FFCP PHASE1:Mm9::chr14:104049425..104049460,+: Difference between revisions
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{{FFCP|EntrezGene=105439|HGNC=|MCL_coexpression_id=20|UniProt=Q68FF7|association_with_transcript=0bp_to_ENSMUST00000069443,NM_198014,uc007uws.1,uc007uwt.1_5end|description=CAGE_peak_1_at_Slain1_5end|id=chr14:104049425..104049460,+|ontology_enrichment_celltype=CL:0000540!4.93e-14!33;CL:0000047!4.93e-14!33;CL:0000031!4.93e-14!33;CL:0000404!4.93e-14!33;CL:0000221!7.20e-13!44;CL:0000133!7.20e-13!44;CL:0002319!1.21e-12!43;CL:0000117!3.90e-12!23;CL:0000337!3.90e-12!23;CL:0000393!4.31e-08!39;CL:0000211!4.31e-08!39;CL:0000055!4.17e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.68e-14,33;CL:0000047,4.68e-14,33;CL:0000031,4.68e-14,33;CL:0000404,4.68e-14,33;CL:0000221,6.88e-13,44;CL:0000133,6.88e-13,44;CL:0002319,1.16e-12,43;CL:0000117,3.73e-12,23;CL:0000337,3.73e-12,23;CL:0000393,3.00e-08,39;CL:0000211,3.00e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.84e-29!73;UBERON:0005743!5.84e-29!73;UBERON:0000073!1.18e-27!75;UBERON:0001016!1.18e-27!75;UBERON:0007811!9.45e-26!86;UBERON:0004121!1.92e-23!102;UBERON:0000924!1.92e-23!102;UBERON:0006601!1.92e-23!102;UBERON:0000033!3.94e-22!63;UBERON:0000153!4.62e-22!94;UBERON:0000955!5.20e-21!50;UBERON:0006238!5.20e-21!50;UBERON:0001049!6.53e-21!52;UBERON:0005068!6.53e-21!52;UBERON:0006241!6.53e-21!52;UBERON:0007135!6.53e-21!52;UBERON:0002616!1.92e-20!49;UBERON:0002346!1.92e-18!71;UBERON:0003075!1.92e-18!71;UBERON:0007284!1.92e-18!71;UBERON:0003056!4.43e-18!49;UBERON:0003080!1.08e-16!40;UBERON:0002020!1.78e-16!34;UBERON:0002780!5.27e-16!39;UBERON:0001890!5.27e-16!39;UBERON:0006240!5.27e-16!39;UBERON:0002791!6.47e-15!29;UBERON:0003528!6.47e-15!29;UBERON:0001893!6.47e-15!29;UBERON:0000064!5.67e-12!99;UBERON:0000956!1.58e-10!21;UBERON:0001869!1.58e-10!21;UBERON:0000203!1.58e-10!21;UBERON:0002619!1.03e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.23e-29,73;UBERON:0004121,3.85e-28,95;UBERON:0000924,3.85e-28,95;UBERON:0006601,3.85e-28,95;UBERON:0001016,1.06e-27,75;UBERON:0002346,9.77e-24,64;UBERON:0003075,9.77e-24,64;UBERON:0007284,9.77e-24,64;UBERON:0010371,1.19e-23,73;UBERON:0000073,2.84e-22,54;UBERON:0001049,6.04e-21,52;UBERON:0005068,6.04e-21,52;UBERON:0006241,6.04e-21,52;UBERON:0007135,6.04e-21,52;UBERON:0000955,5.31e-19,47;UBERON:0006238,5.31e-19,47;UBERON:0002616,1.91e-18,46;UBERON:0003056,4.15e-18,49;UBERON:0003080,1.01e-16,40;UBERON:0002020,1.68e-16,34;UBERON:0002780,4.97e-16,39;UBERON:0001890,4.97e-16,39;UBERON:0006240,4.97e-16,39;UBERON:0003528,6.13e-15,29;UBERON:0002791,6.13e-15,29;UBERON:0001893,6.13e-15,29;UBERON:0000956,1.52e-10,21;UBERON:0001869,1.52e-10,21;UBERON:0000203,1.52e-10,21;UBERON:0002619,1.00e-08,17;UBERON:0010314,5.44e-07,92|phase1_expression=16.4953312517938,0.697950815278722,0.909998478779072,2.72217790176147,5.00895729946347,14.2697381125106,17.2873354040689,87.4164899699471,71.80224829735,80.2841325284438,8.73211637950075,11.0085579413564,60.776259125578,64.6036773876391,9.32707333083856,10.1237633694913,3.49780939064073,36.7513422642347,40.4487579136929,39.0438479654188,26.788636397587,20.751808800985,17.7615856614476,9.27956052201759,9.86459908588831,1.72269589234506,3.4460959692726,6.24866574789078,6.08074942260396,3.78045194639896,8.42575940490158,0,0,0,20.7973166220918,17.7871070533587,30.421234083093,3.34825304589526,1.5626706890476,4.18818995179039,5.88231488031014,4.78131839470912,6.79714494243615,0,0,0,2.34717403304412,20.0583143870011,10.5449367712546,12.6379434398284,10.4989816219022,31.6255641602937,43.287912362896,118.95939128986,121.329861490429,0,1.14613375975503,0.515672092277442,47.1397353802863,82.5225927664371,62.1154775436056,1.35537812827653,1.77858959222228,0,0,0,35.3528130411718,46.8746332492297,55.0591841358016,58.3225653592904,49.2160409562234,33.421165175245,42.6276284036614,108.404357305234,102.17127210544,118.579223472693,124.430945529309,105.469741258365,128.568668335476,50.380561912934,43.6396059983494,40.6312429034273,130.936826531648,83.8516288947203,116.585063053706,34.7661730858928,28.3319644790215,39.8894814066143,5.6794644999888,4.45872204630035,9.85539261585705,0,1.3599426674155,0.539703191637817,0,0,9.26933172869562,0,0,0.35333957451034,25.3518155598025,0,0,0,5.19578498426914,5.57391704045217,5.56076889516262,7.53613606145796,12.4290184150642,5.93768556259299,1.73485326766136,1.82679286987285,2.99800146432876,2.11011696773672,3.05730638552832,2.38766523526383,0.494389935468748,1.3013942122792,10.6153266233985,0.647067399789637,7.06692859073259,5.81850303762267,16.775258509631,77.58691120806,65.5568192326114,9.19645398750929,9.4653948359677,9.59844369589452,8.25956475974921,138.106969531247,165.157717617524,122.764302014269,79.6115386480626,60.8602788446187,153.555364929515,92.1530374224863,3.86989582631202,6.22034853050465,4.0435641349388,17.8875577503503,13.6626465110839,19.5416788768452,23.2280147448901,17.1803492332715,26.1260156741099,23.060469651273,21.6450983732974,29.4921842642478,6.68260778091811,4.53854592402766,4.3987781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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:105439 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q68FF7 | |||
|association_with_transcript=0bp_to_ENSMUST00000069443,NM_198014,uc007uws.1,uc007uwt.1_5end | |||
|cluster_id=chr14:104049425..104049460,+ | |||
|description=CAGE_peak_1_at_Slain1_5end | |||
|id=chr14:104049425..104049460,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.93e-14!33;CL:0000047!4.93e-14!33;CL:0000031!4.93e-14!33;CL:0000404!4.93e-14!33;CL:0000221!7.20e-13!44;CL:0000133!7.20e-13!44;CL:0002319!1.21e-12!43;CL:0000117!3.90e-12!23;CL:0000337!3.90e-12!23;CL:0000393!4.31e-08!39;CL:0000211!4.31e-08!39;CL:0000055!4.17e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.68e-14,33;CL:0000047,4.68e-14,33;CL:0000031,4.68e-14,33;CL:0000404,4.68e-14,33;CL:0000221,6.88e-13,44;CL:0000133,6.88e-13,44;CL:0002319,1.16e-12,43;CL:0000117,3.73e-12,23;CL:0000337,3.73e-12,23;CL:0000393,3.00e-08,39;CL:0000211,3.00e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.84e-29!73;UBERON:0005743!5.84e-29!73;UBERON:0000073!1.18e-27!75;UBERON:0001016!1.18e-27!75;UBERON:0007811!9.45e-26!86;UBERON:0004121!1.92e-23!102;UBERON:0000924!1.92e-23!102;UBERON:0006601!1.92e-23!102;UBERON:0000033!3.94e-22!63;UBERON:0000153!4.62e-22!94;UBERON:0000955!5.20e-21!50;UBERON:0006238!5.20e-21!50;UBERON:0001049!6.53e-21!52;UBERON:0005068!6.53e-21!52;UBERON:0006241!6.53e-21!52;UBERON:0007135!6.53e-21!52;UBERON:0002616!1.92e-20!49;UBERON:0002346!1.92e-18!71;UBERON:0003075!1.92e-18!71;UBERON:0007284!1.92e-18!71;UBERON:0003056!4.43e-18!49;UBERON:0003080!1.08e-16!40;UBERON:0002020!1.78e-16!34;UBERON:0002780!5.27e-16!39;UBERON:0001890!5.27e-16!39;UBERON:0006240!5.27e-16!39;UBERON:0002791!6.47e-15!29;UBERON:0003528!6.47e-15!29;UBERON:0001893!6.47e-15!29;UBERON:0000064!5.67e-12!99;UBERON:0000956!1.58e-10!21;UBERON:0001869!1.58e-10!21;UBERON:0000203!1.58e-10!21;UBERON:0002619!1.03e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.23e-29,73;UBERON:0004121,3.85e-28,95;UBERON:0000924,3.85e-28,95;UBERON:0006601,3.85e-28,95;UBERON:0001016,1.06e-27,75;UBERON:0002346,9.77e-24,64;UBERON:0003075,9.77e-24,64;UBERON:0007284,9.77e-24,64;UBERON:0010371,1.19e-23,73;UBERON:0000073,2.84e-22,54;UBERON:0001049,6.04e-21,52;UBERON:0005068,6.04e-21,52;UBERON:0006241,6.04e-21,52;UBERON:0007135,6.04e-21,52;UBERON:0000955,5.31e-19,47;UBERON:0006238,5.31e-19,47;UBERON:0002616,1.91e-18,46;UBERON:0003056,4.15e-18,49;UBERON:0003080,1.01e-16,40;UBERON:0002020,1.68e-16,34;UBERON:0002780,4.97e-16,39;UBERON:0001890,4.97e-16,39;UBERON:0006240,4.97e-16,39;UBERON:0003528,6.13e-15,29;UBERON:0002791,6.13e-15,29;UBERON:0001893,6.13e-15,29;UBERON:0000956,1.52e-10,21;UBERON:0001869,1.52e-10,21;UBERON:0000203,1.52e-10,21;UBERON:0002619,1.00e-08,17;UBERON:0010314,5.44e-07,92 | |||
|phase1_expression=16.4953312517938,0.697950815278722,0.909998478779072,2.72217790176147,5.00895729946347,14.2697381125106,17.2873354040689,87.4164899699471,71.80224829735,80.2841325284438,8.73211637950075,11.0085579413564,60.776259125578,64.6036773876391,9.32707333083856,10.1237633694913,3.49780939064073,36.7513422642347,40.4487579136929,39.0438479654188,26.788636397587,20.751808800985,17.7615856614476,9.27956052201759,9.86459908588831,1.72269589234506,3.4460959692726,6.24866574789078,6.08074942260396,3.78045194639896,8.42575940490158,0,0,0,20.7973166220918,17.7871070533587,30.421234083093,3.34825304589526,1.5626706890476,4.18818995179039,5.88231488031014,4.78131839470912,6.79714494243615,0,0,0,2.34717403304412,20.0583143870011,10.5449367712546,12.6379434398284,10.4989816219022,31.6255641602937,43.287912362896,118.95939128986,121.329861490429,0,1.14613375975503,0.515672092277442,47.1397353802863,82.5225927664371,62.1154775436056,1.35537812827653,1.77858959222228,0,0,0,35.3528130411718,46.8746332492297,55.0591841358016,58.3225653592904,49.2160409562234,33.421165175245,42.6276284036614,108.404357305234,102.17127210544,118.579223472693,124.430945529309,105.469741258365,128.568668335476,50.380561912934,43.6396059983494,40.6312429034273,130.936826531648,83.8516288947203,116.585063053706,34.7661730858928,28.3319644790215,39.8894814066143,5.6794644999888,4.45872204630035,9.85539261585705,0,1.3599426674155,0.539703191637817,0,0,9.26933172869562,0,0,0.35333957451034,25.3518155598025,0,0,0,5.19578498426914,5.57391704045217,5.56076889516262,7.53613606145796,12.4290184150642,5.93768556259299,1.73485326766136,1.82679286987285,2.99800146432876,2.11011696773672,3.05730638552832,2.38766523526383,0.494389935468748,1.3013942122792,10.6153266233985,0.647067399789637,7.06692859073259,5.81850303762267,16.775258509631,77.58691120806,65.5568192326114,9.19645398750929,9.4653948359677,9.59844369589452,8.25956475974921,138.106969531247,165.157717617524,122.764302014269,79.6115386480626,60.8602788446187,153.555364929515,92.1530374224863,3.86989582631202,6.22034853050465,4.0435641349388,17.8875577503503,13.6626465110839,19.5416788768452,23.2280147448901,17.1803492332715,26.1260156741099,23.060469651273,21.6450983732974,29.4921842642478,6.68260778091811,4.53854592402766,4.39877810409872,4.16471891612392,3.61461423993277,4.52727816478817,5.14455341019859,3.58261680273288,5.61770549850588,4.63226232806487,5.96743348730745,1.24275463521301,1.17263029990548,0.36012412292203,1.65721314909647,1.37734962223183,0.771335564436891,0.232533944750408,0.804820204198858,0.700592054203017,0.987359099480883,0.32833492815819,0.405344047729279,1.02339991197733,0.439100230582101,0.134206418760372,105.775844127756,97.7593817603202,5.94753809370836,5.55346189993443,6.39864751605702,8.12828351511535,7.34544529535932,6.45387278794696,5.33707305227689,7.79925067061493,3.32170343081158,5.10566759644434,5.7807098024062,8.55512829776949,6.04388670069272,6.29173586057955,3.02593269824572,4.77939055810481,10.4317345524195,5.1411830674378,12.3978509240388,5.29493452397817,6.7883370508669,5.40045813155453,8.22074982615345,5.60918562322488,5.49495547444812,5.92306386824642,0.889357881261447,0.500535317148282,2.16214894624523,0.899448449539415,0.405720242777006,0.482354319504834,2.80088436959562,1.72617682470486,2.59416362840057,2.19649130550465,0,1.86070473834252,1.5601883655728,1.01031551178845,0.717589654087649,0,15.3345147838282,2.4633883530163,2.77040459951444,4.58311731593008,5.39787571063555,5.69521275302174,8.33152743101048,4.87834119644497,6.46304090835383,4.20782910332672,3.82691444777969,7.04612253277673,7.9435091658312,7.08780387049407,0,0,13.277635371514,10.7615331058846,181.582717276193,137.840943432431,0,0.252470927204373,32.8128548192907,33.5777320095109,49.9782282740094,20.5513166239195,18.7150886229211,21.2307398091624,25.0982635038434,28.9333299332199,24.903130010631,66.8348338157359,15.0456490320765,6.05423052468668,3.4206261464251,18.9715641418416,31.8588332015911,13.595715624679,14.8138542912728,12.2593301841334,15.0603965369194,9.83792473420568,10.3371317267288,11.6330793432802,9.62542921638748,14.8537276229834,18.9753495434998,18.5643977846736,26.8947288545492,18.546292685225,18.1102157295856,17.5756368725906,16.3153014950892,14.9829806785739,12.9993726275676,8.22055362609418,2.11204537257339,1.69465656691056,16.3191014560672,13.6855589941428,6.13564821444441,8.56443533979813,19.8158091045207,27.0832484579351,6.99554007911642,231.967052815148,21.7006018613273,3.714963623338,2.22233432843654,4.52084296811258,14.0795054552656,8.92234875505438,28.5563762389677,35.4077174378855,32.615193817844,2.86401185404534,8.85740782027179,7.31950081656655,5.18425635944646,3.97267762427491,5.45906409365444,3.77620169877498,4.05001933054146,3.40282724579238,4.66613903850454,25.474911836564,21.4203316699992,3.58839710505549,4.30192075188454,6.61134040369762,6.97463046779748,11.9958849098453,15.0217265466565,38.9311110683411,51.1713600797469,29.9564309824248,19.0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| |||
|short_description=p1@Slain1 | |||
}} |
Revision as of 22:33, 3 August 2015
Short description: | p1@Slain1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slain1_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_ENSMUST00000069443, NM_198014, uc007uws.1, uc007uwt.1_5end |
EntrezGene: | 105439 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.68e-14 | 33 |
neuronal stem cell | 4.68e-14 | 33 |
neuroblast | 4.68e-14 | 33 |
electrically signaling cell | 4.68e-14 | 33 |
ectodermal cell | 6.88e-13 | 44 |
neurectodermal cell | 6.88e-13 | 44 |
neural cell | 1.16e-12 | 43 |
CNS neuron (sensu Vertebrata) | 3.73e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.73e-12 | 23 |
electrically responsive cell | 3.00e-08 | 39 |
electrically active cell | 3.00e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.23e-29 | 73 |
ectoderm-derived structure | 3.85e-28 | 95 |
ectoderm | 3.85e-28 | 95 |
presumptive ectoderm | 3.85e-28 | 95 |
nervous system | 1.06e-27 | 75 |
neurectoderm | 9.77e-24 | 64 |
neural plate | 9.77e-24 | 64 |
presumptive neural plate | 9.77e-24 | 64 |
ecto-epithelium | 1.19e-23 | 73 |
regional part of nervous system | 2.84e-22 | 54 |
neural tube | 6.04e-21 | 52 |
neural rod | 6.04e-21 | 52 |
future spinal cord | 6.04e-21 | 52 |
neural keel | 6.04e-21 | 52 |
brain | 5.31e-19 | 47 |
future brain | 5.31e-19 | 47 |
regional part of brain | 1.91e-18 | 46 |
pre-chordal neural plate | 4.15e-18 | 49 |
anterior neural tube | 1.01e-16 | 40 |
gray matter | 1.68e-16 | 34 |
regional part of forebrain | 4.97e-16 | 39 |
forebrain | 4.97e-16 | 39 |
future forebrain | 4.97e-16 | 39 |
brain grey matter | 6.13e-15 | 29 |
regional part of telencephalon | 6.13e-15 | 29 |
telencephalon | 6.13e-15 | 29 |
cerebral cortex | 1.52e-10 | 21 |
cerebral hemisphere | 1.52e-10 | 21 |
pallium | 1.52e-10 | 21 |
regional part of cerebral cortex | 1.00e-08 | 17 |
structure with developmental contribution from neural crest | 5.44e-07 | 92 |