FFCP PHASE1:Mm9::chr11:83943084..83943122,-: Difference between revisions
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{{FFCP|EntrezGene=217031|HGNC=|UniProt=Q8CHV6|association_with_transcript=0bp_to_ENSMUST00000018795_5end|description=CAGE_peak_1_at_Tada2a_5end|id=chr11:83943084..83943122,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.25e-13!102;UBERON:0000924!3.25e-13!102;UBERON:0006601!3.25e-13!102;UBERON:0000033!1.54e-12!63;UBERON:0003056!1.82e-12!49;UBERON:0002346!3.20e-12!71;UBERON:0003075!3.20e-12!71;UBERON:0007284!3.20e-12!71;UBERON:0001017!1.68e-10!73;UBERON:0005743!1.68e-10!73;UBERON:0000468!2.70e-10!333;UBERON:0000073!9.77e-10!75;UBERON:0001016!9.77e-10!75;UBERON:0003080!1.03e-09!40;UBERON:0000955!1.16e-09!50;UBERON:0006238!1.16e-09!50;UBERON:0001049!1.89e-09!52;UBERON:0005068!1.89e-09!52;UBERON:0006241!1.89e-09!52;UBERON:0007135!1.89e-09!52;UBERON:0002780!2.39e-09!39;UBERON:0001890!2.39e-09!39;UBERON:0006240!2.39e-09!39;UBERON:0000153!2.55e-09!94;UBERON:0002616!3.14e-09!49;UBERON:0000922!3.41e-08!328;UBERON:0002791!4.74e-08!29;UBERON:0003528!4.74e-08!29;UBERON:0001893!4.74e-08!29;UBERON:0000956!5.96e-08!21;UBERON:0001869!5.96e-08!21;UBERON:0000203!5.96e-08!21;UBERON:0002020!6.00e-08!34;UBERON:0002021!6.94e-08!10;UBERON:0000411!6.94e-08!10;UBERON:0001950!6.94e-08!10;UBERON:0007811!9.73e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.24e-13,73;UBERON:0004121,1.39e-13,95;UBERON:0000924,1.39e-13,95;UBERON:0006601,1.39e-13,95;UBERON:0002346,6.52e-13,64;UBERON:0003075,6.52e-13,64;UBERON:0007284,6.52e-13,64;UBERON:0003056,1.82e-12,49;UBERON:0001017,1.68e-10,73;UBERON:0001016,9.77e-10,75;UBERON:0003080,1.03e-09,40;UBERON:0000955,1.30e-09,47;UBERON:0006238,1.30e-09,47;UBERON:0001049,1.89e-09,52;UBERON:0005068,1.89e-09,52;UBERON:0006241,1.89e-09,52;UBERON:0007135,1.89e-09,52;UBERON:0002780,2.39e-09,39;UBERON:0001890,2.39e-09,39;UBERON:0006240,2.39e-09,39;UBERON:0000073,2.54e-09,54;UBERON:0002616,3.54e-09,46;UBERON:0010314,1.00e-08,92;UBERON:0003528,4.74e-08,29;UBERON:0002791,4.74e-08,29;UBERON:0001893,4.74e-08,29;UBERON:0000956,5.96e-08,21;UBERON:0001869,5.96e-08,21;UBERON:0000203,5.96e-08,21;UBERON:0002020,6.00e-08,34;UBERON:0002021,6.94e-08,10;UBERON:0000411,6.94e-08,10;UBERON:0001950,6.94e-08,10;UBERON:0000922,5.67e-07,320|phase1_expression=15.6945870162698,0.697950815278722,0.909998478779072,1.20985684522732,0.500895729946347,6.71517087647559,3.50418960893289,4.51931632045517,4.22366166455,3.27690336850791,12.6701296486874,14.1196721421745,5.9920255475922,3.84649770643589,11.6588416635482,7.08663435864391,3.49780939064073,2.5236973228659,3.70208970735495,2.54633791078818,10.6304112688837,7.94327609607082,12.27639008953,2.23989391910769,4.5881856213434,1.72269589234506,3.01533397311352,1.72376986148711,3.6104449696711,4.53654233567875,4.6563407237614,19.6859508772486,6.1506478758457,15.8481681015439,11.8429164098023,11.802659820453,10.0042984568561,0.418531630736908,3.1253413780952,1.0470474879476,1.17646297606203,0,0.485510353031154,10.7012295279241,9.93493925951243,14.1330999164495,7.04152209913235,3.05235218932625,10.1055644057857,5.05517737593137,6.29938897314131,4.31257693094915,3.02008690903925,2.17608642603403,1.68046899571232,8.48956138918625,13.4670716771216,5.15672092277442,13.1505699558739,16.9277113367051,19.0149421051854,4.06613438482959,8.00365316500025,4.49949858640699,1.97773272513395,4.2628806896766,3.29560121570245,5.76327457982332,22.5006458709397,19.3058491814318,18.5085965989216,13.4255962669788,14.5773237028065,15.6788222995141,11.6931474642248,11.9498442259303,8.8092704799511,17.1101033034152,17.2039317246993,16.2220133908138,12.0763689555181,19.2737947106001,9.77140496504833,11.8180148106653,15.7382195210114,14.7314292736834,14.9490264839058,14.1663578827228,8.17842887998388,8.84187253249391,7.8263411949453,4.30211938490693,5.439770669662,7.01614149129162,9.09686984426737,8.96053774194671,8.70755404816862,7.49893419343454,8.3131521472918,5.65343319216544,13.8026551381147,7.69958864485907,25.4805239706646,14.2213340630666,11.6905162146056,7.09407623330276,4.54972000513305,4.90990682791958,9.32176381129818,15.7348667408714,14.9197381018877,11.2652226975492,13.3756988408514,12.3592565253151,13.2875239063346,11.3099932196708,17.0564527736718,6.94076913215576,5.30766331169925,14.3972496453194,9.71702681225732,6.78825354389311,5.59175283654366,16.3957246326466,18.2218634927706,5.8755122697976,4.91242010474273,4.79922184794726,4.82866862877646,19.1732018438173,18.7575247155637,19.3507702253811,27.2904182701874,31.1972857943003,16.8308316093244,20.1179166204019,21.895463227818,11.1966273549084,13.1415834385511,46.5076501509107,18.9975846725547,17.012755728077,15.1252189036493,18.0845781402858,15.9205408014107,17.039124797885,16.585205247072,27.1638539275966,17.8921434134259,19.856138417621,24.105304010461,13.5901354105096,21.6876854395966,16.716103993064,16.8741351854514,22.8889406841267,2.1066395619397,5.40430604940902,5.68326998791185,13.4631752148076,14.54061571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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:217031 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CHV6 | |||
|association_with_transcript=0bp_to_ENSMUST00000018795_5end | |||
|cluster_id=chr11:83943084..83943122,- | |||
|description=CAGE_peak_1_at_Tada2a_5end | |||
|id=chr11:83943084..83943122,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.25e-13!102;UBERON:0000924!3.25e-13!102;UBERON:0006601!3.25e-13!102;UBERON:0000033!1.54e-12!63;UBERON:0003056!1.82e-12!49;UBERON:0002346!3.20e-12!71;UBERON:0003075!3.20e-12!71;UBERON:0007284!3.20e-12!71;UBERON:0001017!1.68e-10!73;UBERON:0005743!1.68e-10!73;UBERON:0000468!2.70e-10!333;UBERON:0000073!9.77e-10!75;UBERON:0001016!9.77e-10!75;UBERON:0003080!1.03e-09!40;UBERON:0000955!1.16e-09!50;UBERON:0006238!1.16e-09!50;UBERON:0001049!1.89e-09!52;UBERON:0005068!1.89e-09!52;UBERON:0006241!1.89e-09!52;UBERON:0007135!1.89e-09!52;UBERON:0002780!2.39e-09!39;UBERON:0001890!2.39e-09!39;UBERON:0006240!2.39e-09!39;UBERON:0000153!2.55e-09!94;UBERON:0002616!3.14e-09!49;UBERON:0000922!3.41e-08!328;UBERON:0002791!4.74e-08!29;UBERON:0003528!4.74e-08!29;UBERON:0001893!4.74e-08!29;UBERON:0000956!5.96e-08!21;UBERON:0001869!5.96e-08!21;UBERON:0000203!5.96e-08!21;UBERON:0002020!6.00e-08!34;UBERON:0002021!6.94e-08!10;UBERON:0000411!6.94e-08!10;UBERON:0001950!6.94e-08!10;UBERON:0007811!9.73e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.24e-13,73;UBERON:0004121,1.39e-13,95;UBERON:0000924,1.39e-13,95;UBERON:0006601,1.39e-13,95;UBERON:0002346,6.52e-13,64;UBERON:0003075,6.52e-13,64;UBERON:0007284,6.52e-13,64;UBERON:0003056,1.82e-12,49;UBERON:0001017,1.68e-10,73;UBERON:0001016,9.77e-10,75;UBERON:0003080,1.03e-09,40;UBERON:0000955,1.30e-09,47;UBERON:0006238,1.30e-09,47;UBERON:0001049,1.89e-09,52;UBERON:0005068,1.89e-09,52;UBERON:0006241,1.89e-09,52;UBERON:0007135,1.89e-09,52;UBERON:0002780,2.39e-09,39;UBERON:0001890,2.39e-09,39;UBERON:0006240,2.39e-09,39;UBERON:0000073,2.54e-09,54;UBERON:0002616,3.54e-09,46;UBERON:0010314,1.00e-08,92;UBERON:0003528,4.74e-08,29;UBERON:0002791,4.74e-08,29;UBERON:0001893,4.74e-08,29;UBERON:0000956,5.96e-08,21;UBERON:0001869,5.96e-08,21;UBERON:0000203,5.96e-08,21;UBERON:0002020,6.00e-08,34;UBERON:0002021,6.94e-08,10;UBERON:0000411,6.94e-08,10;UBERON:0001950,6.94e-08,10;UBERON:0000922,5.67e-07,320 | |||
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| |||
|short_description=p1@Tada2a | |||
}} |
Revision as of 05:07, 4 August 2015
Short description: | p1@Tada2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tada2a_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000018795_5end |
EntrezGene: | 217031 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 1.24e-13 | 73 |
ectoderm-derived structure | 1.39e-13 | 95 |
ectoderm | 1.39e-13 | 95 |
presumptive ectoderm | 1.39e-13 | 95 |
neurectoderm | 6.52e-13 | 64 |
neural plate | 6.52e-13 | 64 |
presumptive neural plate | 6.52e-13 | 64 |
pre-chordal neural plate | 1.82e-12 | 49 |
central nervous system | 1.68e-10 | 73 |
nervous system | 9.77e-10 | 75 |
anterior neural tube | 1.03e-09 | 40 |
brain | 1.30e-09 | 47 |
future brain | 1.30e-09 | 47 |
neural tube | 1.89e-09 | 52 |
neural rod | 1.89e-09 | 52 |
future spinal cord | 1.89e-09 | 52 |
neural keel | 1.89e-09 | 52 |
regional part of forebrain | 2.39e-09 | 39 |
forebrain | 2.39e-09 | 39 |
future forebrain | 2.39e-09 | 39 |
regional part of nervous system | 2.54e-09 | 54 |
regional part of brain | 3.54e-09 | 46 |
structure with developmental contribution from neural crest | 1.00e-08 | 92 |
brain grey matter | 4.74e-08 | 29 |
regional part of telencephalon | 4.74e-08 | 29 |
telencephalon | 4.74e-08 | 29 |
cerebral cortex | 5.96e-08 | 21 |
cerebral hemisphere | 5.96e-08 | 21 |
pallium | 5.96e-08 | 21 |
gray matter | 6.00e-08 | 34 |
occipital lobe | 6.94e-08 | 10 |
visual cortex | 6.94e-08 | 10 |
neocortex | 6.94e-08 | 10 |
embryo | 5.67e-07 | 320 |