FFCP PHASE1:Mm9::chr19:6061267..6061288,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=381|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:6061267..6061288,+|id=chr19:6061267..6061288,+|ontology_enrichment_celltype=CL:0000988!4.32e-07!32;CL:0002032!4.32e-07!32;CL:0000037!4.32e-07!32;CL:0000566!4.32e-07!32;CL:0000837!4.32e-07!32|ontology_enrichment_celltype_v019_2=CL:0000988,3.41e-09,32;CL:0002032,3.41e-09,32;CL:0000037,3.41e-09,32;CL:0000837,3.41e-09,32;CL:0002031,4.45e-08,25;CL:0000049,4.54e-07,19|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.77e-13!73;UBERON:0005743!3.77e-13!73;UBERON:0000073!4.58e-13!75;UBERON:0001016!4.58e-13!75;UBERON:0001049!4.62e-13!52;UBERON:0005068!4.62e-13!52;UBERON:0006241!4.62e-13!52;UBERON:0007135!4.62e-13!52;UBERON:0007811!8.57e-13!86;UBERON:0000153!1.53e-11!94;UBERON:0002616!1.83e-11!49;UBERON:0000955!4.14e-11!50;UBERON:0006238!4.14e-11!50;UBERON:0002346!1.16e-09!71;UBERON:0003075!1.16e-09!71;UBERON:0007284!1.16e-09!71;UBERON:0004121!3.96e-09!102;UBERON:0000924!3.96e-09!102;UBERON:0006601!3.96e-09!102;UBERON:0002020!4.94e-09!34;UBERON:0003080!5.35e-09!40;UBERON:0002780!5.36e-09!39;UBERON:0001890!5.36e-09!39;UBERON:0006240!5.36e-09!39;UBERON:0000033!5.63e-09!63;UBERON:0002619!8.20e-08!17;UBERON:0002791!3.51e-07!29;UBERON:0003528!3.51e-07!29;UBERON:0001893!3.51e-07!29;UBERON:0000064!4.88e-07!99;UBERON:0002021!5.05e-07!10;UBERON:0000411!5.05e-07!10;UBERON:0001950!5.05e-07!10;UBERON:0000956!5.28e-07!21;UBERON:0001869!5.28e-07!21;UBERON:0000203!5.28e-07!21;UBERON:0003056!7.57e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.04e-16,54;UBERON:0001049,4.94e-16,52;UBERON:0005068,4.94e-16,52;UBERON:0006241,4.94e-16,52;UBERON:0007135,4.94e-16,52;UBERON:0001017,3.16e-15,73;UBERON:0001016,1.78e-14,75;UBERON:0002020,1.26e-13,34;UBERON:0002616,5.75e-13,46;UBERON:0002619,9.42e-13,17;UBERON:0000955,1.70e-12,47;UBERON:0006238,1.70e-12,47;UBERON:0002780,2.96e-12,39;UBERON:0001890,2.96e-12,39;UBERON:0006240,2.96e-12,39;UBERON:0002346,8.44e-12,64;UBERON:0003075,8.44e-12,64;UBERON:0007284,8.44e-12,64;UBERON:0003080,9.52e-12,40;UBERON:0003528,2.69e-11,29;UBERON:0002791,2.69e-11,29;UBERON:0001893,2.69e-11,29;UBERON:0002021,2.95e-11,10;UBERON:0000411,2.95e-11,10;UBERON:0001950,2.95e-11,10;UBERON:0000956,5.64e-11,21;UBERON:0001869,5.64e-11,21;UBERON:0000203,5.64e-11,21;UBERON:0010371,1.42e-10,73;UBERON:0004121,4.33e-10,95;UBERON:0000924,4.33e-10,95;UBERON:0006601,4.33e-10,95;UBERON:0003056,6.59e-09,49;UBERON:0010314,7.13e-07,92|phase1_expression=1.44133962394315,0.348975407639361,0,0,0,0.16787927191189,0.700837921786577,2.32421982194837,1.68946466582,3.04283884218592,0.68487187290202,0.8774937489487,2.22560948910567,2.53519167015092,2.6648780945253,0.202475267389826,0.699561878128147,1.41957974411207,0.822686601634433,1.27316895539409,3.40173160604279,1.29078236561151,0,0.799962113967033,0.68822784320151,0.57423196411502,0.430761996159075,0.430942465371778,0.380046838912748,0.252030129759931,0.443461021310609,4.44521471421742,1.23012957516914,15.8481681015439,0.288851619751275,0,0.204169356262369,1.25559489221072,1.5626706890476,0,1.76469446409304,0,0.485510353031154,1.6366586336825,0.811015449756117,0.550640256485045,0.782391344348039,1.30815093828268,2.85592037554813,2.72201858703997,1.25987779462826,0,0.503347818173209,0.725362142011344,2.35265659399725,0.514518872071894,0.573066879877513,1.54701627683233,0.202316460859598,1.5869729378161,0.633831403506179,0.338844532069132,0,0.899899717281399,0.988866362566974,1.4209602298922,2.69640099466564,5.76327457982332,0.414758449233911,0.270011876663381,0.420649922702764,1.99955689082663,1.54607978666129,0.244981598429908,0.383381884072945,1.83843757322004,1.10115880999389,1.0214987046815,1.22885226604995,0.263772575460388,0.548925861614458,0,1.3959149950069,1.68828783009504,2.44477196442896,2.06240009831567,0.854230084794618,1.4911955666024,0.454357159999104,0.604572480854284,0.869593466105033,0,0,0.539703191637817,0.649776417447669,0.448026887097336,1.26399978118577,0.340860645156116,0.259786004602869,0,1.26759077799012,1.28326477414318,0,0,0.432982082022428,0.506719730950197,0.505524445014783,0.45673551887624,0.258937883647172,0.742210695324124,0.173485326766136,0.913396434936424,0.230615497256059,0.452167921657868,0.470354828542819,0.879666139307728,0.988779870937496,0,1.76922110389975,0.647067399789637,0,0.969750506270444,0,0.878342391034642,1.04723353406728,0.510914110417183,1.55759661857696,0,1.65191295194984,0.599162557619291,1.83000241127451,0.502617408451458,2.08589184230732,2.30143911597297,2.49345653471472,1.62241263067758,0.712875546952214,0.373220911830279,2.77995034277042,0,0.650602214813519,1.14951052216736,0.180062129805349,0.150704817835715,0.476255494059295,0.512454881139399,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0.703804496655795,0.43839146485515,0.556094498451196,0.696504333044333,0.205782136407943,0.59710280045548,2.1066395619397,0.51469581422943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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=381 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:6061267..6061288,+ | |||
|description=CAGE_peak_at_chr19:6061267..6061288,+ | |||
|id=chr19:6061267..6061288,+ | |||
|ontology_enrichment_celltype=CL:0000988!4.32e-07!32;CL:0002032!4.32e-07!32;CL:0000037!4.32e-07!32;CL:0000566!4.32e-07!32;CL:0000837!4.32e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,3.41e-09,32;CL:0002032,3.41e-09,32;CL:0000037,3.41e-09,32;CL:0000837,3.41e-09,32;CL:0002031,4.45e-08,25;CL:0000049,4.54e-07,19 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.77e-13!73;UBERON:0005743!3.77e-13!73;UBERON:0000073!4.58e-13!75;UBERON:0001016!4.58e-13!75;UBERON:0001049!4.62e-13!52;UBERON:0005068!4.62e-13!52;UBERON:0006241!4.62e-13!52;UBERON:0007135!4.62e-13!52;UBERON:0007811!8.57e-13!86;UBERON:0000153!1.53e-11!94;UBERON:0002616!1.83e-11!49;UBERON:0000955!4.14e-11!50;UBERON:0006238!4.14e-11!50;UBERON:0002346!1.16e-09!71;UBERON:0003075!1.16e-09!71;UBERON:0007284!1.16e-09!71;UBERON:0004121!3.96e-09!102;UBERON:0000924!3.96e-09!102;UBERON:0006601!3.96e-09!102;UBERON:0002020!4.94e-09!34;UBERON:0003080!5.35e-09!40;UBERON:0002780!5.36e-09!39;UBERON:0001890!5.36e-09!39;UBERON:0006240!5.36e-09!39;UBERON:0000033!5.63e-09!63;UBERON:0002619!8.20e-08!17;UBERON:0002791!3.51e-07!29;UBERON:0003528!3.51e-07!29;UBERON:0001893!3.51e-07!29;UBERON:0000064!4.88e-07!99;UBERON:0002021!5.05e-07!10;UBERON:0000411!5.05e-07!10;UBERON:0001950!5.05e-07!10;UBERON:0000956!5.28e-07!21;UBERON:0001869!5.28e-07!21;UBERON:0000203!5.28e-07!21;UBERON:0003056!7.57e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.04e-16,54;UBERON:0001049,4.94e-16,52;UBERON:0005068,4.94e-16,52;UBERON:0006241,4.94e-16,52;UBERON:0007135,4.94e-16,52;UBERON:0001017,3.16e-15,73;UBERON:0001016,1.78e-14,75;UBERON:0002020,1.26e-13,34;UBERON:0002616,5.75e-13,46;UBERON:0002619,9.42e-13,17;UBERON:0000955,1.70e-12,47;UBERON:0006238,1.70e-12,47;UBERON:0002780,2.96e-12,39;UBERON:0001890,2.96e-12,39;UBERON:0006240,2.96e-12,39;UBERON:0002346,8.44e-12,64;UBERON:0003075,8.44e-12,64;UBERON:0007284,8.44e-12,64;UBERON:0003080,9.52e-12,40;UBERON:0003528,2.69e-11,29;UBERON:0002791,2.69e-11,29;UBERON:0001893,2.69e-11,29;UBERON:0002021,2.95e-11,10;UBERON:0000411,2.95e-11,10;UBERON:0001950,2.95e-11,10;UBERON:0000956,5.64e-11,21;UBERON:0001869,5.64e-11,21;UBERON:0000203,5.64e-11,21;UBERON:0010371,1.42e-10,73;UBERON:0004121,4.33e-10,95;UBERON:0000924,4.33e-10,95;UBERON:0006601,4.33e-10,95;UBERON:0003056,6.59e-09,49;UBERON:0010314,7.13e-07,92 | |||
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| |||
|short_description=p@chr19:6061267..6061288,+ | |||
}} |
Latest revision as of 11:37, 4 August 2015
Short description: | p@chr19:6061267..6061288, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:6061267..6061288, + |
Coexpression cluster: | MCL_coexpression_mm9:381 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 3.41e-09 | 32 |
hematopoietic oligopotent progenitor cell | 3.41e-09 | 32 |
hematopoietic stem cell | 3.41e-09 | 32 |
hematopoietic multipotent progenitor cell | 3.41e-09 | 32 |
hematopoietic lineage restricted progenitor cell | 4.45e-08 | 25 |
common myeloid progenitor | 4.54e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.04e-16 | 54 |
neural tube | 4.94e-16 | 52 |
neural rod | 4.94e-16 | 52 |
future spinal cord | 4.94e-16 | 52 |
neural keel | 4.94e-16 | 52 |
central nervous system | 3.16e-15 | 73 |
nervous system | 1.78e-14 | 75 |
gray matter | 1.26e-13 | 34 |
regional part of brain | 5.75e-13 | 46 |
regional part of cerebral cortex | 9.42e-13 | 17 |
brain | 1.70e-12 | 47 |
future brain | 1.70e-12 | 47 |
regional part of forebrain | 2.96e-12 | 39 |
forebrain | 2.96e-12 | 39 |
future forebrain | 2.96e-12 | 39 |
neurectoderm | 8.44e-12 | 64 |
neural plate | 8.44e-12 | 64 |
presumptive neural plate | 8.44e-12 | 64 |
anterior neural tube | 9.52e-12 | 40 |
brain grey matter | 2.69e-11 | 29 |
regional part of telencephalon | 2.69e-11 | 29 |
telencephalon | 2.69e-11 | 29 |
occipital lobe | 2.95e-11 | 10 |
visual cortex | 2.95e-11 | 10 |
neocortex | 2.95e-11 | 10 |
cerebral cortex | 5.64e-11 | 21 |
cerebral hemisphere | 5.64e-11 | 21 |
pallium | 5.64e-11 | 21 |
ecto-epithelium | 1.42e-10 | 73 |
ectoderm-derived structure | 4.33e-10 | 95 |
ectoderm | 4.33e-10 | 95 |
presumptive ectoderm | 4.33e-10 | 95 |
pre-chordal neural plate | 6.59e-09 | 49 |
structure with developmental contribution from neural crest | 7.13e-07 | 92 |