FFCP PHASE1:Mm9::chr17:33229391..33229442,+: Difference between revisions
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{{FFCP|EntrezGene=240068|HGNC=|MCL_coexpression_id=1|UniProt=B8JK01|association_with_transcript=0bp_to_ENSMUST00000140829_5end|description=CAGE_peak_1_at_Zfp563_5end|id=chr17:33229391..33229442,+|ontology_enrichment_celltype=CL:0000540!4.72e-07!33;CL:0000047!4.72e-07!33;CL:0000031!4.72e-07!33;CL:0000404!4.72e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,4.71e-07,33;CL:0000047,4.71e-07,33;CL:0000031,4.71e-07,33;CL:0000404,4.71e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.11e-16!63;UBERON:0003056!4.06e-14!49;UBERON:0002346!5.83e-14!71;UBERON:0003075!5.83e-14!71;UBERON:0007284!5.83e-14!71;UBERON:0000955!1.84e-13!50;UBERON:0006238!1.84e-13!50;UBERON:0002616!7.51e-13!49;UBERON:0001049!1.44e-12!52;UBERON:0005068!1.44e-12!52;UBERON:0006241!1.44e-12!52;UBERON:0007135!1.44e-12!52;UBERON:0001017!2.10e-12!73;UBERON:0005743!2.10e-12!73;UBERON:0004121!4.84e-12!102;UBERON:0000924!4.84e-12!102;UBERON:0006601!4.84e-12!102;UBERON:0000073!2.58e-11!75;UBERON:0001016!2.58e-11!75;UBERON:0000153!3.26e-11!94;UBERON:0003080!4.78e-11!40;UBERON:0002020!4.84e-11!34;UBERON:0002780!1.80e-10!39;UBERON:0001890!1.80e-10!39;UBERON:0006240!1.80e-10!39;UBERON:0002791!1.88e-10!29;UBERON:0003528!1.88e-10!29;UBERON:0001893!1.88e-10!29;UBERON:0007811!3.18e-10!86;UBERON:0000468!2.81e-09!333;UBERON:0000922!1.43e-07!328;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10;UBERON:0000956!4.25e-07!21;UBERON:0001869!4.25e-07!21;UBERON:0000203!4.25e-07!21;UBERON:0004111!8.73e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.70e-16,64;UBERON:0003075,6.70e-16,64;UBERON:0007284,6.70e-16,64;UBERON:0010371,4.29e-15,73;UBERON:0003056,4.30e-14,49;UBERON:0000073,1.42e-13,54;UBERON:0004121,3.35e-13,95;UBERON:0000924,3.35e-13,95;UBERON:0006601,3.35e-13,95;UBERON:0001049,1.60e-12,52;UBERON:0005068,1.60e-12,52;UBERON:0006241,1.60e-12,52;UBERON:0007135,1.60e-12,52;UBERON:0001017,2.53e-12,73;UBERON:0000955,5.03e-12,47;UBERON:0006238,5.03e-12,47;UBERON:0002616,1.97e-11,46;UBERON:0001016,3.07e-11,75;UBERON:0003080,5.06e-11,40;UBERON:0002020,5.14e-11,34;UBERON:0010314,1.06e-10,92;UBERON:0002780,1.90e-10,39;UBERON:0001890,1.90e-10,39;UBERON:0006240,1.90e-10,39;UBERON:0003528,2.00e-10,29;UBERON:0002791,2.00e-10,29;UBERON:0001893,2.00e-10,29;UBERON:0002021,2.41e-07,10;UBERON:0000411,2.41e-07,10;UBERON:0001950,2.41e-07,10;UBERON:0000956,4.51e-07,21;UBERON:0001869,4.51e-07,21;UBERON:0000203,4.51e-07,21;UBERON:0004111,8.95e-07,122|phase1_expression=5.2849119544582,2.44282785347553,3.18499467572675,8.16653370528441,1.00179145989269,3.52546471014969,2.80335168714631,4.77756296733832,1.83025338797167,3.27690336850791,1.71217968225505,1.91453181588807,3.76641605848653,4.45844052336887,0.999329285446988,2.42970320867791,1.39912375625629,5.99378114180652,5.75880621144103,5.51706547337439,5.18764069921526,3.77305614563364,4.96279599363977,5.27974995218242,2.75291137280604,5.7423196411502,3.01533397311352,3.66301095566011,5.89072600314759,4.28451220591882,2.21730510655305,1.90509202037889,1.23012957516914,0,3.17736781726402,3.15845826181135,2.85837098767317,1.67412652294763,3.1253413780952,1.0470474879476,1.76469446409304,2.04913645487534,2.91306211818692,5.28766635497425,5.98123894195136,4.40512205188036,3.12956537739216,0.872100625521786,0.659058548203415,0.777719596297134,1.1198913730029,1.43752564364972,1.17447824240415,1.45072428402269,2.68875039313971,3.08711323243136,4.58453503902011,3.6097046459421,6.67644320836673,7.40587370980846,5.07065122804943,0.338844532069132,0,0,0.988866362566974,0.7104801149461,0.898800331555214,0.768436610643109,8.50254820929517,6.48028503992115,5.67877395648731,3.71346279724945,4.19650227808066,8.57435594504678,5.46319184803947,7.35375029288017,8.8092704799511,9.06580100404833,10.752457327937,6.72620067423989,7.86793734980723,10.4182674111352,7.81712397203867,10.6924895906019,9.62628960993904,13.5529149317887,11.3897344639282,12.3023634244698,2.42323818666189,2.56943304363071,5.2175607966302,3.44169550792555,0,3.77792234146472,4.54843492213368,5.82434953226536,4.91555470461132,4.60161870960756,1.81850203222008,4.24007489412408,4.78867627240714,12.8326477414318,10.1922095882658,14.2213340630666,2.16491041011214,1.01343946190039,1.51657333504435,3.65388415100992,8.02707439306232,7.27366481417641,3.64319186208885,4.26251669636998,3.68984795609694,4.52167921657868,4.9387256996996,3.51866455723091,2.22475470960936,8.38676270135488,2.65383165584962,2.26473589926373,4.63767188766826,3.39412677194655,5.59175283654366,14.0534782565543,11.51956887474,5.36459815938042,0.479260498023681,0.599902730993408,1.01656181658452,14.0803201040533,9.15001205637253,16.4607201267852,10.081810571152,10.2286182932132,11.8439185398949,9.89671704713322,5.39748628406676,4.22983700074316,4.54900965180614,11.5743020737561,6.11566081924707,6.20735681970377,7.56260945182467,7.83665052745718,7.27990540919208,9.09607414022434,7.87094486301722,12.9351685369508,4.742495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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:240068 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B8JK01 | |||
|association_with_transcript=0bp_to_ENSMUST00000140829_5end | |||
|cluster_id=chr17:33229391..33229442,+ | |||
|description=CAGE_peak_1_at_Zfp563_5end | |||
|id=chr17:33229391..33229442,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.72e-07!33;CL:0000047!4.72e-07!33;CL:0000031!4.72e-07!33;CL:0000404!4.72e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.71e-07,33;CL:0000047,4.71e-07,33;CL:0000031,4.71e-07,33;CL:0000404,4.71e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.11e-16!63;UBERON:0003056!4.06e-14!49;UBERON:0002346!5.83e-14!71;UBERON:0003075!5.83e-14!71;UBERON:0007284!5.83e-14!71;UBERON:0000955!1.84e-13!50;UBERON:0006238!1.84e-13!50;UBERON:0002616!7.51e-13!49;UBERON:0001049!1.44e-12!52;UBERON:0005068!1.44e-12!52;UBERON:0006241!1.44e-12!52;UBERON:0007135!1.44e-12!52;UBERON:0001017!2.10e-12!73;UBERON:0005743!2.10e-12!73;UBERON:0004121!4.84e-12!102;UBERON:0000924!4.84e-12!102;UBERON:0006601!4.84e-12!102;UBERON:0000073!2.58e-11!75;UBERON:0001016!2.58e-11!75;UBERON:0000153!3.26e-11!94;UBERON:0003080!4.78e-11!40;UBERON:0002020!4.84e-11!34;UBERON:0002780!1.80e-10!39;UBERON:0001890!1.80e-10!39;UBERON:0006240!1.80e-10!39;UBERON:0002791!1.88e-10!29;UBERON:0003528!1.88e-10!29;UBERON:0001893!1.88e-10!29;UBERON:0007811!3.18e-10!86;UBERON:0000468!2.81e-09!333;UBERON:0000922!1.43e-07!328;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10;UBERON:0000956!4.25e-07!21;UBERON:0001869!4.25e-07!21;UBERON:0000203!4.25e-07!21;UBERON:0004111!8.73e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.70e-16,64;UBERON:0003075,6.70e-16,64;UBERON:0007284,6.70e-16,64;UBERON:0010371,4.29e-15,73;UBERON:0003056,4.30e-14,49;UBERON:0000073,1.42e-13,54;UBERON:0004121,3.35e-13,95;UBERON:0000924,3.35e-13,95;UBERON:0006601,3.35e-13,95;UBERON:0001049,1.60e-12,52;UBERON:0005068,1.60e-12,52;UBERON:0006241,1.60e-12,52;UBERON:0007135,1.60e-12,52;UBERON:0001017,2.53e-12,73;UBERON:0000955,5.03e-12,47;UBERON:0006238,5.03e-12,47;UBERON:0002616,1.97e-11,46;UBERON:0001016,3.07e-11,75;UBERON:0003080,5.06e-11,40;UBERON:0002020,5.14e-11,34;UBERON:0010314,1.06e-10,92;UBERON:0002780,1.90e-10,39;UBERON:0001890,1.90e-10,39;UBERON:0006240,1.90e-10,39;UBERON:0003528,2.00e-10,29;UBERON:0002791,2.00e-10,29;UBERON:0001893,2.00e-10,29;UBERON:0002021,2.41e-07,10;UBERON:0000411,2.41e-07,10;UBERON:0001950,2.41e-07,10;UBERON:0000956,4.51e-07,21;UBERON:0001869,4.51e-07,21;UBERON:0000203,4.51e-07,21;UBERON:0004111,8.95e-07,122 | |||
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| |||
|short_description=p1@Zfp563 | |||
}} |
Revision as of 15:37, 4 August 2015
Short description: | p1@Zfp563 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfp563_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000140829_5end |
EntrezGene: | 240068 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.71e-07 | 33 |
neuronal stem cell | 4.71e-07 | 33 |
neuroblast | 4.71e-07 | 33 |
electrically signaling cell | 4.71e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.70e-16 | 64 |
neural plate | 6.70e-16 | 64 |
presumptive neural plate | 6.70e-16 | 64 |
ecto-epithelium | 4.29e-15 | 73 |
pre-chordal neural plate | 4.30e-14 | 49 |
regional part of nervous system | 1.42e-13 | 54 |
ectoderm-derived structure | 3.35e-13 | 95 |
ectoderm | 3.35e-13 | 95 |
presumptive ectoderm | 3.35e-13 | 95 |
neural tube | 1.60e-12 | 52 |
neural rod | 1.60e-12 | 52 |
future spinal cord | 1.60e-12 | 52 |
neural keel | 1.60e-12 | 52 |
central nervous system | 2.53e-12 | 73 |
brain | 5.03e-12 | 47 |
future brain | 5.03e-12 | 47 |
regional part of brain | 1.97e-11 | 46 |
nervous system | 3.07e-11 | 75 |
anterior neural tube | 5.06e-11 | 40 |
gray matter | 5.14e-11 | 34 |
structure with developmental contribution from neural crest | 1.06e-10 | 92 |
regional part of forebrain | 1.90e-10 | 39 |
forebrain | 1.90e-10 | 39 |
future forebrain | 1.90e-10 | 39 |
brain grey matter | 2.00e-10 | 29 |
regional part of telencephalon | 2.00e-10 | 29 |
telencephalon | 2.00e-10 | 29 |
occipital lobe | 2.41e-07 | 10 |
visual cortex | 2.41e-07 | 10 |
neocortex | 2.41e-07 | 10 |
cerebral cortex | 4.51e-07 | 21 |
cerebral hemisphere | 4.51e-07 | 21 |
pallium | 4.51e-07 | 21 |
anatomical conduit | 8.95e-07 | 122 |