FFCP PHASE1:Mm9::chr3:80606573..80606594,-: Difference between revisions
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{{FFCP|EntrezGene=14800|HGNC=|MCL_coexpression_id=2|UniProt=G5E8H1,E9QKC0,P23819,Q4LG64,Q80VM6|association_with_transcript=118bp_to_ENSMUST00000075316,ENSMUST00000107745,ENSMUST00000107746,NM_001039195,NM_001083806,NM_013540,uc008poa.1,uc008pob.1,uc008poc.1,uc008pod.1,uc008poe.1_5end|description=CAGE_peak_3_at_Gria2_5end|id=chr3:80606573..80606594,-|ontology_enrichment_celltype=CL:0000540!3.03e-15!33;CL:0000047!3.03e-15!33;CL:0000031!3.03e-15!33;CL:0000404!3.03e-15!33;CL:0000117!2.00e-13!23;CL:0000337!2.00e-13!23;CL:0002319!4.86e-11!43;CL:0000221!5.84e-11!44;CL:0000133!5.84e-11!44;CL:0000393!1.14e-10!39;CL:0000211!1.14e-10!39;CL:0000055!1.50e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.44e-17,33;CL:0000047,1.44e-17,33;CL:0000031,1.44e-17,33;CL:0000404,1.44e-17,33;CL:0000117,3.83e-17,23;CL:0000337,3.83e-17,23;CL:0000393,2.97e-13,39;CL:0000211,2.97e-13,39;CL:0002319,4.28e-11,43;CL:0000221,1.27e-10,44;CL:0000133,1.27e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.81e-30!71;UBERON:0003075!1.81e-30!71;UBERON:0007284!1.81e-30!71;UBERON:0001017!2.61e-30!73;UBERON:0005743!2.61e-30!73;UBERON:0000073!5.89e-30!75;UBERON:0001016!5.89e-30!75;UBERON:0004121!2.55e-29!102;UBERON:0000924!2.55e-29!102;UBERON:0006601!2.55e-29!102;UBERON:0000033!3.67e-26!63;UBERON:0001049!4.50e-26!52;UBERON:0005068!4.50e-26!52;UBERON:0006241!4.50e-26!52;UBERON:0007135!4.50e-26!52;UBERON:0000955!7.14e-25!50;UBERON:0006238!7.14e-25!50;UBERON:0002616!5.26e-24!49;UBERON:0003056!1.90e-22!49;UBERON:0002020!1.71e-20!34;UBERON:0003080!2.76e-20!40;UBERON:0002780!1.49e-19!39;UBERON:0001890!1.49e-19!39;UBERON:0006240!1.49e-19!39;UBERON:0002791!2.67e-17!29;UBERON:0003528!2.67e-17!29;UBERON:0001893!2.67e-17!29;UBERON:0007811!2.23e-13!86;UBERON:0000153!2.95e-13!94;UBERON:0000956!1.08e-12!21;UBERON:0001869!1.08e-12!21;UBERON:0000203!1.08e-12!21;UBERON:0002619!3.21e-10!17;UBERON:0002021!6.42e-09!10;UBERON:0000411!6.42e-09!10;UBERON:0001950!6.42e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.03e-34,73;UBERON:0001016,2.79e-32,75;UBERON:0000073,1.78e-31,54;UBERON:0002346,3.45e-31,64;UBERON:0003075,3.45e-31,64;UBERON:0007284,3.45e-31,64;UBERON:0001049,9.43e-30,52;UBERON:0005068,9.43e-30,52;UBERON:0006241,9.43e-30,52;UBERON:0007135,9.43e-30,52;UBERON:0004121,5.99e-27,95;UBERON:0000924,5.99e-27,95;UBERON:0006601,5.99e-27,95;UBERON:0002020,7.30e-26,34;UBERON:0000955,1.14e-25,47;UBERON:0006238,1.14e-25,47;UBERON:0010371,6.82e-25,73;UBERON:0002616,1.35e-24,46;UBERON:0003056,3.16e-23,49;UBERON:0003080,6.50e-23,40;UBERON:0002780,5.58e-22,39;UBERON:0001890,5.58e-22,39;UBERON:0006240,5.58e-22,39;UBERON:0003528,1.13e-21,29;UBERON:0002791,1.13e-21,29;UBERON:0001893,1.13e-21,29;UBERON:0010314,1.20e-18,92;UBERON:0000956,1.25e-15,21;UBERON:0001869,1.25e-15,21;UBERON:0000203,1.25e-15,21;UBERON:0002619,2.15e-12,17;UBERON:0002021,3.17e-11,10;UBERON:0000411,3.17e-11,10;UBERON:0001950,3.17e-11,10;UBERON:0003076,3.08e-07,12;UBERON:0003057,3.08e-07,12;UBERON:0002420,3.45e-07,8;UBERON:0007245,3.45e-07,8;UBERON:0010009,3.45e-07,8;UBERON:0010011,3.45e-07,8;UBERON:0000454,3.45e-07,8|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.69493507722195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,6.87875966922632,9.52183762689659,3.1691570175309,0,0,0,0,0,0,0,11.8206158031665,7.42532660824299,8.41299845405528,5.99867067247988,7.73039893330647,9.67677313798137,4.2172007248024,8.27296907949019,9.91042928994498,10.9811110753261,11.2132769277058,6.06676923558892,6.22115976496386,9.89735404057844,2.51264699101243,16.8828783009504,16.5022107598955,22.3917724959987,26.6235043094322,15.6575534493252,0.151452386666368,0.0755715601067855,0,0,0,0,0,0,0.702222100658759,0,0,0,0.14084341977668,0,0,0,0,0,0,1.37020655662872,0,2.22663208597237,0.693941307064543,1.21786191324856,0.691846491768175,1.05505848386836,1.64624189989987,0.502666365318702,0,0,0,0.161766849947409,0,0.484875253135222,0,16.3957246326466,18.6407569063975,0,0,0,0,25.4644086988199,69.5400916284312,20.7329680986226,67.0961875942187,65.4631570765646,24.3112012134685,46.5632425004464,0.101839363850316,0.373220911830279,4.0435641349388,1.89397670297827,0.260240885925407,0.459804208866946,0.540186389416048,2.41127708537144,3.26575195926374,4.99643509110914,4.31027932974753,10.3481348295606,0,0.378212160335639,0.527853372491847,0.219195732427575,1.66828349535359,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0.938104239924385,0,0,0,0,0,0,0,0,0,0,0,0,0,105.355264230628,20.1693040263397,0,0,0.639864751605702,0.928946687441754,0.128867461322093,0,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0.198956472041151,0.974820435595601,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,10.9174401191699,12.6588621519579,0,0,1.26203287766503,1.17131623288992,2.80050417052639,0.716906393857656,2.00518806674155,1.69845918473299,1.21443210502468,4.38383786866968,6.7198922250909,80.6516504218736,0,0.35613120733451,0.651547837414304,0,0,0,0,0.565815239267694,0,0.307435147943927,0.516856586336442,0,0,0,0,0,3.40439605753788,0.36012218806262,0.258717367565509,0.428674070063185,3.01478397191865,1.07021290561242,3.9491764944509,1.8267896946876,0,0,0,0,0.322928853391811,0.120625849856312,0,0,0.291480836629851,11.4963687246516,0,0,0.185194527369712,0,0,0,0,0,0.138199973804424,0,0,0.609958401380546,0.216010681643603,0.209088296014469,0,0.269728692769641,0.330613822901344,0,0.129614973291793,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0.194915761479505,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0.183151624267265,0,0,58.1694397895579,58.0009797999043,52.7063872364245,48.4625974209199,61.6574267793578,59.6761178937863,52.6517550180809,46.8334051353189,57.0959435320098,48.1517089929193,0.207574695168353,3.59122386060928,3.07320490357441,4.37592090722929,2.30574478890781,3.49302666055027,4.88942801163553,4.53277125925567,6.4183841918363,4.29585259998456,5.57654459758527,5.84741658296836,5.24392441831341,5.89031402124797,5.16919220600519,3.81034953026459,4.75125736373908,5.01563973205633,5.76920261124629,4.85756436443511,4.11443102862498,4.96932257246145,3.81497903915713,5.37781741539616,6.02300034658116,5.33072029717562,6.40247905054704,4.73525480588117,5.16055632614275,5.61142271657738,6.16902094245706,4.13718825977367,2.86461730218783,4.64810523557898,3.47231899766054,5.74564329257276,4.67863216890817,4.08255002691767,2.29545998482612,2.42650561031467,0.231867835620421|short_description=p3@Gria2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14800 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G5E8H1,uniprot:E9QKC0,uniprot:P23819,uniprot:Q4LG64,uniprot:Q80VM6 | |||
|association_with_transcript=118bp_to_ENSMUST00000075316,ENSMUST00000107745,ENSMUST00000107746,NM_001039195,NM_001083806,NM_013540,uc008poa.1,uc008pob.1,uc008poc.1,uc008pod.1,uc008poe.1_5end | |||
|cluster_id=chr3:80606573..80606594,- | |||
|description=CAGE_peak_3_at_Gria2_5end | |||
|id=chr3:80606573..80606594,- | |||
|ontology_enrichment_celltype=CL:0000540!3.03e-15!33;CL:0000047!3.03e-15!33;CL:0000031!3.03e-15!33;CL:0000404!3.03e-15!33;CL:0000117!2.00e-13!23;CL:0000337!2.00e-13!23;CL:0002319!4.86e-11!43;CL:0000221!5.84e-11!44;CL:0000133!5.84e-11!44;CL:0000393!1.14e-10!39;CL:0000211!1.14e-10!39;CL:0000055!1.50e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.44e-17,33;CL:0000047,1.44e-17,33;CL:0000031,1.44e-17,33;CL:0000404,1.44e-17,33;CL:0000117,3.83e-17,23;CL:0000337,3.83e-17,23;CL:0000393,2.97e-13,39;CL:0000211,2.97e-13,39;CL:0002319,4.28e-11,43;CL:0000221,1.27e-10,44;CL:0000133,1.27e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.81e-30!71;UBERON:0003075!1.81e-30!71;UBERON:0007284!1.81e-30!71;UBERON:0001017!2.61e-30!73;UBERON:0005743!2.61e-30!73;UBERON:0000073!5.89e-30!75;UBERON:0001016!5.89e-30!75;UBERON:0004121!2.55e-29!102;UBERON:0000924!2.55e-29!102;UBERON:0006601!2.55e-29!102;UBERON:0000033!3.67e-26!63;UBERON:0001049!4.50e-26!52;UBERON:0005068!4.50e-26!52;UBERON:0006241!4.50e-26!52;UBERON:0007135!4.50e-26!52;UBERON:0000955!7.14e-25!50;UBERON:0006238!7.14e-25!50;UBERON:0002616!5.26e-24!49;UBERON:0003056!1.90e-22!49;UBERON:0002020!1.71e-20!34;UBERON:0003080!2.76e-20!40;UBERON:0002780!1.49e-19!39;UBERON:0001890!1.49e-19!39;UBERON:0006240!1.49e-19!39;UBERON:0002791!2.67e-17!29;UBERON:0003528!2.67e-17!29;UBERON:0001893!2.67e-17!29;UBERON:0007811!2.23e-13!86;UBERON:0000153!2.95e-13!94;UBERON:0000956!1.08e-12!21;UBERON:0001869!1.08e-12!21;UBERON:0000203!1.08e-12!21;UBERON:0002619!3.21e-10!17;UBERON:0002021!6.42e-09!10;UBERON:0000411!6.42e-09!10;UBERON:0001950!6.42e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.03e-34,73;UBERON:0001016,2.79e-32,75;UBERON:0000073,1.78e-31,54;UBERON:0002346,3.45e-31,64;UBERON:0003075,3.45e-31,64;UBERON:0007284,3.45e-31,64;UBERON:0001049,9.43e-30,52;UBERON:0005068,9.43e-30,52;UBERON:0006241,9.43e-30,52;UBERON:0007135,9.43e-30,52;UBERON:0004121,5.99e-27,95;UBERON:0000924,5.99e-27,95;UBERON:0006601,5.99e-27,95;UBERON:0002020,7.30e-26,34;UBERON:0000955,1.14e-25,47;UBERON:0006238,1.14e-25,47;UBERON:0010371,6.82e-25,73;UBERON:0002616,1.35e-24,46;UBERON:0003056,3.16e-23,49;UBERON:0003080,6.50e-23,40;UBERON:0002780,5.58e-22,39;UBERON:0001890,5.58e-22,39;UBERON:0006240,5.58e-22,39;UBERON:0003528,1.13e-21,29;UBERON:0002791,1.13e-21,29;UBERON:0001893,1.13e-21,29;UBERON:0010314,1.20e-18,92;UBERON:0000956,1.25e-15,21;UBERON:0001869,1.25e-15,21;UBERON:0000203,1.25e-15,21;UBERON:0002619,2.15e-12,17;UBERON:0002021,3.17e-11,10;UBERON:0000411,3.17e-11,10;UBERON:0001950,3.17e-11,10;UBERON:0003076,3.08e-07,12;UBERON:0003057,3.08e-07,12;UBERON:0002420,3.45e-07,8;UBERON:0007245,3.45e-07,8;UBERON:0010009,3.45e-07,8;UBERON:0010011,3.45e-07,8;UBERON:0000454,3.45e-07,8 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.69493507722195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,6.87875966922632,9.52183762689659,3.1691570175309,0,0,0,0,0,0,0,11.8206158031665,7.42532660824299,8.41299845405528,5.99867067247988,7.73039893330647,9.67677313798137,4.2172007248024,8.27296907949019,9.91042928994498,10.9811110753261,11.2132769277058,6.06676923558892,6.22115976496386,9.89735404057844,2.51264699101243,16.8828783009504,16.5022107598955,22.3917724959987,26.6235043094322,15.6575534493252,0.151452386666368,0.0755715601067855,0,0,0,0,0,0,0.702222100658759,0,0,0,0.14084341977668,0,0,0,0,0,0,1.37020655662872,0,2.22663208597237,0.693941307064543,1.21786191324856,0.691846491768175,1.05505848386836,1.64624189989987,0.502666365318702,0,0,0,0.161766849947409,0,0.484875253135222,0,16.3957246326466,18.6407569063975,0,0,0,0,25.4644086988199,69.5400916284312,20.7329680986226,67.0961875942187,65.4631570765646,24.3112012134685,46.5632425004464,0.101839363850316,0.373220911830279,4.0435641349388,1.89397670297827,0.260240885925407,0.459804208866946,0.540186389416048,2.41127708537144,3.26575195926374,4.99643509110914,4.31027932974753,10.3481348295606,0,0.378212160335639,0.527853372491847,0.219195732427575,1.66828349535359,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0.938104239924385,0,0,0,0,0,0,0,0,0,0,0,0,0,105.355264230628,20.1693040263397,0,0,0.639864751605702,0.928946687441754,0.128867461322093,0,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0.198956472041151,0.974820435595601,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,10.9174401191699,12.6588621519579,0,0,1.26203287766503,1.17131623288992,2.80050417052639,0.716906393857656,2.00518806674155,1.69845918473299,1.21443210502468,4.38383786866968,6.7198922250909,80.6516504218736,0,0.35613120733451,0.651547837414304,0,0,0,0,0.565815239267694,0,0.307435147943927,0.516856586336442,0,0,0,0,0,3.40439605753788,0.36012218806262,0.258717367565509,0.428674070063185,3.01478397191865,1.07021290561242,3.9491764944509,1.8267896946876,0,0,0,0,0.322928853391811,0.120625849856312,0,0,0.291480836629851,11.4963687246516,0,0,0.185194527369712,0,0,0,0,0,0.138199973804424,0,0,0.609958401380546,0.216010681643603,0.209088296014469,0,0.269728692769641,0.330613822901344,0,0.129614973291793,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0.194915761479505,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0.183151624267265,0,0,58.1694397895579,58.0009797999043,52.7063872364245,48.4625974209199,61.6574267793578,59.6761178937863,52.6517550180809,46.8334051353189,57.0959435320098,48.1517089929193,0.207574695168353,3.59122386060928,3.07320490357441,4.37592090722929,2.30574478890781,3.49302666055027,4.88942801163553,4.53277125925567,6.4183841918363,4.29585259998456,5.57654459758527,5.84741658296836,5.24392441831341,5.89031402124797,5.16919220600519,3.81034953026459,4.75125736373908,5.01563973205633,5.76920261124629,4.85756436443511,4.11443102862498,4.96932257246145,3.81497903915713,5.37781741539616,6.02300034658116,5.33072029717562,6.40247905054704,4.73525480588117,5.16055632614275,5.61142271657738,6.16902094245706,4.13718825977367,2.86461730218783,4.64810523557898,3.47231899766054,5.74564329257276,4.67863216890817,4.08255002691767,2.29545998482612,2.42650561031467,0.231867835620421 | |||
|short_description=p3@Gria2 | |||
}} |
Revision as of 01:16, 4 August 2015
Short description: | p3@Gria2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gria2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 118bp_to_ENSMUST00000075316, ENSMUST00000107745, ENSMUST00000107746, NM_001039195, NM_001083806, NM_013540, uc008poa.1, uc008pob.1, uc008poc.1, uc008pod.1, uc008poe.1_5end |
EntrezGene: | 14800 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.44e-17 | 33 |
neuronal stem cell | 1.44e-17 | 33 |
neuroblast | 1.44e-17 | 33 |
electrically signaling cell | 1.44e-17 | 33 |
CNS neuron (sensu Vertebrata) | 3.83e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.83e-17 | 23 |
electrically responsive cell | 2.97e-13 | 39 |
electrically active cell | 2.97e-13 | 39 |
neural cell | 4.28e-11 | 43 |
ectodermal cell | 1.27e-10 | 44 |
neurectodermal cell | 1.27e-10 | 44 |