FFCP PHASE1:Mm9::chr6:117791276..117791304,+: Difference between revisions
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{{FFCP|EntrezGene=232337|HGNC=|UniProt=D3Z3T2,Q80V23,D3YYX3|association_with_transcript=0bp_to_ENSMUST00000112858,ENSMUST00000112860,ENSMUST00000134526,ENSMUST00000136889,uc009dla.1_5end|description=CAGE_peak_2_at_Zfp637_5end|id=chr6:117791276..117791304,+|ontology_enrichment_celltype=CL:0000221!4.92e-14!44;CL:0000133!4.92e-14!44;CL:0002319!1.20e-13!43;CL:0000055!1.71e-13!50;CL:0000540!8.15e-10!33;CL:0000047!8.15e-10!33;CL:0000031!8.15e-10!33;CL:0000404!8.15e-10!33;CL:0000117!8.46e-10!23;CL:0000337!8.46e-10!23;CL:0000393!3.16e-09!39;CL:0000211!3.16e-09!39;CL:0002321!6.57e-09!70;CL:0000220!6.57e-09!70|ontology_enrichment_celltype_v019_2=CL:0000221,2.32e-14,44;CL:0000133,2.32e-14,44;CL:0002319,5.81e-14,43;CL:0000540,4.96e-10,33;CL:0000047,4.96e-10,33;CL:0000031,4.96e-10,33;CL:0000404,4.96e-10,33;CL:0000117,5.15e-10,23;CL:0000337,5.15e-10,23;CL:0000393,1.99e-09,39;CL:0000211,1.99e-09,39;CL:0002321,2.80e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.33e-22!75;UBERON:0001016!7.33e-22!75;UBERON:0001017!4.11e-21!73;UBERON:0005743!4.11e-21!73;UBERON:0001049!2.10e-18!52;UBERON:0005068!2.10e-18!52;UBERON:0006241!2.10e-18!52;UBERON:0007135!2.10e-18!52;UBERON:0000033!5.75e-17!63;UBERON:0002616!6.41e-17!49;UBERON:0002346!7.44e-17!71;UBERON:0003075!7.44e-17!71;UBERON:0007284!7.44e-17!71;UBERON:0000955!1.36e-16!50;UBERON:0006238!1.36e-16!50;UBERON:0004121!3.07e-16!102;UBERON:0000924!3.07e-16!102;UBERON:0006601!3.07e-16!102;UBERON:0003056!1.50e-15!49;UBERON:0002780!3.10e-15!39;UBERON:0001890!3.10e-15!39;UBERON:0006240!3.10e-15!39;UBERON:0003080!3.44e-15!40;UBERON:0000025!2.03e-14!114;UBERON:0002020!1.55e-13!34;UBERON:0004111!5.91e-13!122;UBERON:0002791!2.80e-11!29;UBERON:0003528!2.80e-11!29;UBERON:0001893!2.80e-11!29;UBERON:0000153!1.09e-09!94;UBERON:0000956!2.49e-08!21;UBERON:0001869!2.49e-08!21;UBERON:0000203!2.49e-08!21;UBERON:0007811!4.67e-08!86;UBERON:0002619!7.67e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.15e-22,75;UBERON:0001017,1.26e-21,73;UBERON:0000073,8.17e-20,54;UBERON:0002346,2.13e-19,64;UBERON:0003075,2.13e-19,64;UBERON:0007284,2.13e-19,64;UBERON:0001049,7.62e-19,52;UBERON:0005068,7.62e-19,52;UBERON:0006241,7.62e-19,52;UBERON:0007135,7.62e-19,52;UBERON:0004121,2.51e-18,95;UBERON:0000924,2.51e-18,95;UBERON:0006601,2.51e-18,95;UBERON:0002616,8.96e-17,46;UBERON:0000955,1.98e-16,47;UBERON:0006238,1.98e-16,47;UBERON:0010314,2.73e-16,92;UBERON:0010371,3.15e-16,73;UBERON:0003056,7.04e-16,49;UBERON:0002780,1.36e-15,39;UBERON:0001890,1.36e-15,39;UBERON:0006240,1.36e-15,39;UBERON:0003080,1.51e-15,40;UBERON:0000025,7.12e-14,114;UBERON:0002020,7.54e-14,34;UBERON:0004111,2.20e-12,122;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0000956,1.66e-08,21;UBERON:0001869,1.66e-08,21;UBERON:0000203,1.66e-08,21;UBERON:0002619,5.57e-07,17|phase1_expression=5.44506080156299,0.697950815278722,0,0.60492842261366,0,0.503637815735669,1.40167584357315,1.03298658753261,0.281577444303333,0.468129052643987,0.171217968225505,0.478632953972018,0.171200729931206,0.34968160967599,0.666219523631325,0.202475267389826,0,0.157731082679119,0,0,0.850432901510698,1.09220046320974,1.30599894569468,0,0.91763712426868,0.57423196411502,0,0.430942465371778,0.190023419456374,0.252030129759931,0.886922042621219,0.635030673459631,0,0,1.73310971850765,0.664938581433969,1.42918549383658,0,0,0,0.588231488031014,0,0.485510353031154,2.14024590558481,1.92616169317078,2.75320128242522,3.9119567217402,4.14247797122848,4.61340983742391,4.08302788055995,2.93971485413261,5.75010257459886,0.335565212115473,0.725362142011344,0,1.80081605225163,2.29226751951005,1.03134418455488,3.03474691289397,3.1739458756322,1.90149421051854,3.38844532069132,1.77858959222228,0.449949858640699,0,0.7104801149461,2.39680088414724,3.07374644257244,6.32506635081714,6.48028503992115,6.30974884054146,4.57041575046086,3.09215957332259,4.28717797252339,4.60058260887535,7.35375029288017,4.40463523997555,3.31987079021488,1.38245879930619,5.27545150920775,5.03182039813253,6.77187381723788,2.51264699101243,5.06486349028512,1.37518422999129,3.53554302568401,4.27115042397309,3.91438836233131,2.57469057332826,3.92972112555285,2.02905142091174,4.30211938490693,2.03991400112325,3.77792234146472,5.84798775702902,1.79210754838934,2.38755514223978,5.28333999991979,3.63700406444016,3.18005617059306,3.38024207464033,3.84979432242953,2.54805239706646,0,1.29894624606728,1.01343946190039,2.02209778005913,2.51204535381932,0.258937883647172,0.445326417194474,1.73485326766136,1.21786191324856,1.61430848079241,1.95939432718409,1.76383060703557,1.63366568728578,1.23597483867187,0.433798070759735,0,1.61766849947409,0.441683036920787,0.969750506270444,0,1.17112318804619,3.56059401582874,0,0.11981512450592,0,0.254140454146129,2.24685959107234,3.20250421973039,5.02617408451458,1.56441888173049,2.04572365864264,2.28566849015516,3.24482526135515,2.24046600470696,0.870848794270651,1.51633655060205,1.26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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:232337 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z3T2,uniprot:Q80V23,uniprot:D3YYX3 | |||
|association_with_transcript=0bp_to_ENSMUST00000112858,ENSMUST00000112860,ENSMUST00000134526,ENSMUST00000136889,uc009dla.1_5end | |||
|cluster_id=chr6:117791276..117791304,+ | |||
|description=CAGE_peak_2_at_Zfp637_5end | |||
|id=chr6:117791276..117791304,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.92e-14!44;CL:0000133!4.92e-14!44;CL:0002319!1.20e-13!43;CL:0000055!1.71e-13!50;CL:0000540!8.15e-10!33;CL:0000047!8.15e-10!33;CL:0000031!8.15e-10!33;CL:0000404!8.15e-10!33;CL:0000117!8.46e-10!23;CL:0000337!8.46e-10!23;CL:0000393!3.16e-09!39;CL:0000211!3.16e-09!39;CL:0002321!6.57e-09!70;CL:0000220!6.57e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.32e-14,44;CL:0000133,2.32e-14,44;CL:0002319,5.81e-14,43;CL:0000540,4.96e-10,33;CL:0000047,4.96e-10,33;CL:0000031,4.96e-10,33;CL:0000404,4.96e-10,33;CL:0000117,5.15e-10,23;CL:0000337,5.15e-10,23;CL:0000393,1.99e-09,39;CL:0000211,1.99e-09,39;CL:0002321,2.80e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.33e-22!75;UBERON:0001016!7.33e-22!75;UBERON:0001017!4.11e-21!73;UBERON:0005743!4.11e-21!73;UBERON:0001049!2.10e-18!52;UBERON:0005068!2.10e-18!52;UBERON:0006241!2.10e-18!52;UBERON:0007135!2.10e-18!52;UBERON:0000033!5.75e-17!63;UBERON:0002616!6.41e-17!49;UBERON:0002346!7.44e-17!71;UBERON:0003075!7.44e-17!71;UBERON:0007284!7.44e-17!71;UBERON:0000955!1.36e-16!50;UBERON:0006238!1.36e-16!50;UBERON:0004121!3.07e-16!102;UBERON:0000924!3.07e-16!102;UBERON:0006601!3.07e-16!102;UBERON:0003056!1.50e-15!49;UBERON:0002780!3.10e-15!39;UBERON:0001890!3.10e-15!39;UBERON:0006240!3.10e-15!39;UBERON:0003080!3.44e-15!40;UBERON:0000025!2.03e-14!114;UBERON:0002020!1.55e-13!34;UBERON:0004111!5.91e-13!122;UBERON:0002791!2.80e-11!29;UBERON:0003528!2.80e-11!29;UBERON:0001893!2.80e-11!29;UBERON:0000153!1.09e-09!94;UBERON:0000956!2.49e-08!21;UBERON:0001869!2.49e-08!21;UBERON:0000203!2.49e-08!21;UBERON:0007811!4.67e-08!86;UBERON:0002619!7.67e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.15e-22,75;UBERON:0001017,1.26e-21,73;UBERON:0000073,8.17e-20,54;UBERON:0002346,2.13e-19,64;UBERON:0003075,2.13e-19,64;UBERON:0007284,2.13e-19,64;UBERON:0001049,7.62e-19,52;UBERON:0005068,7.62e-19,52;UBERON:0006241,7.62e-19,52;UBERON:0007135,7.62e-19,52;UBERON:0004121,2.51e-18,95;UBERON:0000924,2.51e-18,95;UBERON:0006601,2.51e-18,95;UBERON:0002616,8.96e-17,46;UBERON:0000955,1.98e-16,47;UBERON:0006238,1.98e-16,47;UBERON:0010314,2.73e-16,92;UBERON:0010371,3.15e-16,73;UBERON:0003056,7.04e-16,49;UBERON:0002780,1.36e-15,39;UBERON:0001890,1.36e-15,39;UBERON:0006240,1.36e-15,39;UBERON:0003080,1.51e-15,40;UBERON:0000025,7.12e-14,114;UBERON:0002020,7.54e-14,34;UBERON:0004111,2.20e-12,122;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0000956,1.66e-08,21;UBERON:0001869,1.66e-08,21;UBERON:0000203,1.66e-08,21;UBERON:0002619,5.57e-07,17 | |||
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| |||
|short_description=p2@Zfp637 | |||
}} |
Revision as of 23:46, 4 August 2015
Short description: | p2@Zfp637 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Zfp637_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000112858, ENSMUST00000112860, ENSMUST00000134526, ENSMUST00000136889, uc009dla.1_5end |
EntrezGene: | 232337 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.32e-14 | 44 |
neurectodermal cell | 2.32e-14 | 44 |
neural cell | 5.81e-14 | 43 |
neuron | 4.96e-10 | 33 |
neuronal stem cell | 4.96e-10 | 33 |
neuroblast | 4.96e-10 | 33 |
electrically signaling cell | 4.96e-10 | 33 |
CNS neuron (sensu Vertebrata) | 5.15e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.15e-10 | 23 |
electrically responsive cell | 1.99e-09 | 39 |
electrically active cell | 1.99e-09 | 39 |
embryonic cell | 2.80e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.15e-22 | 75 |
central nervous system | 1.26e-21 | 73 |
regional part of nervous system | 8.17e-20 | 54 |
neurectoderm | 2.13e-19 | 64 |
neural plate | 2.13e-19 | 64 |
presumptive neural plate | 2.13e-19 | 64 |
neural tube | 7.62e-19 | 52 |
neural rod | 7.62e-19 | 52 |
future spinal cord | 7.62e-19 | 52 |
neural keel | 7.62e-19 | 52 |
ectoderm-derived structure | 2.51e-18 | 95 |
ectoderm | 2.51e-18 | 95 |
presumptive ectoderm | 2.51e-18 | 95 |
regional part of brain | 8.96e-17 | 46 |
brain | 1.98e-16 | 47 |
future brain | 1.98e-16 | 47 |
structure with developmental contribution from neural crest | 2.73e-16 | 92 |
ecto-epithelium | 3.15e-16 | 73 |
pre-chordal neural plate | 7.04e-16 | 49 |
regional part of forebrain | 1.36e-15 | 39 |
forebrain | 1.36e-15 | 39 |
future forebrain | 1.36e-15 | 39 |
anterior neural tube | 1.51e-15 | 40 |
tube | 7.12e-14 | 114 |
gray matter | 7.54e-14 | 34 |
anatomical conduit | 2.20e-12 | 122 |
brain grey matter | 1.56e-11 | 29 |
regional part of telencephalon | 1.56e-11 | 29 |
telencephalon | 1.56e-11 | 29 |
cerebral cortex | 1.66e-08 | 21 |
cerebral hemisphere | 1.66e-08 | 21 |
pallium | 1.66e-08 | 21 |
regional part of cerebral cortex | 5.57e-07 | 17 |