FFCP PHASE1:Mm9::chr5:89194029..89194055,+: Difference between revisions
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{{FFCP|EntrezGene=13178|HGNC=|UniProt=P43346,Q545E8|association_with_transcript=0bp_to_NM_007832,uc008yah.1_5end|description=CAGE_peak_6_at_Dck_5end|id=chr5:89194029..89194055,+|ontology_enrichment_celltype=CL:0000117!2.30e-13!23;CL:0000337!2.30e-13!23;CL:0000540!9.34e-13!33;CL:0000047!9.34e-13!33;CL:0000031!9.34e-13!33;CL:0000404!9.34e-13!33;CL:0000221!1.65e-12!44;CL:0000133!1.65e-12!44;CL:0002319!3.71e-12!43;CL:0000055!2.32e-09!50;CL:0000393!6.36e-09!39;CL:0000211!6.36e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.08e-15,23;CL:0000337,5.08e-15,23;CL:0000540,5.34e-14,33;CL:0000047,5.34e-14,33;CL:0000031,5.34e-14,33;CL:0000404,5.34e-14,33;CL:0000221,8.07e-14,44;CL:0000133,8.07e-14,44;CL:0002319,2.03e-13,43;CL:0000393,1.38e-10,39;CL:0000211,1.38e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.53e-23!73;UBERON:0005743!4.53e-23!73;UBERON:0004121!1.26e-22!102;UBERON:0000924!1.26e-22!102;UBERON:0006601!1.26e-22!102;UBERON:0000073!1.21e-21!75;UBERON:0001016!1.21e-21!75;UBERON:0000033!4.11e-20!63;UBERON:0002346!7.40e-20!71;UBERON:0003075!7.40e-20!71;UBERON:0007284!7.40e-20!71;UBERON:0001049!1.59e-18!52;UBERON:0005068!1.59e-18!52;UBERON:0006241!1.59e-18!52;UBERON:0007135!1.59e-18!52;UBERON:0000955!8.77e-18!50;UBERON:0006238!8.77e-18!50;UBERON:0002616!1.76e-17!49;UBERON:0007811!8.26e-16!86;UBERON:0000153!1.41e-15!94;UBERON:0002020!3.12e-15!34;UBERON:0003056!7.23e-15!49;UBERON:0002791!3.99e-13!29;UBERON:0003528!3.99e-13!29;UBERON:0001893!3.99e-13!29;UBERON:0003080!5.06e-13!40;UBERON:0002780!1.56e-12!39;UBERON:0001890!1.56e-12!39;UBERON:0006240!1.56e-12!39;UBERON:0000956!1.75e-09!21;UBERON:0001869!1.75e-09!21;UBERON:0000203!1.75e-09!21;UBERON:0002619!3.11e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.40e-25,73;UBERON:0004121,4.94e-25,95;UBERON:0000924,4.94e-25,95;UBERON:0006601,4.94e-25,95;UBERON:0001016,1.45e-23,75;UBERON:0002346,3.65e-23,64;UBERON:0003075,3.65e-23,64;UBERON:0007284,3.65e-23,64;UBERON:0010371,1.12e-22,73;UBERON:0000073,1.40e-21,54;UBERON:0001049,3.34e-20,52;UBERON:0005068,3.34e-20,52;UBERON:0006241,3.34e-20,52;UBERON:0007135,3.34e-20,52;UBERON:0000955,2.14e-17,47;UBERON:0006238,2.14e-17,47;UBERON:0002020,3.77e-17,34;UBERON:0002616,4.66e-17,46;UBERON:0003056,3.92e-16,49;UBERON:0010314,3.00e-15,92;UBERON:0003528,9.56e-15,29;UBERON:0002791,9.56e-15,29;UBERON:0001893,9.56e-15,29;UBERON:0003080,5.58e-14,40;UBERON:0002780,1.99e-13,39;UBERON:0001890,1.99e-13,39;UBERON:0006240,1.99e-13,39;UBERON:0000956,1.36e-10,21;UBERON:0001869,1.36e-10,21;UBERON:0000203,1.36e-10,21;UBERON:0002619,4.95e-08,17;UBERON:0003076,4.16e-07,12;UBERON:0003057,4.16e-07,12|phase1_expression=1.76163731815273,0,0,0.30246421130683,0,0.33575854382378,0,4.51931632045517,0.422366166455,0,0.513653904676515,0.319088635981346,6.16322627752341,5.42006494997784,1.66554880907831,1.41732687172878,2.09868563438444,2.36596624018678,2.60517423850904,3.39511721438424,1.87095238332354,0.297872853602656,0.522399578277871,0.47997726838022,0,0,0,0,0.190023419456374,0,0.443461021310609,0.635030673459631,0,0,0,0.664938581433969,0.204169356262369,2.51118978442145,11.720030167857,7.32933241563318,12.3528612486513,10.2456822743767,13.1087795318411,0.125896817975577,0.304130793658544,0,3.9119567217402,2.61630187656536,1.75748946187577,1.1665793944457,1.53985063787899,1.43752564364972,1.51004345451963,2.17608642603403,0.672187598284928,0.514518872071894,0.286533439938757,2.57836046138721,8.29497489524351,4.23192783417626,4.43681982454325,0.338844532069132,0.889294796111139,4.49949858640699,1.97773272513395,1.4209602298922,1.49800055259202,1.53687322128622,9.02099627083756,8.6403800532282,7.78202357000113,2.28520787523043,3.3130281142742,6.61450315760752,8.14686503655009,10.1114066527102,6.60695285996332,4.21368215681119,5.06901559745603,6.06676923558892,7.593474419,5.73004707612436,3.62937898701795,1.68828783009504,4.5839474333043,3.24091444021034,2.84743361598206,6.33758115806022,0.37863096666592,0.529000920747499,0.869593466105033,3.44169550792555,2.719885334831,0,0.649776417447669,0,0.702222100658759,0.340860645156116,0.779358013808606,1.06001872353102,2.81686839553361,0,0,0,0,0,0,1.25602267690966,3.36619248741323,1.33597925158342,1.21439728736295,0.913396434936424,1.15307748628029,1.05505848386836,0.587943535678524,1.50799909595611,0.247194967734374,2.4581890676385,4.42305275974937,1.29413479957927,0.883366073841574,1.93950101254089,0,5.27005434620785,3.97948742945565,0.510914110417183,0.11981512450592,0,0.127070227073065,4.19413790333504,3.20250421973039,3.14135880282161,3.12883776346098,5.37002460393694,3.74018480207208,2.92034273521964,0.611036183101898,0.746441823660558,1.0108910337347,3.57751155007006,1.17108398666433,0.459804208866946,2.16074555766419,2.10986744970001,2.65342346690179,3.33095672740609,4.31027932974753,3.10444044886819,0.862271971731369,3.02569728268511,2.81521798662318,0.876782929710299,0.556094498451196,0.696504333044333,0.823128545631774,0.5971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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13178 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P43346,uniprot:Q545E8 | |||
|association_with_transcript=0bp_to_NM_007832,uc008yah.1_5end | |||
|cluster_id=chr5:89194029..89194055,+ | |||
|description=CAGE_peak_6_at_Dck_5end | |||
|id=chr5:89194029..89194055,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.30e-13!23;CL:0000337!2.30e-13!23;CL:0000540!9.34e-13!33;CL:0000047!9.34e-13!33;CL:0000031!9.34e-13!33;CL:0000404!9.34e-13!33;CL:0000221!1.65e-12!44;CL:0000133!1.65e-12!44;CL:0002319!3.71e-12!43;CL:0000055!2.32e-09!50;CL:0000393!6.36e-09!39;CL:0000211!6.36e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.08e-15,23;CL:0000337,5.08e-15,23;CL:0000540,5.34e-14,33;CL:0000047,5.34e-14,33;CL:0000031,5.34e-14,33;CL:0000404,5.34e-14,33;CL:0000221,8.07e-14,44;CL:0000133,8.07e-14,44;CL:0002319,2.03e-13,43;CL:0000393,1.38e-10,39;CL:0000211,1.38e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.53e-23!73;UBERON:0005743!4.53e-23!73;UBERON:0004121!1.26e-22!102;UBERON:0000924!1.26e-22!102;UBERON:0006601!1.26e-22!102;UBERON:0000073!1.21e-21!75;UBERON:0001016!1.21e-21!75;UBERON:0000033!4.11e-20!63;UBERON:0002346!7.40e-20!71;UBERON:0003075!7.40e-20!71;UBERON:0007284!7.40e-20!71;UBERON:0001049!1.59e-18!52;UBERON:0005068!1.59e-18!52;UBERON:0006241!1.59e-18!52;UBERON:0007135!1.59e-18!52;UBERON:0000955!8.77e-18!50;UBERON:0006238!8.77e-18!50;UBERON:0002616!1.76e-17!49;UBERON:0007811!8.26e-16!86;UBERON:0000153!1.41e-15!94;UBERON:0002020!3.12e-15!34;UBERON:0003056!7.23e-15!49;UBERON:0002791!3.99e-13!29;UBERON:0003528!3.99e-13!29;UBERON:0001893!3.99e-13!29;UBERON:0003080!5.06e-13!40;UBERON:0002780!1.56e-12!39;UBERON:0001890!1.56e-12!39;UBERON:0006240!1.56e-12!39;UBERON:0000956!1.75e-09!21;UBERON:0001869!1.75e-09!21;UBERON:0000203!1.75e-09!21;UBERON:0002619!3.11e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.40e-25,73;UBERON:0004121,4.94e-25,95;UBERON:0000924,4.94e-25,95;UBERON:0006601,4.94e-25,95;UBERON:0001016,1.45e-23,75;UBERON:0002346,3.65e-23,64;UBERON:0003075,3.65e-23,64;UBERON:0007284,3.65e-23,64;UBERON:0010371,1.12e-22,73;UBERON:0000073,1.40e-21,54;UBERON:0001049,3.34e-20,52;UBERON:0005068,3.34e-20,52;UBERON:0006241,3.34e-20,52;UBERON:0007135,3.34e-20,52;UBERON:0000955,2.14e-17,47;UBERON:0006238,2.14e-17,47;UBERON:0002020,3.77e-17,34;UBERON:0002616,4.66e-17,46;UBERON:0003056,3.92e-16,49;UBERON:0010314,3.00e-15,92;UBERON:0003528,9.56e-15,29;UBERON:0002791,9.56e-15,29;UBERON:0001893,9.56e-15,29;UBERON:0003080,5.58e-14,40;UBERON:0002780,1.99e-13,39;UBERON:0001890,1.99e-13,39;UBERON:0006240,1.99e-13,39;UBERON:0000956,1.36e-10,21;UBERON:0001869,1.36e-10,21;UBERON:0000203,1.36e-10,21;UBERON:0002619,4.95e-08,17;UBERON:0003076,4.16e-07,12;UBERON:0003057,4.16e-07,12 | |||
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| |||
|short_description=p6@Dck | |||
}} |
Revision as of 17:28, 4 August 2015
Short description: | p6@Dck |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Dck_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_007832, uc008yah.1_5end |
EntrezGene: | 13178 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.08e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.08e-15 | 23 |
neuron | 5.34e-14 | 33 |
neuronal stem cell | 5.34e-14 | 33 |
neuroblast | 5.34e-14 | 33 |
electrically signaling cell | 5.34e-14 | 33 |
ectodermal cell | 8.07e-14 | 44 |
neurectodermal cell | 8.07e-14 | 44 |
neural cell | 2.03e-13 | 43 |
electrically responsive cell | 1.38e-10 | 39 |
electrically active cell | 1.38e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.40e-25 | 73 |
ectoderm-derived structure | 4.94e-25 | 95 |
ectoderm | 4.94e-25 | 95 |
presumptive ectoderm | 4.94e-25 | 95 |
nervous system | 1.45e-23 | 75 |
neurectoderm | 3.65e-23 | 64 |
neural plate | 3.65e-23 | 64 |
presumptive neural plate | 3.65e-23 | 64 |
ecto-epithelium | 1.12e-22 | 73 |
regional part of nervous system | 1.40e-21 | 54 |
neural tube | 3.34e-20 | 52 |
neural rod | 3.34e-20 | 52 |
future spinal cord | 3.34e-20 | 52 |
neural keel | 3.34e-20 | 52 |
brain | 2.14e-17 | 47 |
future brain | 2.14e-17 | 47 |
gray matter | 3.77e-17 | 34 |
regional part of brain | 4.66e-17 | 46 |
pre-chordal neural plate | 3.92e-16 | 49 |
structure with developmental contribution from neural crest | 3.00e-15 | 92 |
brain grey matter | 9.56e-15 | 29 |
regional part of telencephalon | 9.56e-15 | 29 |
telencephalon | 9.56e-15 | 29 |
anterior neural tube | 5.58e-14 | 40 |
regional part of forebrain | 1.99e-13 | 39 |
forebrain | 1.99e-13 | 39 |
future forebrain | 1.99e-13 | 39 |
cerebral cortex | 1.36e-10 | 21 |
cerebral hemisphere | 1.36e-10 | 21 |
pallium | 1.36e-10 | 21 |
regional part of cerebral cortex | 4.95e-08 | 17 |
posterior neural tube | 4.16e-07 | 12 |
chordal neural plate | 4.16e-07 | 12 |