FFCP PHASE1:Mm9::chr14:118636214..118636235,-: Difference between revisions
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{{FFCP|EntrezGene=223227|HGNC=|MCL_coexpression_id=2092|UniProt=Q811W0|association_with_transcript=16bp_to_ENSMUST00000170662,NM_177753,uc007uyt.2_5end|description=CAGE_peak_1_at_Sox21_5end|id=chr14:118636214..118636235,-|ontology_enrichment_celltype=CL:0000117!1.42e-12!23;CL:0000337!1.42e-12!23;CL:0000221!6.12e-10!44;CL:0000133!6.12e-10!44;CL:0002319!2.14e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.78e-15,23;CL:0000337,1.78e-15,23;CL:0000221,1.18e-12,44;CL:0000133,1.18e-12,44;CL:0002319,5.87e-12,43;CL:0000540,2.77e-09,33;CL:0000047,2.77e-09,33;CL:0000031,2.77e-09,33;CL:0000404,2.77e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.89e-18!73;UBERON:0005743!1.89e-18!73;UBERON:0001049!2.43e-18!52;UBERON:0005068!2.43e-18!52;UBERON:0006241!2.43e-18!52;UBERON:0007135!2.43e-18!52;UBERON:0000073!4.00e-18!75;UBERON:0001016!4.00e-18!75;UBERON:0000955!9.00e-17!50;UBERON:0006238!9.00e-17!50;UBERON:0002616!2.04e-16!49;UBERON:0004121!2.27e-16!102;UBERON:0000924!2.27e-16!102;UBERON:0006601!2.27e-16!102;UBERON:0000033!6.22e-16!63;UBERON:0002020!6.60e-16!34;UBERON:0003080!9.45e-14!40;UBERON:0002791!2.12e-13!29;UBERON:0003528!2.12e-13!29;UBERON:0001893!2.12e-13!29;UBERON:0002780!2.50e-13!39;UBERON:0001890!2.50e-13!39;UBERON:0006240!2.50e-13!39;UBERON:0003056!7.23e-12!49;UBERON:0002346!1.17e-10!71;UBERON:0003075!1.17e-10!71;UBERON:0007284!1.17e-10!71;UBERON:0007811!2.87e-10!86;UBERON:0000956!6.25e-10!21;UBERON:0001869!6.25e-10!21;UBERON:0000203!6.25e-10!21;UBERON:0000153!1.55e-09!94;UBERON:0000064!5.38e-08!99;UBERON:0002619!9.49e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.67e-23,73;UBERON:0001016,8.76e-22,75;UBERON:0000073,2.48e-21,54;UBERON:0004121,1.20e-20,95;UBERON:0000924,1.20e-20,95;UBERON:0006601,1.20e-20,95;UBERON:0001049,1.71e-20,52;UBERON:0005068,1.71e-20,52;UBERON:0006241,1.71e-20,52;UBERON:0007135,1.71e-20,52;UBERON:0002020,1.09e-19,34;UBERON:0010371,9.96e-18,73;UBERON:0000955,2.90e-17,47;UBERON:0006238,2.90e-17,47;UBERON:0002616,7.85e-17,46;UBERON:0003528,1.61e-16,29;UBERON:0002791,1.61e-16,29;UBERON:0001893,1.61e-16,29;UBERON:0003080,1.45e-15,40;UBERON:0002780,4.88e-15,39;UBERON:0001890,4.88e-15,39;UBERON:0006240,4.88e-15,39;UBERON:0002346,1.43e-13,64;UBERON:0003075,1.43e-13,64;UBERON:0007284,1.43e-13,64;UBERON:0000956,3.90e-12,21;UBERON:0001869,3.90e-12,21;UBERON:0000203,3.90e-12,21;UBERON:0003056,1.87e-10,49;UBERON:0002619,2.20e-09,17;UBERON:0010314,4.61e-07,92|phase1_expression=10.5698239089164,0,0,0.30246421130683,0,1.34303417529512,0,0,0,0.468129052643987,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0.45881856213434,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0.782391344348039,32.2677231443061,3.95435128922049,4.27745777963423,11.3389001516544,24.4379359420452,0,0,0,0,0,0,25.6941905291689,29.0945038599618,27.8885817542719,1.35537812827653,1.77858959222228,0,0,0,19.7736072942147,29.9690278150813,13.4796496001021,13.2305819565057,14.0917724105426,7.42692559449889,9.93908434282261,10.1667363348412,8.72193786265951,8.27296907949019,3.30347642998166,4.08599481872601,3.99376986466233,10.1552441552249,7.31901148819277,5.73004707612436,3.62937898701795,6.19038871034848,6.1119299110724,9.42811473515737,4.41352210477219,8.01517617048792,0.227178579999552,0.151143120213571,0,0,0,0,0,0,1.26399978118577,0,0,0,22.1124169049388,0,0,0,22.9480503471887,24.5759069510846,36.9032844860792,1.94112595522402,0,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,9.31958806090611,1.46390398505774,1.8850203613211,0.510914110417183,0,0,0,5.39246301857362,5.49000723382352,5.27748278874031,6.60532416730651,6.13717097592793,5.40248915854856,3.24482526135515,0,0.124406970610093,0,0.210441855886474,0.390361328888111,0,0.180062129805349,0.60281927134286,0.204109497453984,0.2562274405697,0.187403449119458,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0.556094498451196,1.39300866608867,3.70407845534298,0,0,0,0,0.207125772535502,0,0.180062061461015,0.23674473558521,0,0.308534225774757,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0,6.30869845692382,3.49875682089567,0,0,0.426576501070468,0,0.128867461322093,0,0.444756087689741,0,0,0,0,0.397912944082302,0.38992817423824,0,0.432276099749388,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0.393117990226406,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.554259570499814,0.757965647081939,1.30371981153621,1.18821560042632,0.704070744865506,0.502518772325447,0.714130922658041,0.780534591431195,0.315270288212382,0,0.637819074629948,2.29408640602033,0.518054945597687,0,0,0,0.491764273019036,0.275936746304732,4.0137647496948,1.99259867206745,0,0,0,0,0,0,0,0,0,0,0,3.85585579706168,0.425820255624806,0,0,0.164970122972535,0,0,0.604647113929502,0,0,0,0.516856586336442,0,0,0,1.05418608574999,0,0,1.8006109403131,3.75140182969988,2.14337035031592,0.532020700926821,0.178368817602071,0.329098041204242,1.2178597964584,0.23467170806371,0.63549621259146,0,33.6367956000619,17.7610869365496,31.8452243620663,57.776214497518,55.1513423143406,0,4.82105785227325,0,0.619160603889667,0,0,0,0,0,0,0,28.6401185404534,5.852215881251,13.419084830372,18.6849239621716,22.1633593775337,21.6178938108716,25.6242258131159,19.5888690069046,25.6520823144349,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0.632022241256357,0.202725215290164,0.308132871494482,0.129920822977795,0.179026695667481,0.198681354781265,0.600977247599844,0.147689527174577,0,0.0762068066549998,0.100826185136841,0.194915761479505,0.384847366561318,0.350630706544707,8.84248496099324,13.5411431558179,52.3031784033243,8.05846158547577,0,0,0,3.21552568618599,0,3.95326289831947,3.22227665555024,2.86447756719698,4.29632955859219,6.16574267793578,3.7769694869485,3.37511250115903,4.95353323546643,8.60970577069989,8.80192529978094,5.08558003162466,5.1873233542134,3.58540572083682,2.18796045361465,3.98265008993166,3.30918315210025,2.22246727801615,2.67845574410562,4.1719497246936,3.03236654116557,2.78827229879264,1.69763707247469,1.77918864192777,2.17685518176556,1.43588672389033,0.952587382566147,1.27472758539341,1.35036454324594,2.88460130562315,2.06078488188156,1.71434626192708,2.8396128985494,1.66905332963125,2.0348498328526,2.1645157495526,1.86152137361688,1.46342378298218,1.05227884575137,2.17286582153379,1.68342681497322,2.37270036248348,1.28055827088233,0.818462086339379,0.619747364743864,2.89359916471712,8.49355964989016,4.67863216890817,6.87587372954555,1.72159498861959,10.1472052794977,0.231867835620421|short_description=p1@Sox21}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:223227 | |||
|HGNC= | |||
|MCL_coexpression_id=2092 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q811W0 | |||
|association_with_transcript=16bp_to_ENSMUST00000170662,NM_177753,uc007uyt.2_5end | |||
|cluster_id=chr14:118636214..118636235,- | |||
|description=CAGE_peak_1_at_Sox21_5end | |||
|id=chr14:118636214..118636235,- | |||
|ontology_enrichment_celltype=CL:0000117!1.42e-12!23;CL:0000337!1.42e-12!23;CL:0000221!6.12e-10!44;CL:0000133!6.12e-10!44;CL:0002319!2.14e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.78e-15,23;CL:0000337,1.78e-15,23;CL:0000221,1.18e-12,44;CL:0000133,1.18e-12,44;CL:0002319,5.87e-12,43;CL:0000540,2.77e-09,33;CL:0000047,2.77e-09,33;CL:0000031,2.77e-09,33;CL:0000404,2.77e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.89e-18!73;UBERON:0005743!1.89e-18!73;UBERON:0001049!2.43e-18!52;UBERON:0005068!2.43e-18!52;UBERON:0006241!2.43e-18!52;UBERON:0007135!2.43e-18!52;UBERON:0000073!4.00e-18!75;UBERON:0001016!4.00e-18!75;UBERON:0000955!9.00e-17!50;UBERON:0006238!9.00e-17!50;UBERON:0002616!2.04e-16!49;UBERON:0004121!2.27e-16!102;UBERON:0000924!2.27e-16!102;UBERON:0006601!2.27e-16!102;UBERON:0000033!6.22e-16!63;UBERON:0002020!6.60e-16!34;UBERON:0003080!9.45e-14!40;UBERON:0002791!2.12e-13!29;UBERON:0003528!2.12e-13!29;UBERON:0001893!2.12e-13!29;UBERON:0002780!2.50e-13!39;UBERON:0001890!2.50e-13!39;UBERON:0006240!2.50e-13!39;UBERON:0003056!7.23e-12!49;UBERON:0002346!1.17e-10!71;UBERON:0003075!1.17e-10!71;UBERON:0007284!1.17e-10!71;UBERON:0007811!2.87e-10!86;UBERON:0000956!6.25e-10!21;UBERON:0001869!6.25e-10!21;UBERON:0000203!6.25e-10!21;UBERON:0000153!1.55e-09!94;UBERON:0000064!5.38e-08!99;UBERON:0002619!9.49e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.67e-23,73;UBERON:0001016,8.76e-22,75;UBERON:0000073,2.48e-21,54;UBERON:0004121,1.20e-20,95;UBERON:0000924,1.20e-20,95;UBERON:0006601,1.20e-20,95;UBERON:0001049,1.71e-20,52;UBERON:0005068,1.71e-20,52;UBERON:0006241,1.71e-20,52;UBERON:0007135,1.71e-20,52;UBERON:0002020,1.09e-19,34;UBERON:0010371,9.96e-18,73;UBERON:0000955,2.90e-17,47;UBERON:0006238,2.90e-17,47;UBERON:0002616,7.85e-17,46;UBERON:0003528,1.61e-16,29;UBERON:0002791,1.61e-16,29;UBERON:0001893,1.61e-16,29;UBERON:0003080,1.45e-15,40;UBERON:0002780,4.88e-15,39;UBERON:0001890,4.88e-15,39;UBERON:0006240,4.88e-15,39;UBERON:0002346,1.43e-13,64;UBERON:0003075,1.43e-13,64;UBERON:0007284,1.43e-13,64;UBERON:0000956,3.90e-12,21;UBERON:0001869,3.90e-12,21;UBERON:0000203,3.90e-12,21;UBERON:0003056,1.87e-10,49;UBERON:0002619,2.20e-09,17;UBERON:0010314,4.61e-07,92 | |||
|phase1_expression=10.5698239089164,0,0,0.30246421130683,0,1.34303417529512,0,0,0,0.468129052643987,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0.45881856213434,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0.782391344348039,32.2677231443061,3.95435128922049,4.27745777963423,11.3389001516544,24.4379359420452,0,0,0,0,0,0,25.6941905291689,29.0945038599618,27.8885817542719,1.35537812827653,1.77858959222228,0,0,0,19.7736072942147,29.9690278150813,13.4796496001021,13.2305819565057,14.0917724105426,7.42692559449889,9.93908434282261,10.1667363348412,8.72193786265951,8.27296907949019,3.30347642998166,4.08599481872601,3.99376986466233,10.1552441552249,7.31901148819277,5.73004707612436,3.62937898701795,6.19038871034848,6.1119299110724,9.42811473515737,4.41352210477219,8.01517617048792,0.227178579999552,0.151143120213571,0,0,0,0,0,0,1.26399978118577,0,0,0,22.1124169049388,0,0,0,22.9480503471887,24.5759069510846,36.9032844860792,1.94112595522402,0,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,9.31958806090611,1.46390398505774,1.8850203613211,0.510914110417183,0,0,0,5.39246301857362,5.49000723382352,5.27748278874031,6.60532416730651,6.13717097592793,5.40248915854856,3.24482526135515,0,0.124406970610093,0,0.210441855886474,0.390361328888111,0,0.180062129805349,0.60281927134286,0.204109497453984,0.2562274405697,0.187403449119458,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0.556094498451196,1.39300866608867,3.70407845534298,0,0,0,0,0.207125772535502,0,0.180062061461015,0.23674473558521,0,0.308534225774757,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0,6.30869845692382,3.49875682089567,0,0,0.426576501070468,0,0.128867461322093,0,0.444756087689741,0,0,0,0,0.397912944082302,0.38992817423824,0,0.432276099749388,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0.393117990226406,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.554259570499814,0.757965647081939,1.30371981153621,1.18821560042632,0.704070744865506,0.502518772325447,0.714130922658041,0.780534591431195,0.315270288212382,0,0.637819074629948,2.29408640602033,0.518054945597687,0,0,0,0.491764273019036,0.275936746304732,4.0137647496948,1.99259867206745,0,0,0,0,0,0,0,0,0,0,0,3.85585579706168,0.425820255624806,0,0,0.164970122972535,0,0,0.604647113929502,0,0,0,0.516856586336442,0,0,0,1.05418608574999,0,0,1.8006109403131,3.75140182969988,2.14337035031592,0.532020700926821,0.178368817602071,0.329098041204242,1.2178597964584,0.23467170806371,0.63549621259146,0,33.6367956000619,17.7610869365496,31.8452243620663,57.776214497518,55.1513423143406,0,4.82105785227325,0,0.619160603889667,0,0,0,0,0,0,0,28.6401185404534,5.852215881251,13.419084830372,18.6849239621716,22.1633593775337,21.6178938108716,25.6242258131159,19.5888690069046,25.6520823144349,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0.632022241256357,0.202725215290164,0.308132871494482,0.129920822977795,0.179026695667481,0.198681354781265,0.600977247599844,0.147689527174577,0,0.0762068066549998,0.100826185136841,0.194915761479505,0.384847366561318,0.350630706544707,8.84248496099324,13.5411431558179,52.3031784033243,8.05846158547577,0,0,0,3.21552568618599,0,3.95326289831947,3.22227665555024,2.86447756719698,4.29632955859219,6.16574267793578,3.7769694869485,3.37511250115903,4.95353323546643,8.60970577069989,8.80192529978094,5.08558003162466,5.1873233542134,3.58540572083682,2.18796045361465,3.98265008993166,3.30918315210025,2.22246727801615,2.67845574410562,4.1719497246936,3.03236654116557,2.78827229879264,1.69763707247469,1.77918864192777,2.17685518176556,1.43588672389033,0.952587382566147,1.27472758539341,1.35036454324594,2.88460130562315,2.06078488188156,1.71434626192708,2.8396128985494,1.66905332963125,2.0348498328526,2.1645157495526,1.86152137361688,1.46342378298218,1.05227884575137,2.17286582153379,1.68342681497322,2.37270036248348,1.28055827088233,0.818462086339379,0.619747364743864,2.89359916471712,8.49355964989016,4.67863216890817,6.87587372954555,1.72159498861959,10.1472052794977,0.231867835620421 | |||
|short_description=p1@Sox21 | |||
}} |
Revision as of 23:31, 3 August 2015
Short description: | p1@Sox21 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox21_5end |
Coexpression cluster: | MCL_coexpression_mm9:2092 |
Association with transcript: | 16bp_to_ENSMUST00000170662, NM_177753, uc007uyt.2_5end |
EntrezGene: | 223227 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.78e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.78e-15 | 23 |
ectodermal cell | 1.18e-12 | 44 |
neurectodermal cell | 1.18e-12 | 44 |
neural cell | 5.87e-12 | 43 |
neuron | 2.77e-09 | 33 |
neuronal stem cell | 2.77e-09 | 33 |
neuroblast | 2.77e-09 | 33 |
electrically signaling cell | 2.77e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.67e-23 | 73 |
nervous system | 8.76e-22 | 75 |
regional part of nervous system | 2.48e-21 | 54 |
ectoderm-derived structure | 1.20e-20 | 95 |
ectoderm | 1.20e-20 | 95 |
presumptive ectoderm | 1.20e-20 | 95 |
neural tube | 1.71e-20 | 52 |
neural rod | 1.71e-20 | 52 |
future spinal cord | 1.71e-20 | 52 |
neural keel | 1.71e-20 | 52 |
gray matter | 1.09e-19 | 34 |
ecto-epithelium | 9.96e-18 | 73 |
brain | 2.90e-17 | 47 |
future brain | 2.90e-17 | 47 |
regional part of brain | 7.85e-17 | 46 |
brain grey matter | 1.61e-16 | 29 |
regional part of telencephalon | 1.61e-16 | 29 |
telencephalon | 1.61e-16 | 29 |
anterior neural tube | 1.45e-15 | 40 |
regional part of forebrain | 4.88e-15 | 39 |
forebrain | 4.88e-15 | 39 |
future forebrain | 4.88e-15 | 39 |
neurectoderm | 1.43e-13 | 64 |
neural plate | 1.43e-13 | 64 |
presumptive neural plate | 1.43e-13 | 64 |
cerebral cortex | 3.90e-12 | 21 |
cerebral hemisphere | 3.90e-12 | 21 |
pallium | 3.90e-12 | 21 |
pre-chordal neural plate | 1.87e-10 | 49 |
regional part of cerebral cortex | 2.20e-09 | 17 |
structure with developmental contribution from neural crest | 4.61e-07 | 92 |