FFCP PHASE1:Mm9::chr1:124253801..124253823,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=174|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:124253801..124253823,-|id=chr1:124253801..124253823,-|ontology_enrichment_celltype=CL:0002319!4.09e-14!43;CL:0000221!4.69e-13!44;CL:0000133!4.69e-13!44;CL:0000055!1.23e-12!50;CL:0002321!1.54e-12!70;CL:0000220!1.54e-12!70;CL:0000540!6.64e-12!33;CL:0000047!6.64e-12!33;CL:0000031!6.64e-12!33;CL:0000404!6.64e-12!33;CL:0000393!4.17e-10!39;CL:0000211!4.17e-10!39;CL:0000117!6.19e-09!23;CL:0000337!6.19e-09!23;CL:0000548!1.18e-08!115;CL:0000004!1.18e-08!115;CL:0000255!1.18e-08!115;CL:0002371!1.56e-07!118;CL:0000723!5.12e-07!91;CL:0000048!5.12e-07!91|ontology_enrichment_celltype_v019_2=CL:0002319,4.18e-14,43;CL:0000221,4.79e-13,44;CL:0000133,4.79e-13,44;CL:0002321,1.56e-12,70;CL:0000540,6.79e-12,33;CL:0000047,6.79e-12,33;CL:0000031,6.79e-12,33;CL:0000404,6.79e-12,33;CL:0000393,4.25e-10,39;CL:0000211,4.25e-10,39;CL:0000117,6.19e-09,23;CL:0000337,6.19e-09,23;CL:0000723,5.10e-07,91;CL:0000048,5.10e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.86e-16!73;UBERON:0005743!6.86e-16!73;UBERON:0000073!2.27e-14!75;UBERON:0001016!2.27e-14!75;UBERON:0001049!1.59e-09!52;UBERON:0005068!1.59e-09!52;UBERON:0006241!1.59e-09!52;UBERON:0007135!1.59e-09!52;UBERON:0002020!2.29e-09!34;UBERON:0002616!2.83e-09!49;UBERON:0000955!1.46e-08!50;UBERON:0006238!1.46e-08!50;UBERON:0002780!2.15e-08!39;UBERON:0001890!2.15e-08!39;UBERON:0006240!2.15e-08!39;UBERON:0004121!2.44e-08!102;UBERON:0000924!2.44e-08!102;UBERON:0006601!2.44e-08!102;UBERON:0003080!4.16e-08!40;UBERON:0002346!6.52e-08!71;UBERON:0003075!6.52e-08!71;UBERON:0007284!6.52e-08!71;UBERON:0002791!9.12e-08!29;UBERON:0003528!9.12e-08!29;UBERON:0001893!9.12e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.98e-16,73;UBERON:0001016,2.31e-14,75;UBERON:0000073,6.94e-11,54;UBERON:0001049,1.59e-09,52;UBERON:0005068,1.59e-09,52;UBERON:0006241,1.59e-09,52;UBERON:0007135,1.59e-09,52;UBERON:0002020,2.29e-09,34;UBERON:0004121,1.04e-08,95;UBERON:0000924,1.04e-08,95;UBERON:0006601,1.04e-08,95;UBERON:0002346,1.65e-08,64;UBERON:0003075,1.65e-08,64;UBERON:0007284,1.65e-08,64;UBERON:0002780,2.15e-08,39;UBERON:0001890,2.15e-08,39;UBERON:0006240,2.15e-08,39;UBERON:0002616,2.21e-08,46;UBERON:0003080,4.15e-08,40;UBERON:0003528,9.12e-08,29;UBERON:0002791,9.12e-08,29;UBERON:0001893,9.12e-08,29;UBERON:0000955,1.07e-07,47;UBERON:0006238,1.07e-07,47|phase1_expression=0.80074423552397,5.93258192986914,10.4649825059593,16.3330674105688,30.5546395267272,1.6787927191189,9.81173090501208,9.03863264091034,6.61706994112834,5.61754863172784,1.36974374580404,2.71225340584144,4.28001824828014,4.98296293788285,16.6554880907831,2.22722794128809,20.2872944657163,4.10100814965709,2.05671650408608,10.1853516431527,8.33424243480484,4.66667470644161,2.08959831311148,2.07990149631429,4.5881856213434,10.3361753540704,2.58457197695445,1.939241094173,6.46079626151671,0,1.33038306393183,95.2546010189447,63.3516731212107,158.481681015439,5.48818077527422,2.1610503896604,7.55426618170766,1.67412652294763,0,4.71171369576418,4.70585190424811,4.09827290975067,0.971020706062307,4.15459499319405,5.87986201073184,2.75320128242522,49.2906546939265,20.9304150125229,32.2938688619674,23.9148775861369,46.335505557995,23.0004102983955,4.02678254538567,16.6833292662609,5.04140698713696,5.65970759279083,9.16907007804022,20.1112115988203,21.4455448511174,14.8117474196169,15.2119536841483,34.9009868031206,24.9002542911119,31.496490104849,48.4544517657817,53.2860086209575,45.5392167987975,33.0427742576537,15.9682002955056,20.6559085647487,23.7667206327062,20.8525218614777,13.9147180799517,14.0864419097197,16.6771119571731,18.3843757322004,39.6417171597799,12.5133591323484,12.595735727012,17.4089899803856,15.9188499868193,20.8365348222704,17.588528937087,60.7783618834214,20.4749652020926,24.4541725943144,12.6710795911202,18.0807462450542,2.42323818666189,2.04043212288321,5.50742528533188,12.9063581547208,61.1974200336975,72.3202276794675,139.052153333801,58.691522209751,10.5333315098814,5.28333999991979,18.9643783360094,8.48014978824817,1.54927761754349,17.9657068380045,28.028576367731,106.660005473,4.97929394325792,5.82727690592727,2.02209778005913,16.4424786795446,14.7594593678888,2.82040064223167,14.9197381018877,15.2232739156071,7.84092690670599,8.13902258984162,4.11560474974967,4.52399728786832,5.43828929015623,11.1341504828332,17.6922110389975,4.69123864847487,6.18356251689102,10.1823803158397,7.45567044872489,3.51336956413857,12.5668024088073,12.0064815948038,0.958520996047362,0.599902730993408,0.889491589511453,5.39246301857362,10.5225138648284,3.64397621127307,4.34560800480691,5.11430914660661,6.2336413367868,6.48965052271031,3.46253837091075,5.97153458928446,4.29628689337247,5.6819301089348,6.50602214813519,5.0578462975364,5.22180176435513,9.0422890701429,3.81004395247436,2.562274405697,4.2165776051878,7.24369438069244,6.89817577385095,3.21480336285293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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=174 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:124253801..124253823,- | |||
|description=CAGE_peak_at_chr1:124253801..124253823,- | |||
|id=chr1:124253801..124253823,- | |||
|ontology_enrichment_celltype=CL:0002319!4.09e-14!43;CL:0000221!4.69e-13!44;CL:0000133!4.69e-13!44;CL:0000055!1.23e-12!50;CL:0002321!1.54e-12!70;CL:0000220!1.54e-12!70;CL:0000540!6.64e-12!33;CL:0000047!6.64e-12!33;CL:0000031!6.64e-12!33;CL:0000404!6.64e-12!33;CL:0000393!4.17e-10!39;CL:0000211!4.17e-10!39;CL:0000117!6.19e-09!23;CL:0000337!6.19e-09!23;CL:0000548!1.18e-08!115;CL:0000004!1.18e-08!115;CL:0000255!1.18e-08!115;CL:0002371!1.56e-07!118;CL:0000723!5.12e-07!91;CL:0000048!5.12e-07!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.18e-14,43;CL:0000221,4.79e-13,44;CL:0000133,4.79e-13,44;CL:0002321,1.56e-12,70;CL:0000540,6.79e-12,33;CL:0000047,6.79e-12,33;CL:0000031,6.79e-12,33;CL:0000404,6.79e-12,33;CL:0000393,4.25e-10,39;CL:0000211,4.25e-10,39;CL:0000117,6.19e-09,23;CL:0000337,6.19e-09,23;CL:0000723,5.10e-07,91;CL:0000048,5.10e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.86e-16!73;UBERON:0005743!6.86e-16!73;UBERON:0000073!2.27e-14!75;UBERON:0001016!2.27e-14!75;UBERON:0001049!1.59e-09!52;UBERON:0005068!1.59e-09!52;UBERON:0006241!1.59e-09!52;UBERON:0007135!1.59e-09!52;UBERON:0002020!2.29e-09!34;UBERON:0002616!2.83e-09!49;UBERON:0000955!1.46e-08!50;UBERON:0006238!1.46e-08!50;UBERON:0002780!2.15e-08!39;UBERON:0001890!2.15e-08!39;UBERON:0006240!2.15e-08!39;UBERON:0004121!2.44e-08!102;UBERON:0000924!2.44e-08!102;UBERON:0006601!2.44e-08!102;UBERON:0003080!4.16e-08!40;UBERON:0002346!6.52e-08!71;UBERON:0003075!6.52e-08!71;UBERON:0007284!6.52e-08!71;UBERON:0002791!9.12e-08!29;UBERON:0003528!9.12e-08!29;UBERON:0001893!9.12e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.98e-16,73;UBERON:0001016,2.31e-14,75;UBERON:0000073,6.94e-11,54;UBERON:0001049,1.59e-09,52;UBERON:0005068,1.59e-09,52;UBERON:0006241,1.59e-09,52;UBERON:0007135,1.59e-09,52;UBERON:0002020,2.29e-09,34;UBERON:0004121,1.04e-08,95;UBERON:0000924,1.04e-08,95;UBERON:0006601,1.04e-08,95;UBERON:0002346,1.65e-08,64;UBERON:0003075,1.65e-08,64;UBERON:0007284,1.65e-08,64;UBERON:0002780,2.15e-08,39;UBERON:0001890,2.15e-08,39;UBERON:0006240,2.15e-08,39;UBERON:0002616,2.21e-08,46;UBERON:0003080,4.15e-08,40;UBERON:0003528,9.12e-08,29;UBERON:0002791,9.12e-08,29;UBERON:0001893,9.12e-08,29;UBERON:0000955,1.07e-07,47;UBERON:0006238,1.07e-07,47 | |||
|phase1_expression=0.80074423552397,5.93258192986914,10.4649825059593,16.3330674105688,30.5546395267272,1.6787927191189,9.81173090501208,9.03863264091034,6.61706994112834,5.61754863172784,1.36974374580404,2.71225340584144,4.28001824828014,4.98296293788285,16.6554880907831,2.22722794128809,20.2872944657163,4.10100814965709,2.05671650408608,10.1853516431527,8.33424243480484,4.66667470644161,2.08959831311148,2.07990149631429,4.5881856213434,10.3361753540704,2.58457197695445,1.939241094173,6.46079626151671,0,1.33038306393183,95.2546010189447,63.3516731212107,158.481681015439,5.48818077527422,2.1610503896604,7.55426618170766,1.67412652294763,0,4.71171369576418,4.70585190424811,4.09827290975067,0.971020706062307,4.15459499319405,5.87986201073184,2.75320128242522,49.2906546939265,20.9304150125229,32.2938688619674,23.9148775861369,46.335505557995,23.0004102983955,4.02678254538567,16.6833292662609,5.04140698713696,5.65970759279083,9.16907007804022,20.1112115988203,21.4455448511174,14.8117474196169,15.2119536841483,34.9009868031206,24.9002542911119,31.496490104849,48.4544517657817,53.2860086209575,45.5392167987975,33.0427742576537,15.9682002955056,20.6559085647487,23.7667206327062,20.8525218614777,13.9147180799517,14.0864419097197,16.6771119571731,18.3843757322004,39.6417171597799,12.5133591323484,12.595735727012,17.4089899803856,15.9188499868193,20.8365348222704,17.588528937087,60.7783618834214,20.4749652020926,24.4541725943144,12.6710795911202,18.0807462450542,2.42323818666189,2.04043212288321,5.50742528533188,12.9063581547208,61.1974200336975,72.3202276794675,139.052153333801,58.691522209751,10.5333315098814,5.28333999991979,18.9643783360094,8.48014978824817,1.54927761754349,17.9657068380045,28.028576367731,106.660005473,4.97929394325792,5.82727690592727,2.02209778005913,16.4424786795446,14.7594593678888,2.82040064223167,14.9197381018877,15.2232739156071,7.84092690670599,8.13902258984162,4.11560474974967,4.52399728786832,5.43828929015623,11.1341504828332,17.6922110389975,4.69123864847487,6.18356251689102,10.1823803158397,7.45567044872489,3.51336956413857,12.5668024088073,12.0064815948038,0.958520996047362,0.599902730993408,0.889491589511453,5.39246301857362,10.5225138648284,3.64397621127307,4.34560800480691,5.11430914660661,6.2336413367868,6.48965052271031,3.46253837091075,5.97153458928446,4.29628689337247,5.6819301089348,6.50602214813519,5.0578462975364,5.22180176435513,9.0422890701429,3.81004395247436,2.562274405697,4.2165776051878,7.24369438069244,6.89817577385095,3.21480336285293,5.27853372491847,2.41115305670332,15.2925987074079,1.39300866608867,4.7329891373827,8.55847347319521,0,0,3.40996199274711,5.59239585845855,5.15957331958412,11.1638478105829,6.15536312521547,5.70616272067471,6.63348585415727,7.90615412151387,4.82892122519315,4.67061369468678,3.62031669809657,6.23836363500562,2.43206428637567,4.67839959761063,10.5384055339704,9.5286557319864,7.57043814830858,5.35103984372279,13.2167513193519,8.19796756656987,5.97207101498655,12.0763069367428,4.25262622362908,7.05892336181699,3.7804267453628,2.66315876557583,64.0614233085091,7.5761519173045,9.80207314321051,2.38747766449381,4.48417400373976,70.1079138750293,13.6166971421057,5.77509692437665,1.51734320762465,9.82537208443668,6.76246414038483,4.68398054044223,6.0125271021964,3.0158402552837,3.03535378196435,4.87113488332687,3.767969468193,6.66344685177723,12.1545577105731,1.00107063429656,1.96558995113203,2.24862112384854,2.43432145666204,2.41177159752417,6.62027214631691,3.45235364940973,9.72811360650212,7.4131581560782,294.724823381077,6.69853705803306,9.36113019343682,4.54641980304801,8.61107584905178,10.1313139486307,6.46636165583116,5.87423376488503,4.88894929326078,13.2401166904647,7.97946844180907,3.68513766371995,3.33261097240419,5.65887578787617,3.62560831444239,6.86540537911202,3.02964060449226,14.2561083802692,7.08008425650172,9.83613598354279,15.0791283939272,20.668415985111,3.44234991113325,4.96686143348518,8.66973185934077,5.15731421005694,37.0492976551286,13.8859009962405,29.0267561862956,30.4542220551378,19.8189525914175,21.7461606136822,29.1866263047936,17.5507449089076,25.5030742055183,28.9333299332199,28.8560077900962,1.92792789853084,3.26462195979018,5.52003371368491,3.09485222771795,3.79431282836832,27.8764790513922,18.9368896200886,5.13950046840077,5.65815239267694,9.7449624650655,8.30074899448604,7.23599220871019,12.3601468022352,9.9819265947722,4.10847785316561,45.3300016872495,29.9093075419742,8.17055053809091,9.18311579559682,11.3835641728824,10.7168517515796,9.22169214939823,8.38333442729732,10.2020392773315,33.4911444026059,3.52007562095566,6.14313005505079,11.688005096913,16.158852788265,3.71368181400583,1.74907482291652,3.81991500810037,4.59594519286172,30.3140070095045,4.45020724825223,7.86006051670122,4.12773735926445,7.03739204004904,4.33247451110789,3.2806614653046,6.40578884978263,1.69978429993855,0.279902904647316,0.414599921413271,4.77335309007557,4.27053591334533,4.87966721104437,5.94029374519907,7.52717865652087,12.22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| |||
|short_description=p@chr1:124253801..124253823,- | |||
}} |
Latest revision as of 16:19, 4 August 2015
Short description: | p@chr1:124253801..124253823, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:124253801..124253823, - |
Coexpression cluster: | MCL_coexpression_mm9:174 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.18e-14 | 43 |
ectodermal cell | 4.79e-13 | 44 |
neurectodermal cell | 4.79e-13 | 44 |
embryonic cell | 1.56e-12 | 70 |
neuron | 6.79e-12 | 33 |
neuronal stem cell | 6.79e-12 | 33 |
neuroblast | 6.79e-12 | 33 |
electrically signaling cell | 6.79e-12 | 33 |
electrically responsive cell | 4.25e-10 | 39 |
electrically active cell | 4.25e-10 | 39 |
CNS neuron (sensu Vertebrata) | 6.19e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.19e-09 | 23 |
somatic stem cell | 5.10e-07 | 91 |
multi fate stem cell | 5.10e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.98e-16 | 73 |
nervous system | 2.31e-14 | 75 |
regional part of nervous system | 6.94e-11 | 54 |
neural tube | 1.59e-09 | 52 |
neural rod | 1.59e-09 | 52 |
future spinal cord | 1.59e-09 | 52 |
neural keel | 1.59e-09 | 52 |
gray matter | 2.29e-09 | 34 |
ectoderm-derived structure | 1.04e-08 | 95 |
ectoderm | 1.04e-08 | 95 |
presumptive ectoderm | 1.04e-08 | 95 |
neurectoderm | 1.65e-08 | 64 |
neural plate | 1.65e-08 | 64 |
presumptive neural plate | 1.65e-08 | 64 |
regional part of forebrain | 2.15e-08 | 39 |
forebrain | 2.15e-08 | 39 |
future forebrain | 2.15e-08 | 39 |
regional part of brain | 2.21e-08 | 46 |
anterior neural tube | 4.15e-08 | 40 |
brain grey matter | 9.12e-08 | 29 |
regional part of telencephalon | 9.12e-08 | 29 |
telencephalon | 9.12e-08 | 29 |
brain | 1.07e-07 | 47 |
future brain | 1.07e-07 | 47 |