FFCP PHASE1:Mm9::chr14:68701910..68701927,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=18039|HGNC=|MCL_coexpression_id=464|UniProt=P08551|association_with_transcript=0bp_to_ENSMUST00000022639_5end|description=CAGE_peak_1_at_Nefl_5end|id=chr14:68701910..68701927,+|ontology_enrichment_celltype=CL:0000540!2.62e-12!33;CL:0000047!2.62e-12!33;CL:0000031!2.62e-12!33;CL:0000404!2.62e-12!33;CL:0000117!5.38e-11!23;CL:0000337!5.38e-11!23;CL:0000221!6.37e-09!44;CL:0000133!6.37e-09!44;CL:0002319!1.39e-08!43;CL:0000393!1.25e-07!39;CL:0000211!1.25e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.80e-13,33;CL:0000047,2.80e-13,33;CL:0000031,2.80e-13,33;CL:0000404,2.80e-13,33;CL:0000117,7.55e-12,23;CL:0000337,7.55e-12,23;CL:0000221,1.43e-09,44;CL:0000133,1.43e-09,44;CL:0002319,3.34e-09,43;CL:0000393,5.33e-09,39;CL:0000211,5.33e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.90e-25!71;UBERON:0003075!1.90e-25!71;UBERON:0007284!1.90e-25!71;UBERON:0004121!1.89e-24!102;UBERON:0000924!1.89e-24!102;UBERON:0006601!1.89e-24!102;UBERON:0000073!2.41e-24!75;UBERON:0001016!2.41e-24!75;UBERON:0001017!9.37e-24!73;UBERON:0005743!9.37e-24!73;UBERON:0000033!5.59e-21!63;UBERON:0001049!2.25e-19!52;UBERON:0005068!2.25e-19!52;UBERON:0006241!2.25e-19!52;UBERON:0007135!2.25e-19!52;UBERON:0003056!7.51e-18!49;UBERON:0000955!1.18e-17!50;UBERON:0006238!1.18e-17!50;UBERON:0002616!3.56e-17!49;UBERON:0003080!3.97e-14!40;UBERON:0002780!1.63e-13!39;UBERON:0001890!1.63e-13!39;UBERON:0006240!1.63e-13!39;UBERON:0002020!2.88e-13!34;UBERON:0007811!2.12e-10!86;UBERON:0000153!3.79e-10!94;UBERON:0002791!5.14e-10!29;UBERON:0003528!5.14e-10!29;UBERON:0001893!5.14e-10!29;UBERON:0002021!2.07e-07!10;UBERON:0000411!2.07e-07!10;UBERON:0001950!2.07e-07!10;UBERON:0000468!3.00e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.95e-26,64;UBERON:0003075,1.95e-26,64;UBERON:0007284,1.95e-26,64;UBERON:0001016,2.18e-26,75;UBERON:0001017,9.59e-26,73;UBERON:0004121,3.35e-24,95;UBERON:0000924,3.35e-24,95;UBERON:0006601,3.35e-24,95;UBERON:0000073,1.59e-22,54;UBERON:0010371,1.18e-21,73;UBERON:0001049,4.49e-21,52;UBERON:0005068,4.49e-21,52;UBERON:0006241,4.49e-21,52;UBERON:0007135,4.49e-21,52;UBERON:0003056,1.02e-19,49;UBERON:0010314,2.85e-18,92;UBERON:0000955,4.90e-17,47;UBERON:0006238,4.90e-17,47;UBERON:0002616,1.58e-16,46;UBERON:0003080,1.22e-15,40;UBERON:0002780,5.76e-15,39;UBERON:0001890,5.76e-15,39;UBERON:0006240,5.76e-15,39;UBERON:0002020,1.02e-14,34;UBERON:0003528,3.86e-11,29;UBERON:0002791,3.86e-11,29;UBERON:0001893,3.86e-11,29;UBERON:0002021,6.08e-08,10;UBERON:0000411,6.08e-08,10;UBERON:0001950,6.08e-08,10;UBERON:0000956,4.03e-07,21;UBERON:0001869,4.03e-07,21;UBERON:0000203,4.03e-07,21;UBERON:0002619,9.36e-07,17|phase1_expression=64.3798365361272,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,64.7179438049641,0,0,0,0.22940928106717,0,0,0.215471232685889,0.380046838912748,0.252030129759931,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0,1.53985063787899,1.43752564364972,0,0,0,0,0,0,221.53652464126,212.654373667357,238.320607718323,4.74382344896785,2.66788438833342,0.449949858640699,0.988866362566974,2.8419204597844,0.299600110518405,0,3.42175720617976,6.61529097825284,6.94072372459561,1419.97104347131,979.551979120406,33.4399881856825,29.5204050736168,28.4957823849107,504.3307349772,643.16112193509,697.680874049858,152.460548616104,159.09701222459,130.749256009747,954.805856584723,223.416756182577,345.629636471144,883.296499250056,841.701376884297,701.980312978082,35.1369537065974,57.9633866019045,0,0,0,2.69851595818909,0.649776417447669,0,30.4764391685902,0,0,0,70.2808664685636,0,0,0,0,0,0,10.7332846935916,0.258937883647172,2.9688427812965,93.3351058001811,59.9796992274918,44.9700219649314,39.3386091842345,33.865547655083,1.88499886994513,0,0.722996784599558,0,1.45590164952668,0,0,3.72783522436244,141.120344159566,143.889887580844,0,0,0,0,478.131720980194,304.237900874387,45.9894928733084,336.00241093167,350.330176542553,465.653007857974,388.56782504728,10.3876151127323,0,0,40.1943944743165,35.0023991569673,160.471668894564,139.548150599146,106.849715845522,95.659317806767,84.8112828285706,99.3238280333126,213.430280859688,0.215567992932842,1.89106080167819,2.99116911078713,7.67185063496512,6.95118123063995,4.179025998266,4.7329891373827,3.98068533636986,0,0,0,1.03562886267751,7.03578179943289,1.62055855314913,1.89395788468168,0.787056926989615,2.1597395804233,0.465067889500816,0.804820204198858,0.233530684734339,0.658239399653922,0.32833492815819,0.405344047729279,0,0.219550115291051,0.939444931322602,347.398995027938,33.1352851861296,0.660837565967596,1.05780226665418,18.7693660471006,22.0624838267417,17.1393723558384,8.26902450955704,11.5636582799333,8.56015317506516,0.474529061544512,6.75265714368445,4.52403375840485,4.77495532898762,5.45899443933536,0,0.648414149624083,0.796565093017469,4.74169752382704,16.4517858158009,3.38123207019241,2.44381593414377,3.49114476901726,1.82353131714828,0,0,0,0,0,0.500535317148282,1.96558995113203,0.449724224769707,0.202860121388503,0.241177159752417,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0.184753190166605,24.633883530163,3.42226450528254,2.8856664581782,0.234690248288502,1.50755631697634,0.476087281772027,0.780534591431195,0.945810864637146,0.44292937929755,0.637819074629948,0.655453258862952,0.518054945597687,0,0,0,0,0,1412.36354012261,1334.68947522542,0,0,55.2139383978449,56.6136179230126,48.0394176944142,16.010909462821,21.1658740378274,15.0030561318081,26.3126956088681,27.179794785752,20.9502522311657,99.930929407182,0,40.7770232398015,19.220661203722,0,0,12.3818124439041,5.74414758233027,2.64047111658257,1.18120757152309,2.45948118355142,2.58428293168221,1.45413491791002,2.49548164869305,1.26414703174326,0,0,3.06395645178409,37.6327686525438,82.9189163047456,72.8745919107414,39.9015525695116,89.3627776186374,213.090981679747,123.308304391413,0.938686832254841,0,23.376010193826,0,0.807322133479528,0.542816324353403,0.238744688006273,0.164140899745061,0.582961673259701,2117.00067305399,0,0.82554747185289,0.185194527369712,0,0,0,0,0,0,0,19.6128316020304,6.50622294805916,7.02034715341708,5.22720740036172,5.67742665740062,7.8221320903196,5.78574190077352,1.30877970992015,5.70305882483889,0,0,0,0.330916980914195,0.388902376688095,1.03327858782185,0.844780627453891,0.352071715937262,0.5208175393758,0,0,0,0,4.66267995167378,2.46506297195585,0.129920822977795,1.25318686967237,0.596044064343795,0.360586348559907,1.32920574457119,0.100966449948148,0.0762068066549998,0.100826185136841,0.292373642219257,0.288635524920988,0.233753804363138,0.453460767230423,4.21773311410723,6.54911153249173,1.00730769818447,11.9777548299958,0,0,1.71494703263253,0,477.780058854038,482.420847859521,479.513544748775,490.984541955915,363.09373547844,363.344464644446,338.186272616135,346.74732648265,411.000164948674,400.746481295909,157.756768327949,112.12598942569,83.4887332137716,47.4058098283173,72.3165411066539,73.9050903969057,60.0066165064361,51.5087643097236,63.5420034991794,55.3406893762716,64.8907007719014,51.4949911983988,49.5363574515678,56.5342095734996,51.8642284669188,55.2500681888365,55.3927078016409,54.2074909503011,55.2195107076431,66.5339119007476,61.7164654293748,50.4031289492518,55.3171960677785,64.8245018180185,54.1128937388151,60.2456008188737,56.8905995634323,43.9326418101198,50.2475221229689,62.286792154009,66.79151520391,57.4281132249535,38.8769491011205,50.6643470678109,42.0536411938888,81.4382484077704,48.8917061650904,47.4865029446739,89.9055160723564,80.0746851403841,80.6900067959067|short_description=p1@Nefl}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18039 | |||
|HGNC= | |||
|MCL_coexpression_id=464 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P08551 | |||
|association_with_transcript=0bp_to_ENSMUST00000022639_5end | |||
|cluster_id=chr14:68701910..68701927,+ | |||
|description=CAGE_peak_1_at_Nefl_5end | |||
|id=chr14:68701910..68701927,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.62e-12!33;CL:0000047!2.62e-12!33;CL:0000031!2.62e-12!33;CL:0000404!2.62e-12!33;CL:0000117!5.38e-11!23;CL:0000337!5.38e-11!23;CL:0000221!6.37e-09!44;CL:0000133!6.37e-09!44;CL:0002319!1.39e-08!43;CL:0000393!1.25e-07!39;CL:0000211!1.25e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.80e-13,33;CL:0000047,2.80e-13,33;CL:0000031,2.80e-13,33;CL:0000404,2.80e-13,33;CL:0000117,7.55e-12,23;CL:0000337,7.55e-12,23;CL:0000221,1.43e-09,44;CL:0000133,1.43e-09,44;CL:0002319,3.34e-09,43;CL:0000393,5.33e-09,39;CL:0000211,5.33e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.90e-25!71;UBERON:0003075!1.90e-25!71;UBERON:0007284!1.90e-25!71;UBERON:0004121!1.89e-24!102;UBERON:0000924!1.89e-24!102;UBERON:0006601!1.89e-24!102;UBERON:0000073!2.41e-24!75;UBERON:0001016!2.41e-24!75;UBERON:0001017!9.37e-24!73;UBERON:0005743!9.37e-24!73;UBERON:0000033!5.59e-21!63;UBERON:0001049!2.25e-19!52;UBERON:0005068!2.25e-19!52;UBERON:0006241!2.25e-19!52;UBERON:0007135!2.25e-19!52;UBERON:0003056!7.51e-18!49;UBERON:0000955!1.18e-17!50;UBERON:0006238!1.18e-17!50;UBERON:0002616!3.56e-17!49;UBERON:0003080!3.97e-14!40;UBERON:0002780!1.63e-13!39;UBERON:0001890!1.63e-13!39;UBERON:0006240!1.63e-13!39;UBERON:0002020!2.88e-13!34;UBERON:0007811!2.12e-10!86;UBERON:0000153!3.79e-10!94;UBERON:0002791!5.14e-10!29;UBERON:0003528!5.14e-10!29;UBERON:0001893!5.14e-10!29;UBERON:0002021!2.07e-07!10;UBERON:0000411!2.07e-07!10;UBERON:0001950!2.07e-07!10;UBERON:0000468!3.00e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.95e-26,64;UBERON:0003075,1.95e-26,64;UBERON:0007284,1.95e-26,64;UBERON:0001016,2.18e-26,75;UBERON:0001017,9.59e-26,73;UBERON:0004121,3.35e-24,95;UBERON:0000924,3.35e-24,95;UBERON:0006601,3.35e-24,95;UBERON:0000073,1.59e-22,54;UBERON:0010371,1.18e-21,73;UBERON:0001049,4.49e-21,52;UBERON:0005068,4.49e-21,52;UBERON:0006241,4.49e-21,52;UBERON:0007135,4.49e-21,52;UBERON:0003056,1.02e-19,49;UBERON:0010314,2.85e-18,92;UBERON:0000955,4.90e-17,47;UBERON:0006238,4.90e-17,47;UBERON:0002616,1.58e-16,46;UBERON:0003080,1.22e-15,40;UBERON:0002780,5.76e-15,39;UBERON:0001890,5.76e-15,39;UBERON:0006240,5.76e-15,39;UBERON:0002020,1.02e-14,34;UBERON:0003528,3.86e-11,29;UBERON:0002791,3.86e-11,29;UBERON:0001893,3.86e-11,29;UBERON:0002021,6.08e-08,10;UBERON:0000411,6.08e-08,10;UBERON:0001950,6.08e-08,10;UBERON:0000956,4.03e-07,21;UBERON:0001869,4.03e-07,21;UBERON:0000203,4.03e-07,21;UBERON:0002619,9.36e-07,17 | |||
|phase1_expression=64.3798365361272,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,64.7179438049641,0,0,0,0.22940928106717,0,0,0.215471232685889,0.380046838912748,0.252030129759931,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0,1.53985063787899,1.43752564364972,0,0,0,0,0,0,221.53652464126,212.654373667357,238.320607718323,4.74382344896785,2.66788438833342,0.449949858640699,0.988866362566974,2.8419204597844,0.299600110518405,0,3.42175720617976,6.61529097825284,6.94072372459561,1419.97104347131,979.551979120406,33.4399881856825,29.5204050736168,28.4957823849107,504.3307349772,643.16112193509,697.680874049858,152.460548616104,159.09701222459,130.749256009747,954.805856584723,223.416756182577,345.629636471144,883.296499250056,841.701376884297,701.980312978082,35.1369537065974,57.9633866019045,0,0,0,2.69851595818909,0.649776417447669,0,30.4764391685902,0,0,0,70.2808664685636,0,0,0,0,0,0,10.7332846935916,0.258937883647172,2.9688427812965,93.3351058001811,59.9796992274918,44.9700219649314,39.3386091842345,33.865547655083,1.88499886994513,0,0.722996784599558,0,1.45590164952668,0,0,3.72783522436244,141.120344159566,143.889887580844,0,0,0,0,478.131720980194,304.237900874387,45.9894928733084,336.00241093167,350.330176542553,465.653007857974,388.56782504728,10.3876151127323,0,0,40.1943944743165,35.0023991569673,160.471668894564,139.548150599146,106.849715845522,95.659317806767,84.8112828285706,99.3238280333126,213.430280859688,0.215567992932842,1.89106080167819,2.99116911078713,7.67185063496512,6.95118123063995,4.179025998266,4.7329891373827,3.98068533636986,0,0,0,1.03562886267751,7.03578179943289,1.62055855314913,1.89395788468168,0.787056926989615,2.1597395804233,0.465067889500816,0.804820204198858,0.233530684734339,0.658239399653922,0.32833492815819,0.405344047729279,0,0.219550115291051,0.939444931322602,347.398995027938,33.1352851861296,0.660837565967596,1.05780226665418,18.7693660471006,22.0624838267417,17.1393723558384,8.26902450955704,11.5636582799333,8.56015317506516,0.474529061544512,6.75265714368445,4.52403375840485,4.77495532898762,5.45899443933536,0,0.648414149624083,0.796565093017469,4.74169752382704,16.4517858158009,3.38123207019241,2.44381593414377,3.49114476901726,1.82353131714828,0,0,0,0,0,0.500535317148282,1.96558995113203,0.449724224769707,0.202860121388503,0.241177159752417,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0.184753190166605,24.633883530163,3.42226450528254,2.8856664581782,0.234690248288502,1.50755631697634,0.476087281772027,0.780534591431195,0.945810864637146,0.44292937929755,0.637819074629948,0.655453258862952,0.518054945597687,0,0,0,0,0,1412.36354012261,1334.68947522542,0,0,55.2139383978449,56.6136179230126,48.0394176944142,16.010909462821,21.1658740378274,15.0030561318081,26.3126956088681,27.179794785752,20.9502522311657,99.930929407182,0,40.7770232398015,19.220661203722,0,0,12.3818124439041,5.74414758233027,2.64047111658257,1.18120757152309,2.45948118355142,2.58428293168221,1.45413491791002,2.49548164869305,1.26414703174326,0,0,3.06395645178409,37.6327686525438,82.9189163047456,72.8745919107414,39.9015525695116,89.3627776186374,213.090981679747,123.308304391413,0.938686832254841,0,23.376010193826,0,0.807322133479528,0.542816324353403,0.238744688006273,0.164140899745061,0.582961673259701,2117.00067305399,0,0.82554747185289,0.185194527369712,0,0,0,0,0,0,0,19.6128316020304,6.50622294805916,7.02034715341708,5.22720740036172,5.67742665740062,7.8221320903196,5.78574190077352,1.30877970992015,5.70305882483889,0,0,0,0.330916980914195,0.388902376688095,1.03327858782185,0.844780627453891,0.352071715937262,0.5208175393758,0,0,0,0,4.66267995167378,2.46506297195585,0.129920822977795,1.25318686967237,0.596044064343795,0.360586348559907,1.32920574457119,0.100966449948148,0.0762068066549998,0.100826185136841,0.292373642219257,0.288635524920988,0.233753804363138,0.453460767230423,4.21773311410723,6.54911153249173,1.00730769818447,11.9777548299958,0,0,1.71494703263253,0,477.780058854038,482.420847859521,479.513544748775,490.984541955915,363.09373547844,363.344464644446,338.186272616135,346.74732648265,411.000164948674,400.746481295909,157.756768327949,112.12598942569,83.4887332137716,47.4058098283173,72.3165411066539,73.9050903969057,60.0066165064361,51.5087643097236,63.5420034991794,55.3406893762716,64.8907007719014,51.4949911983988,49.5363574515678,56.5342095734996,51.8642284669188,55.2500681888365,55.3927078016409,54.2074909503011,55.2195107076431,66.5339119007476,61.7164654293748,50.4031289492518,55.3171960677785,64.8245018180185,54.1128937388151,60.2456008188737,56.8905995634323,43.9326418101198,50.2475221229689,62.286792154009,66.79151520391,57.4281132249535,38.8769491011205,50.6643470678109,42.0536411938888,81.4382484077704,48.8917061650904,47.4865029446739,89.9055160723564,80.0746851403841,80.6900067959067 | |||
|short_description=p1@Nefl | |||
}} |
Revision as of 17:08, 4 August 2015
Short description: | p1@Nefl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nefl_5end |
Coexpression cluster: | MCL_coexpression_mm9:464 |
Association with transcript: | 0bp_to_ENSMUST00000022639_5end |
EntrezGene: | 18039 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.80e-13 | 33 |
neuronal stem cell | 2.80e-13 | 33 |
neuroblast | 2.80e-13 | 33 |
electrically signaling cell | 2.80e-13 | 33 |
CNS neuron (sensu Vertebrata) | 7.55e-12 | 23 |
neuroblast (sensu Vertebrata) | 7.55e-12 | 23 |
ectodermal cell | 1.43e-09 | 44 |
neurectodermal cell | 1.43e-09 | 44 |
neural cell | 3.34e-09 | 43 |
electrically responsive cell | 5.33e-09 | 39 |
electrically active cell | 5.33e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.95e-26 | 64 |
neural plate | 1.95e-26 | 64 |
presumptive neural plate | 1.95e-26 | 64 |
nervous system | 2.18e-26 | 75 |
central nervous system | 9.59e-26 | 73 |
ectoderm-derived structure | 3.35e-24 | 95 |
ectoderm | 3.35e-24 | 95 |
presumptive ectoderm | 3.35e-24 | 95 |
regional part of nervous system | 1.59e-22 | 54 |
ecto-epithelium | 1.18e-21 | 73 |
neural tube | 4.49e-21 | 52 |
neural rod | 4.49e-21 | 52 |
future spinal cord | 4.49e-21 | 52 |
neural keel | 4.49e-21 | 52 |
pre-chordal neural plate | 1.02e-19 | 49 |
structure with developmental contribution from neural crest | 2.85e-18 | 92 |
brain | 4.90e-17 | 47 |
future brain | 4.90e-17 | 47 |
regional part of brain | 1.58e-16 | 46 |
anterior neural tube | 1.22e-15 | 40 |
regional part of forebrain | 5.76e-15 | 39 |
forebrain | 5.76e-15 | 39 |
future forebrain | 5.76e-15 | 39 |
gray matter | 1.02e-14 | 34 |
brain grey matter | 3.86e-11 | 29 |
regional part of telencephalon | 3.86e-11 | 29 |
telencephalon | 3.86e-11 | 29 |
occipital lobe | 6.08e-08 | 10 |
visual cortex | 6.08e-08 | 10 |
neocortex | 6.08e-08 | 10 |
cerebral cortex | 4.03e-07 | 21 |
cerebral hemisphere | 4.03e-07 | 21 |
pallium | 4.03e-07 | 21 |
regional part of cerebral cortex | 9.36e-07 | 17 |