FFCP PHASE1:Mm9::chr3:90097085..90097175,+: Difference between revisions
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{{FFCP|EntrezGene=229542|HGNC=|UniProt=Q8VHR5|association_with_transcript=0bp_to_uc008qca.1_5end|description=CAGE_peak_1_at_Gatad2b_5end|id=chr3:90097085..90097175,+|ontology_enrichment_celltype=CL:0000540!9.28e-07!33;CL:0000047!9.28e-07!33;CL:0000031!9.28e-07!33;CL:0000404!9.28e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,9.28e-07,33;CL:0000047,9.28e-07,33;CL:0000031,9.28e-07,33;CL:0000404,9.28e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!3.78e-13!94;UBERON:0007811!1.40e-11!86;UBERON:0000955!3.15e-11!50;UBERON:0006238!3.15e-11!50;UBERON:0000033!5.42e-11!63;UBERON:0001017!5.60e-11!73;UBERON:0005743!5.60e-11!73;UBERON:0002616!9.77e-11!49;UBERON:0004121!1.19e-10!102;UBERON:0000924!1.19e-10!102;UBERON:0006601!1.19e-10!102;UBERON:0002791!1.53e-10!29;UBERON:0003528!1.53e-10!29;UBERON:0001893!1.53e-10!29;UBERON:0003080!3.01e-10!40;UBERON:0001049!3.68e-10!52;UBERON:0005068!3.68e-10!52;UBERON:0006241!3.68e-10!52;UBERON:0007135!3.68e-10!52;UBERON:0003056!4.22e-10!49;UBERON:0000073!6.34e-10!75;UBERON:0001016!6.34e-10!75;UBERON:0002780!6.92e-10!39;UBERON:0001890!6.92e-10!39;UBERON:0006240!6.92e-10!39;UBERON:0002020!8.05e-10!34;UBERON:0002346!2.94e-09!71;UBERON:0003075!2.94e-09!71;UBERON:0007284!2.94e-09!71;UBERON:0000956!5.46e-09!21;UBERON:0001869!5.46e-09!21;UBERON:0000203!5.46e-09!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.94e-11,95;UBERON:0000924,1.94e-11,95;UBERON:0006601,1.94e-11,95;UBERON:0010371,3.06e-11,73;UBERON:0001017,5.60e-11,73;UBERON:0000955,1.41e-10,47;UBERON:0006238,1.41e-10,47;UBERON:0003528,1.53e-10,29;UBERON:0002791,1.53e-10,29;UBERON:0001893,1.53e-10,29;UBERON:0000073,2.01e-10,54;UBERON:0002346,2.70e-10,64;UBERON:0003075,2.70e-10,64;UBERON:0007284,2.70e-10,64;UBERON:0003080,3.01e-10,40;UBERON:0001049,3.68e-10,52;UBERON:0005068,3.68e-10,52;UBERON:0006241,3.68e-10,52;UBERON:0007135,3.68e-10,52;UBERON:0003056,4.22e-10,49;UBERON:0002616,4.32e-10,46;UBERON:0001016,6.34e-10,75;UBERON:0002780,6.92e-10,39;UBERON:0001890,6.92e-10,39;UBERON:0006240,6.92e-10,39;UBERON:0002020,8.05e-10,34;UBERON:0000956,5.46e-09,21;UBERON:0001869,5.46e-09,21;UBERON:0000203,5.46e-09,21;UBERON:0010314,9.18e-08,92|phase1_expression=40.6778071646177,15.0059425284925,12.739978702907,22.3823516367054,20.5367249278002,16.6200479192771,16.5864974822823,43.5145599998112,25.3419699873,25.0449043164533,24.3129514880217,22.4159766776895,34.924948905966,42.9234175877277,34.9765249906446,40.4950534779652,36.3772176626636,46.2152072249818,51.2807981685463,43.7121341351971,34.8677489619386,25.3191925562258,15.6719873483361,21.4389846543165,14.4527847072317,13.7815671387605,12.9228598847722,12.0663890304098,18.812318526181,18.3981994724749,11.7517170647311,20.3209815507082,12.916360539276,15.8481681015439,14.731432607315,13.7974755647549,14.2918549383658,50.2237956884289,40.6294379152376,49.7347556775108,39.411509698078,47.8131839470912,50.9785870682711,22.5355304176283,22.3029248682932,17.9875817118448,23.4717403304412,22.8926414199469,27.02140047634,22.1650084944683,21.5579089303058,21.5628846547457,48.3213905446281,77.6137491952139,82.6790745890461,22.8960898071993,28.3668105539369,29.9089813520917,53.6138621277934,41.7902873624906,53.2418378945191,23.3802727127701,31.1253178638899,22.9474427906757,20.7661936139065,19.1829631035447,20.0732074047331,25.3584081512226,75.5897273728802,70.0680819941474,72.141461743524,33.7068161596488,27.8294361599033,55.1208596467293,54.6319184803947,68.9414089957516,39.6417171597799,56.1824287574826,46.081959976873,52.358856228887,43.1821677803374,48.9658568323354,39.3648028591947,33.7657566019008,46.7562638197039,43.3104020646292,41.8572741549363,46.5998614563251,19.0830007199624,25.4676157559867,35.073603132903,23.2314446784974,26.5188820146023,18.3499085156858,19.4932925234301,21.9533174677694,30.1955503283267,20.1107780642108,9.87186817490901,9.54016851177919,34.36579442551,29.5150898052931,63.7013099266614,35.5533351576666,9.09262372247099,11.1478340809043,9.0994400102661,23.8644308612835,78.1992408614459,49.134348030457,30.1864468573076,24.6617037432834,23.522780720118,29.9938054699719,46.3299506114677,38.70531012954,44.2478992244529,54.3693582018868,37.1536431818947,39.4711113871678,49.0268170982074,35.8807687320064,27.9587641827183,64.1189945455288,51.3144431692965,22.9911349687732,27.1980332628439,15.5974710058286,21.9831492836402,51.3781893158542,61.7625813805146,63.7067565212223,67.0961875942187,61.88314067394,45.2977937139841,53.8640993384955,57.1318831200274,43.6668466841426,23.5032165343317,34.5124643653817,30.1879427673473,28.2779588453172,36.1924880908752,48.2255417074288,51.0273743634959,41.6369590925762,46.1949502079463,46.8253101037618,47.2093904522924,43.3052923584306,48.5625102692499,35.071317188412,39.7607566392605,47.0140424804925,40.7448630087728,34.0348596259623,12.6398373716382,17.2423097766859,21.596425954065,30.4474885627188,31.8955441574291,28.4498057108403,36.4586892801224,30.1049274573528,29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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:229542 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VHR5 | |||
|association_with_transcript=0bp_to_uc008qca.1_5end | |||
|cluster_id=chr3:90097085..90097175,+ | |||
|description=CAGE_peak_1_at_Gatad2b_5end | |||
|id=chr3:90097085..90097175,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.28e-07!33;CL:0000047!9.28e-07!33;CL:0000031!9.28e-07!33;CL:0000404!9.28e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.28e-07,33;CL:0000047,9.28e-07,33;CL:0000031,9.28e-07,33;CL:0000404,9.28e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!3.78e-13!94;UBERON:0007811!1.40e-11!86;UBERON:0000955!3.15e-11!50;UBERON:0006238!3.15e-11!50;UBERON:0000033!5.42e-11!63;UBERON:0001017!5.60e-11!73;UBERON:0005743!5.60e-11!73;UBERON:0002616!9.77e-11!49;UBERON:0004121!1.19e-10!102;UBERON:0000924!1.19e-10!102;UBERON:0006601!1.19e-10!102;UBERON:0002791!1.53e-10!29;UBERON:0003528!1.53e-10!29;UBERON:0001893!1.53e-10!29;UBERON:0003080!3.01e-10!40;UBERON:0001049!3.68e-10!52;UBERON:0005068!3.68e-10!52;UBERON:0006241!3.68e-10!52;UBERON:0007135!3.68e-10!52;UBERON:0003056!4.22e-10!49;UBERON:0000073!6.34e-10!75;UBERON:0001016!6.34e-10!75;UBERON:0002780!6.92e-10!39;UBERON:0001890!6.92e-10!39;UBERON:0006240!6.92e-10!39;UBERON:0002020!8.05e-10!34;UBERON:0002346!2.94e-09!71;UBERON:0003075!2.94e-09!71;UBERON:0007284!2.94e-09!71;UBERON:0000956!5.46e-09!21;UBERON:0001869!5.46e-09!21;UBERON:0000203!5.46e-09!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.94e-11,95;UBERON:0000924,1.94e-11,95;UBERON:0006601,1.94e-11,95;UBERON:0010371,3.06e-11,73;UBERON:0001017,5.60e-11,73;UBERON:0000955,1.41e-10,47;UBERON:0006238,1.41e-10,47;UBERON:0003528,1.53e-10,29;UBERON:0002791,1.53e-10,29;UBERON:0001893,1.53e-10,29;UBERON:0000073,2.01e-10,54;UBERON:0002346,2.70e-10,64;UBERON:0003075,2.70e-10,64;UBERON:0007284,2.70e-10,64;UBERON:0003080,3.01e-10,40;UBERON:0001049,3.68e-10,52;UBERON:0005068,3.68e-10,52;UBERON:0006241,3.68e-10,52;UBERON:0007135,3.68e-10,52;UBERON:0003056,4.22e-10,49;UBERON:0002616,4.32e-10,46;UBERON:0001016,6.34e-10,75;UBERON:0002780,6.92e-10,39;UBERON:0001890,6.92e-10,39;UBERON:0006240,6.92e-10,39;UBERON:0002020,8.05e-10,34;UBERON:0000956,5.46e-09,21;UBERON:0001869,5.46e-09,21;UBERON:0000203,5.46e-09,21;UBERON:0010314,9.18e-08,92 | |||
|phase1_expression=40.6778071646177,15.0059425284925,12.739978702907,22.3823516367054,20.5367249278002,16.6200479192771,16.5864974822823,43.5145599998112,25.3419699873,25.0449043164533,24.3129514880217,22.4159766776895,34.924948905966,42.9234175877277,34.9765249906446,40.4950534779652,36.3772176626636,46.2152072249818,51.2807981685463,43.7121341351971,34.8677489619386,25.3191925562258,15.6719873483361,21.4389846543165,14.4527847072317,13.7815671387605,12.9228598847722,12.0663890304098,18.812318526181,18.3981994724749,11.7517170647311,20.3209815507082,12.916360539276,15.8481681015439,14.731432607315,13.7974755647549,14.2918549383658,50.2237956884289,40.6294379152376,49.7347556775108,39.411509698078,47.8131839470912,50.9785870682711,22.5355304176283,22.3029248682932,17.9875817118448,23.4717403304412,22.8926414199469,27.02140047634,22.1650084944683,21.5579089303058,21.5628846547457,48.3213905446281,77.6137491952139,82.6790745890461,22.8960898071993,28.3668105539369,29.9089813520917,53.6138621277934,41.7902873624906,53.2418378945191,23.3802727127701,31.1253178638899,22.9474427906757,20.7661936139065,19.1829631035447,20.0732074047331,25.3584081512226,75.5897273728802,70.0680819941474,72.141461743524,33.7068161596488,27.8294361599033,55.1208596467293,54.6319184803947,68.9414089957516,39.6417171597799,56.1824287574826,46.081959976873,52.358856228887,43.1821677803374,48.9658568323354,39.3648028591947,33.7657566019008,46.7562638197039,43.3104020646292,41.8572741549363,46.5998614563251,19.0830007199624,25.4676157559867,35.073603132903,23.2314446784974,26.5188820146023,18.3499085156858,19.4932925234301,21.9533174677694,30.1955503283267,20.1107780642108,9.87186817490901,9.54016851177919,34.36579442551,29.5150898052931,63.7013099266614,35.5533351576666,9.09262372247099,11.1478340809043,9.0994400102661,23.8644308612835,78.1992408614459,49.134348030457,30.1864468573076,24.6617037432834,23.522780720118,29.9938054699719,46.3299506114677,38.70531012954,44.2478992244529,54.3693582018868,37.1536431818947,39.4711113871678,49.0268170982074,35.8807687320064,27.9587641827183,64.1189945455288,51.3144431692965,22.9911349687732,27.1980332628439,15.5974710058286,21.9831492836402,51.3781893158542,61.7625813805146,63.7067565212223,67.0961875942187,61.88314067394,45.2977937139841,53.8640993384955,57.1318831200274,43.6668466841426,23.5032165343317,34.5124643653817,30.1879427673473,28.2779588453172,36.1924880908752,48.2255417074288,51.0273743634959,41.6369590925762,46.1949502079463,46.8253101037618,47.2093904522924,43.3052923584306,48.5625102692499,35.071317188412,39.7607566392605,47.0140424804925,40.7448630087728,34.0348596259623,12.6398373716382,17.2423097766859,21.596425954065,30.4474885627188,31.8955441574291,28.4498057108403,36.4586892801224,30.1049274573528,29.773552787264,35.345159602062,34.8755421819505,48.224086397641,35.5449275813118,44.9818851576721,47.749528822509,37.5733967683104,32.4934170630755,51.6694712227431,59.3017654950839,71.8274194407405,46.2586296177317,28.2962106329992,32.6331023318908,32.7453707323218,37.8870336286954,33.4794650874749,26.9077433052293,29.4849720474467,24.6755112003146,27.9988223030818,33.4275827704358,31.8330355265841,28.8546848936298,19.7740269903929,28.0979464837102,21.706398784726,22.9498160153229,31.9895835307241,31.5581659884625,34.2134230780128,34.9114476901726,45.3778754690361,35.2859877153356,28.931589004002,27.631776100082,28.1345533741705,19.5658733877518,27.8631326545877,25.7492283598296,26.5337292614127,30.8347384510524,31.5942079275666,22.1524491049835,26.1803485080238,24.6445544698054,18.9447375099776,140.892842396807,25.6777253891267,28.7074659265396,26.7733610623938,24.0392534119362,27.9817242390753,49.3291017744834,29.5606602361956,39.1115943460862,29.1961547533324,38.0198202227373,46.399233311383,53.0837319175811,72.5897170031012,52.6501381314678,57.1378899293839,54.5335308808606,49.6505843588686,48.3517949224508,53.8094497923223,30.1582567878545,13.053736411649,28.0305635620851,35.043966780701,45.1147157865695,44.423229218445,35.2460132559852,59.3306678930277,32.4973465998744,37.8725581967739,49.5473814785438,43.0143836314594,50.3525003426211,57.7476122809218,34.0040989406911,44.7151462604307,49.0156844653689,59.1231222216125,51.9500711862263,43.269941691143,55.707340098923,60.5440351309205,25.2215762845929,22.8213797985683,25.3951787850391,21.5009790921724,23.328849537581,26.1319875752338,29.202397128009,26.5379622518579,25.3113138653152,30.3395287618383,30.5713964867496,28.8779521094923,42.8953903249773,29.8901416091975,33.1158230483852,31.9362182197073,49.8326056534789,36.2088699732203,36.694431594273,41.1027681304709,23.7018425144347,38.9771010389429,27.7865781549252,76.3423351119053,61.0335532910523,48.3106528674528,44.0483949371574,42.840774833461,25.9417944600567,53.4024869790268,32.1237255899963,31.1644170624466,27.7791791054568,34.4714276318585,34.3102511579773,34.3167259809784,53.0332701580829,46.6038336237781,47.2643910411129,13.3653886522116,37.327647242574,37.4107819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| |||
|short_description=p1@Gatad2b | |||
}} |
Revision as of 05:44, 4 August 2015
Short description: | p1@Gatad2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gatad2b_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc008qca.1_5end |
EntrezGene: | 229542 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.28e-07 | 33 |
neuronal stem cell | 9.28e-07 | 33 |
neuroblast | 9.28e-07 | 33 |
electrically signaling cell | 9.28e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.94e-11 | 95 |
ectoderm | 1.94e-11 | 95 |
presumptive ectoderm | 1.94e-11 | 95 |
ecto-epithelium | 3.06e-11 | 73 |
central nervous system | 5.60e-11 | 73 |
brain | 1.41e-10 | 47 |
future brain | 1.41e-10 | 47 |
brain grey matter | 1.53e-10 | 29 |
regional part of telencephalon | 1.53e-10 | 29 |
telencephalon | 1.53e-10 | 29 |
regional part of nervous system | 2.01e-10 | 54 |
neurectoderm | 2.70e-10 | 64 |
neural plate | 2.70e-10 | 64 |
presumptive neural plate | 2.70e-10 | 64 |
anterior neural tube | 3.01e-10 | 40 |
neural tube | 3.68e-10 | 52 |
neural rod | 3.68e-10 | 52 |
future spinal cord | 3.68e-10 | 52 |
neural keel | 3.68e-10 | 52 |
pre-chordal neural plate | 4.22e-10 | 49 |
regional part of brain | 4.32e-10 | 46 |
nervous system | 6.34e-10 | 75 |
regional part of forebrain | 6.92e-10 | 39 |
forebrain | 6.92e-10 | 39 |
future forebrain | 6.92e-10 | 39 |
gray matter | 8.05e-10 | 34 |
cerebral cortex | 5.46e-09 | 21 |
cerebral hemisphere | 5.46e-09 | 21 |
pallium | 5.46e-09 | 21 |
structure with developmental contribution from neural crest | 9.18e-08 | 92 |