.966259079285,177.286568409016,144.669754050518,158.214729253931,189.520595468289,196.606946101578,182.840593065423,184.260779340911,265.061189324921,175.565186695555,138.770063758097,163.015574514973,169.250696809373,150.013588993038,164.821572592899,73.0458511528228,143.690787455892,135.99426674155,196.451961756165,154.646787352545,168.010082661501,137.354642888853,203.152944513045,259.526218598266,261.471285137652,158.167160409212,74.4293569003043,56.0571527354621,35.5533351576666,179.254581957285,194.580376684876,178.955653535233,121.605831900799,104.869842877105,117.566174139341,130.807936381666,160.148841592186,154.973614156071,189.307636534094,104.066005815099,151.805242326248,84.2934839974215,129.271825086401,108.807097889835,97.7071773682352,94.9618529379692,99.3994268927205,76.4206220994301,89.2981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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:72931 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000127131_5end | |||
|cluster_id=chr2:32143542..32143562,- | |||
|description=CAGE_peak_1_at_Swi5_5end | |||
|id=chr2:32143542..32143562,- | |||
|ontology_enrichment_celltype=CL:0000055!5.62e-20!50;CL:0000221!2.28e-18!44;CL:0000133!2.28e-18!44;CL:0002319!3.05e-18!43;CL:0000393!2.23e-14!39;CL:0000211!2.23e-14!39;CL:0000540!1.18e-12!33;CL:0000047!1.18e-12!33;CL:0000031!1.18e-12!33;CL:0000404!1.18e-12!33;CL:0002321!2.66e-12!70;CL:0000220!2.66e-12!70;CL:0000117!9.85e-10!23;CL:0000337!9.85e-10!23;CL:0002453!9.18e-07!8;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.28e-18,44;CL:0000133,2.28e-18,44;CL:0002319,3.05e-18,43;CL:0000393,2.23e-14,39;CL:0000211,2.23e-14,39;CL:0000540,1.18e-12,33;CL:0000047,1.18e-12,33;CL:0000031,1.18e-12,33;CL:0000404,1.18e-12,33;CL:0002321,2.66e-12,70;CL:0000117,9.85e-10,23;CL:0000337,9.85e-10,23;CL:0002453,9.18e-07,8;CL:0000333,9.97e-07,10;CL:0000095,9.97e-07,10;CL:0000243,9.97e-07,10;CL:0000123,9.97e-07,10;CL:0000125,9.97e-07,10;CL:0000030,9.97e-07,10;CL:0000339,9.97e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.67e-15!75;UBERON:0001016!1.67e-15!75;UBERON:0001017!4.04e-15!73;UBERON:0005743!4.04e-15!73;UBERON:0004121!6.78e-14!102;UBERON:0000924!6.78e-14!102;UBERON:0006601!6.78e-14!102;UBERON:0002346!5.16e-09!71;UBERON:0003075!5.16e-09!71;UBERON:0007284!5.16e-09!71;UBERON:0002020!8.50e-09!34;UBERON:0001049!3.85e-08!52;UBERON:0005068!3.85e-08!52;UBERON:0006241!3.85e-08!52;UBERON:0007135!3.85e-08!52;UBERON:0004111!4.95e-08!122;UBERON:0002780!6.91e-08!39;UBERON:0001890!6.91e-08!39;UBERON:0006240!6.91e-08!39;UBERON:0003080!1.12e-07!40;UBERON:0002616!1.14e-07!49;UBERON:0000033!1.54e-07!63;UBERON:0000955!2.38e-07!50;UBERON:0006238!2.38e-07!50;UBERON:0002791!2.46e-07!29;UBERON:0003528!2.46e-07!29;UBERON:0001893!2.46e-07!29;UBERON:0000025!2.77e-07!114;UBERON:0003056!3.09e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.67e-15,75;UBERON:0001017,4.04e-15,73;UBERON:0004121,1.07e-13,95;UBERON:0000924,1.07e-13,95;UBERON:0006601,1.07e-13,95;UBERON:0010314,5.57e-12,92;UBERON:0000073,4.41e-09,54;UBERON:0002346,6.30e-09,64;UBERON:0003075,6.30e-09,64;UBERON:0007284,6.30e-09,64;UBERON:0002020,8.50e-09,34;UBERON:0010371,2.37e-08,73;UBERON:0001049,3.85e-08,52;UBERON:0005068,3.85e-08,52;UBERON:0006241,3.85e-08,52;UBERON:0007135,3.85e-08,52;UBERON:0004111,4.95e-08,122;UBERON:0002780,6.91e-08,39;UBERON:0001890,6.91e-08,39;UBERON:0006240,6.91e-08,39;UBERON:0003080,1.12e-07,40;UBERON:0003528,2.46e-07,29;UBERON:0002791,2.46e-07,29;UBERON:0001893,2.46e-07,29;UBERON:0000025,2.77e-07,114;UBERON:0003056,3.09e-07,49;UBERON:0002616,4.02e-07,46;UBERON:0000955,8.26e-07,47;UBERON:0006238,8.26e-07,47 | |||
|phase1_expression=154.863935150336,76.7745896806594,70.0698828659885,40.5302043151152,40.5725541256541,86.6257043065351,106.994589392751,66.3693882489702,21.2590970449017,26.2152269480633,89.0333434772626,71.3163101418308,64.885076643927,62.9426897416781,101.598477353777,85.4445628385066,85.3465491316339,70.8212561229244,71.1623910413784,73.8437994128573,116.509307506966,127.191708488334,158.548272007334,124.154120087684,130.075062365085,119.440248535924,122.336406909177,118.293706744553,119.524730838059,117.950100727648,173.614989843104,55.2476685909879,65.1968674839644,63.3926724061755,125.650454591804,144.125437525813,119.643242769748,92.4954903928566,150.01638614857,118.316366138078,84.117102788435,90.1620040145148,95.1600291941061,159.007681103154,159.972797464394,174.552961305759,406.061107716632,386.994652575293,236.602018805026,245.56496253082,270.4537665802,324.880795464836,86.9113899379074,76.1630249111912,78.3098552001941,206.064808264794,150.716589407786,179.45388811255,207.981321763667,224.292175211342,216.136508595607,292.422831175661,258.784785668342,241.173124231415,302.593106945494,257.904281725434,260.352496040494,357.323023949046,157.504521096578,171.997565434574,179.196867071377,216.809097162487,244.501474833436,171.977082097795,179.710258159193,227.966259079285,177.286568409016,144.669754050518,158.214729253931,189.520595468289,196.606946101578,182.840593065423,184.260779340911,265.061189324921,175.565186695555,138.770063758097,163.015574514973,169.250696809373,150.013588993038,164.821572592899,73.0458511528228,143.690787455892,135.99426674155,196.451961756165,154.646787352545,168.010082661501,137.354642888853,203.152944513045,259.526218598266,261.471285137652,158.167160409212,74.4293569003043,56.0571527354621,35.5533351576666,179.254581957285,194.580376684876,178.955653535233,121.605831900799,104.869842877105,117.566174139341,130.807936381666,160.148841592186,154.973614156071,189.307636534094,104.066005815099,151.805242326248,84.2934839974215,129.271825086401,108.807097889835,97.7071773682352,94.9618529379692,99.3994268927205,76.4206220994301,89.2981430885219,74.1441342119631,111.123819015737,91.1793097490053,188.36945753193,110.551097553566,122.978114951359,115.290151910294,94.1151097325354,122.372321415363,125.812005006523,135.270017008274,131.253181821816,119.457573796421,121.296796344841,231.241323966812,120.793625278836,156.274651998207,166.219221505401,159.354984877734,164.268251440929,105.932829178617,139.643955110486,126.497328155634,107.620602227431,137.747947484086,116.678451463544,124.221493659748,143.354009007634,139.301671862025,115.967971451881,159.275373579748,158.033207853884,176.957723202935,173.709837302433,120.769487243127,100.455999679718,151.034782627826,172.13933075673,123.58075197548,157.214621166176,148.25069548477,174.632992507556,138.160801720804,141.402829606642,153.040660419537,158.749937764485,161.245862186707,161.989586067268,156.100131971937,177.957711276253,131.641507801144,112.474741330558,62.4491499839378,112.920391965333,150.581504877875,147.470286631378,116.36731757385,107.093951574995,106.296704957848,113.184247536973,103.921864478248,140.982305243753,123.405587520932,132.505010379406,122.242482623688,121.34062016832,114.769304483463,93.1981158830439,195.926941684533,152.407515821378,112.70773567308,145.6106994094,143.718792991211,104.642643276355,127.801041528124,175.508465947747,151.974768550451,163.377845032464,160.08441862706,105.612951918288,110.46615525362,106.584641270421,106.501563728964,110.700316326359,112.544626487388,115.941543392677,92.9034849420953,117.237723431311,90.5739701122334,161.881312235799,158.203100269082,160.640166374363,166.301402334813,158.241475007184,117.503028945961,144.960930004421,139.823949787258,155.995733827398,145.507953938871,116.24934266462,111.166380293768,87.4198742402939,125.319939564422,118.483608962095,100.934868560189,116.179090133458,129.16836643569,110.222582639112,96.5064217211342,100.622551506461,142.611639175521,125.275282822349,124.747808420514,128.112373445278,198.033414015024,120.68110320369,191.197980966252,190.924545961056,173.415835174903,173.013409717648,174.228563132432,151.445943972025,169.210873300106,169.800653446472,169.578456739059,114.711709962585,118.945791404529,170.052651502229,116.952836815868,107.230579932148,136.727492490162,163.876929404612,210.114872090502,212.180714725385,170.389192192206,141.420168054207,89.6746177293727,141.41462076675,145.094433002582,169.711739011533,154.965354605248,156.766025737244,155.921339435235,152.331685550488,197.789427503832,154.75133929281,143.822929483884,133.241506748747,164.055373540315,130.310998221048,143.149741918863,118.625959683739,219.205227666632,118.223443359041,106.405057192602,130.215604919889,134.413259347532,126.060211004207,111.345679592603,111.996882414348,92.0994047500426,144.264420706293,125.191500501925,123.946444709087,109.902159087704,95.1717200539134,86.1790640068846,89.4289780348175,75.1807857496065,213.846218435385,122.422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| |||
|short_description=p1@Swi5 | |||
}} |
Revision as of 01:11, 5 August 2015
Short description: | p1@Swi5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Swi5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000127131_5end |
EntrezGene: | 72931 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.28e-18 | 44 |
neurectodermal cell | 2.28e-18 | 44 |
neural cell | 3.05e-18 | 43 |
electrically responsive cell | 2.23e-14 | 39 |
electrically active cell | 2.23e-14 | 39 |
neuron | 1.18e-12 | 33 |
neuronal stem cell | 1.18e-12 | 33 |
neuroblast | 1.18e-12 | 33 |
electrically signaling cell | 1.18e-12 | 33 |
embryonic cell | 2.66e-12 | 70 |
CNS neuron (sensu Vertebrata) | 9.85e-10 | 23 |
neuroblast (sensu Vertebrata) | 9.85e-10 | 23 |
oligodendrocyte precursor cell | 9.18e-07 | 8 |
migratory neural crest cell | 9.97e-07 | 10 |
neuron associated cell | 9.97e-07 | 10 |
glial cell (sensu Vertebrata) | 9.97e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.97e-07 | 10 |
glial cell | 9.97e-07 | 10 |
glioblast | 9.97e-07 | 10 |
glioblast (sensu Vertebrata) | 9.97e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.67e-15 | 75 |
central nervous system | 4.04e-15 | 73 |
ectoderm-derived structure | 1.07e-13 | 95 |
ectoderm | 1.07e-13 | 95 |
presumptive ectoderm | 1.07e-13 | 95 |
structure with developmental contribution from neural crest | 5.57e-12 | 92 |
regional part of nervous system | 4.41e-09 | 54 |
neurectoderm | 6.30e-09 | 64 |
neural plate | 6.30e-09 | 64 |
presumptive neural plate | 6.30e-09 | 64 |
gray matter | 8.50e-09 | 34 |
ecto-epithelium | 2.37e-08 | 73 |
neural tube | 3.85e-08 | 52 |
neural rod | 3.85e-08 | 52 |
future spinal cord | 3.85e-08 | 52 |
neural keel | 3.85e-08 | 52 |
anatomical conduit | 4.95e-08 | 122 |
regional part of forebrain | 6.91e-08 | 39 |
forebrain | 6.91e-08 | 39 |
future forebrain | 6.91e-08 | 39 |
anterior neural tube | 1.12e-07 | 40 |
brain grey matter | 2.46e-07 | 29 |
regional part of telencephalon | 2.46e-07 | 29 |
telencephalon | 2.46e-07 | 29 |
tube | 2.77e-07 | 114 |
pre-chordal neural plate | 3.09e-07 | 49 |
regional part of brain | 4.02e-07 | 46 |
brain | 8.26e-07 | 47 |
future brain | 8.26e-07 | 47 |