FFCP PHASE1:Mm9::chr9:108998082..108998114,+: Difference between revisions
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{{FFCP|EntrezGene=235611|HGNC=|MCL_coexpression_id=1133|UniProt=Q8CJH3,B2RWT9|association_with_transcript=132bp_to_ENSMUST00000072093,NM_172775,uc009rrz.2_5end|description=CAGE_peak_1_at_Plxnb1_5end|id=chr9:108998082..108998114,+|ontology_enrichment_celltype=CL:0000221!2.97e-20!44;CL:0000133!2.97e-20!44;CL:0002319!7.91e-20!43;CL:0000540!1.23e-15!33;CL:0000047!1.23e-15!33;CL:0000031!1.23e-15!33;CL:0000404!1.23e-15!33;CL:0000055!3.65e-15!50;CL:0000117!1.46e-12!23;CL:0000337!1.46e-12!23;CL:0000393!1.30e-11!39;CL:0000211!1.30e-11!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.51e-20,44;CL:0000133,1.51e-20,44;CL:0002319,4.08e-20,43;CL:0000540,7.36e-16,33;CL:0000047,7.36e-16,33;CL:0000031,7.36e-16,33;CL:0000404,7.36e-16,33;CL:0000117,9.81e-13,23;CL:0000337,9.81e-13,23;CL:0000393,1.34e-11,39;CL:0000211,1.34e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.16e-40!102;UBERON:0000924!8.16e-40!102;UBERON:0006601!8.16e-40!102;UBERON:0000073!2.03e-36!75;UBERON:0001016!2.03e-36!75;UBERON:0001017!2.39e-36!73;UBERON:0005743!2.39e-36!73;UBERON:0002346!8.19e-29!71;UBERON:0003075!8.19e-29!71;UBERON:0007284!8.19e-29!71;UBERON:0000033!3.74e-25!63;UBERON:0001049!1.99e-24!52;UBERON:0005068!1.99e-24!52;UBERON:0006241!1.99e-24!52;UBERON:0007135!1.99e-24!52;UBERON:0000955!2.14e-23!50;UBERON:0006238!2.14e-23!50;UBERON:0002616!8.14e-23!49;UBERON:0003056!9.33e-20!49;UBERON:0003080!3.99e-18!40;UBERON:0002780!1.90e-17!39;UBERON:0001890!1.90e-17!39;UBERON:0006240!1.90e-17!39;UBERON:0002020!1.29e-16!34;UBERON:0002791!8.15e-14!29;UBERON:0003528!8.15e-14!29;UBERON:0001893!8.15e-14!29;UBERON:0000468!1.17e-10!333;UBERON:0007811!3.47e-10!86;UBERON:0000153!5.94e-10!94;UBERON:0000956!1.09e-09!21;UBERON:0001869!1.09e-09!21;UBERON:0000203!1.09e-09!21;UBERON:0004111!8.05e-09!122;UBERON:0000025!1.02e-08!114;UBERON:0002619!2.33e-08!17;UBERON:0000922!3.64e-08!328;UBERON:0000479!6.16e-07!349;UBERON:0003076!6.73e-07!12;UBERON:0003057!6.73e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.62e-39,95;UBERON:0000924,6.62e-39,95;UBERON:0006601,6.62e-39,95;UBERON:0001016,5.70e-37,75;UBERON:0001017,6.73e-37,73;UBERON:0002346,2.96e-28,64;UBERON:0003075,2.96e-28,64;UBERON:0007284,2.96e-28,64;UBERON:0010371,3.43e-27,73;UBERON:0000073,2.82e-26,54;UBERON:0001049,8.68e-25,52;UBERON:0005068,8.68e-25,52;UBERON:0006241,8.68e-25,52;UBERON:0007135,8.68e-25,52;UBERON:0010314,7.22e-23,92;UBERON:0000955,1.46e-21,47;UBERON:0006238,1.46e-21,47;UBERON:0002616,5.53e-21,46;UBERON:0003056,4.82e-20,49;UBERON:0003080,2.19e-18,40;UBERON:0002780,1.07e-17,39;UBERON:0001890,1.07e-17,39;UBERON:0006240,1.07e-17,39;UBERON:0002020,7.45e-17,34;UBERON:0003528,5.23e-14,29;UBERON:0002791,5.23e-14,29;UBERON:0001893,5.23e-14,29;UBERON:0000956,8.13e-10,21;UBERON:0001869,8.13e-10,21;UBERON:0000203,8.13e-10,21;UBERON:0002619,1.82e-08,17;UBERON:0004111,2.10e-08,122;UBERON:0000025,2.72e-08,114;UBERON:0003076,5.54e-07,12;UBERON:0003057,5.54e-07,12|phase1_expression=2.88267924788629,0.348975407639361,0,0,0,0.671517087647559,1.86890112476421,0.258246646883153,0.281577444303333,1.40438715793196,0.171217968225505,0,0,0.174840804837995,0,0,0,0,0.137114433605739,0,3.74190476664707,0,0,0.95995453676044,0.91763712426868,0.57423196411502,0.430761996159075,0.430942465371778,0,0,1.10865255327652,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.755380907853464,1.52065396829272,1.28482726513177,1.56478268869608,63.6633456630904,54.0428009526801,55.9958109333936,28.1372707466979,77.6263847570847,0,0,0,1.54355661621568,2.0057340795713,1.03134418455488,18.8154308599426,16.398720357433,15.8457850876545,3.38844532069132,9.78224275722253,0,0,0,44.3408163567239,79.5331892015618,7.77672092313582,9.72042755988173,9.25429829946081,23.9946826899195,18.5529574399355,11.8816075238505,9.68039257284187,11.9498442259303,36.3382407297983,28.2189017168265,30.8749131845049,15.5625819521629,12.4423195299277,18.2319679694866,24.8472869111229,18.0084035210138,26.4340968653881,18.8562294703147,22.3523538854592,12.8615617619457,2.49896437999507,11.5624486963382,4.63783181922684,1.72084775396277,0.679971333707751,0,0,0.448026887097336,1.96622188184453,0,0,0,11.1266301623578,0,0,0,0.865964164044856,2.78695852022608,2.52762222507392,2.05530983494308,0.776813650941515,19.8912466346865,2.4287945747259,6.39377504455497,3.45923245884088,4.52167921657868,5.64425794251383,9.55066094105534,6.67426412882809,2.60278842455841,0,3.558870698843,1.76673214768315,3.39412677194655,1.86391761218122,22.5441213698891,19.8974371472782,0.255457055208591,0,0,0,28.9095934051308,21.9600289352941,10.178002521142,17.3824320192276,18.4115129277838,25.1423533917068,24.3361894601636,2.13862664085664,2.36373244159177,0,2.10441855886474,5.07469727554544,6.20735681970377,7.20248519221397,7.53524089178575,10.1374383735478,11.0177799444971,11.5253121208466,5.69147415625834,3.88022387279116,5.67318240503458,3.69497360744293,2.6303487891309,2.78047249225598,3.83077383174383,2.46938563689532,1.99034266818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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:235611 | |||
|HGNC= | |||
|MCL_coexpression_id=1133 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CJH3,uniprot:B2RWT9 | |||
|association_with_transcript=132bp_to_ENSMUST00000072093,NM_172775,uc009rrz.2_5end | |||
|cluster_id=chr9:108998082..108998114,+ | |||
|description=CAGE_peak_1_at_Plxnb1_5end | |||
|id=chr9:108998082..108998114,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.97e-20!44;CL:0000133!2.97e-20!44;CL:0002319!7.91e-20!43;CL:0000540!1.23e-15!33;CL:0000047!1.23e-15!33;CL:0000031!1.23e-15!33;CL:0000404!1.23e-15!33;CL:0000055!3.65e-15!50;CL:0000117!1.46e-12!23;CL:0000337!1.46e-12!23;CL:0000393!1.30e-11!39;CL:0000211!1.30e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.51e-20,44;CL:0000133,1.51e-20,44;CL:0002319,4.08e-20,43;CL:0000540,7.36e-16,33;CL:0000047,7.36e-16,33;CL:0000031,7.36e-16,33;CL:0000404,7.36e-16,33;CL:0000117,9.81e-13,23;CL:0000337,9.81e-13,23;CL:0000393,1.34e-11,39;CL:0000211,1.34e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.16e-40!102;UBERON:0000924!8.16e-40!102;UBERON:0006601!8.16e-40!102;UBERON:0000073!2.03e-36!75;UBERON:0001016!2.03e-36!75;UBERON:0001017!2.39e-36!73;UBERON:0005743!2.39e-36!73;UBERON:0002346!8.19e-29!71;UBERON:0003075!8.19e-29!71;UBERON:0007284!8.19e-29!71;UBERON:0000033!3.74e-25!63;UBERON:0001049!1.99e-24!52;UBERON:0005068!1.99e-24!52;UBERON:0006241!1.99e-24!52;UBERON:0007135!1.99e-24!52;UBERON:0000955!2.14e-23!50;UBERON:0006238!2.14e-23!50;UBERON:0002616!8.14e-23!49;UBERON:0003056!9.33e-20!49;UBERON:0003080!3.99e-18!40;UBERON:0002780!1.90e-17!39;UBERON:0001890!1.90e-17!39;UBERON:0006240!1.90e-17!39;UBERON:0002020!1.29e-16!34;UBERON:0002791!8.15e-14!29;UBERON:0003528!8.15e-14!29;UBERON:0001893!8.15e-14!29;UBERON:0000468!1.17e-10!333;UBERON:0007811!3.47e-10!86;UBERON:0000153!5.94e-10!94;UBERON:0000956!1.09e-09!21;UBERON:0001869!1.09e-09!21;UBERON:0000203!1.09e-09!21;UBERON:0004111!8.05e-09!122;UBERON:0000025!1.02e-08!114;UBERON:0002619!2.33e-08!17;UBERON:0000922!3.64e-08!328;UBERON:0000479!6.16e-07!349;UBERON:0003076!6.73e-07!12;UBERON:0003057!6.73e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.62e-39,95;UBERON:0000924,6.62e-39,95;UBERON:0006601,6.62e-39,95;UBERON:0001016,5.70e-37,75;UBERON:0001017,6.73e-37,73;UBERON:0002346,2.96e-28,64;UBERON:0003075,2.96e-28,64;UBERON:0007284,2.96e-28,64;UBERON:0010371,3.43e-27,73;UBERON:0000073,2.82e-26,54;UBERON:0001049,8.68e-25,52;UBERON:0005068,8.68e-25,52;UBERON:0006241,8.68e-25,52;UBERON:0007135,8.68e-25,52;UBERON:0010314,7.22e-23,92;UBERON:0000955,1.46e-21,47;UBERON:0006238,1.46e-21,47;UBERON:0002616,5.53e-21,46;UBERON:0003056,4.82e-20,49;UBERON:0003080,2.19e-18,40;UBERON:0002780,1.07e-17,39;UBERON:0001890,1.07e-17,39;UBERON:0006240,1.07e-17,39;UBERON:0002020,7.45e-17,34;UBERON:0003528,5.23e-14,29;UBERON:0002791,5.23e-14,29;UBERON:0001893,5.23e-14,29;UBERON:0000956,8.13e-10,21;UBERON:0001869,8.13e-10,21;UBERON:0000203,8.13e-10,21;UBERON:0002619,1.82e-08,17;UBERON:0004111,2.10e-08,122;UBERON:0000025,2.72e-08,114;UBERON:0003076,5.54e-07,12;UBERON:0003057,5.54e-07,12 | |||
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| |||
|short_description=p1@Plxnb1 | |||
}} |
Revision as of 14:25, 4 August 2015
Short description: | p1@Plxnb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Plxnb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1133 |
Association with transcript: | 132bp_to_ENSMUST00000072093, NM_172775, uc009rrz.2_5end |
EntrezGene: | 235611 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.51e-20 | 44 |
neurectodermal cell | 1.51e-20 | 44 |
neural cell | 4.08e-20 | 43 |
neuron | 7.36e-16 | 33 |
neuronal stem cell | 7.36e-16 | 33 |
neuroblast | 7.36e-16 | 33 |
electrically signaling cell | 7.36e-16 | 33 |
CNS neuron (sensu Vertebrata) | 9.81e-13 | 23 |
neuroblast (sensu Vertebrata) | 9.81e-13 | 23 |
electrically responsive cell | 1.34e-11 | 39 |
electrically active cell | 1.34e-11 | 39 |