FFCP PHASE1:Hg19::chr9:108505287..108505289,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:108505287..108505289,+ to FFCP PHASE1:Hg19::chr9:108505287..108505289,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr9:108505287..108505289,+ | |||
|coexpression_cluster_id=C467 | |||
|description=CAGE_peak_at_chr9:108505287..108505289,+ | |||
|id=chr9:108505287..108505289,+ | |||
|ontology_enrichment_celltype=CL:0002194!8.31e-21!63;CL:0000576!8.31e-21!63;CL:0000040!8.31e-21!63;CL:0000559!8.31e-21!63;CL:0002009!1.59e-19!65;CL:0000839!3.37e-18!70;CL:0000557!3.70e-17!71;CL:0000766!4.85e-17!76;CL:0002057!1.47e-16!42;CL:0000860!1.71e-16!45;CL:0000763!9.14e-10!112;CL:0000049!9.14e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-21;39!CL:0000234;1.14e-21;39!CL:0000860;7.68e-20;33!CL:0002057;7.68e-20;33!CL:0000576;6.47e-15;48!CL:0000766;1.50e-11;69!CL:0000235;1.51e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,7.27e-30,59;CL:0000576,7.27e-30,59;CL:0000040,7.27e-30,59;CL:0000559,7.27e-30,59;CL:0002009,2.60e-28,61;CL:0000473,2.53e-27,48;CL:0000234,2.53e-27,48;CL:0000839,7.37e-25,66;CL:0000557,3.11e-24,67;CL:0000766,4.26e-24,72;CL:0000860,5.21e-21,42;CL:0002057,5.21e-21,42;CL:0000763,6.50e-12,108;CL:0000049,6.50e-12,108;CL:0000048,9.77e-11,427;CL:0002087,1.28e-10,115;CL:0000723,1.95e-10,433;CL:0000034,1.31e-09,441;CL:0002320,3.99e-09,361;CL:0000134,8.79e-09,354;CL:0002031,1.42e-08,120;CL:0000235,1.58e-08,6;CL:0000738,2.41e-08,136;CL:0000219,2.61e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.85e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!3.21e-15!115;UBERON:0002371!1.10e-14!80;UBERON:0001474!3.12e-14!86;UBERON:0002193!7.50e-14!112;UBERON:0002390!1.21e-13!102;UBERON:0003061!1.21e-13!102;UBERON:0002204!2.64e-12!167;UBERON:0004765!3.96e-12!101;UBERON:0001434!3.96e-12!101;UBERON:0000926!5.71e-10!448;UBERON:0004120!5.71e-10!448;UBERON:0006603!5.71e-10!448;UBERON:0000922!3.98e-07!612;UBERON:0000468!5.38e-07!659;UBERON:0002050!7.13e-07!605;UBERON:0005423!7.13e-07!605;UBERON:0000923!7.57e-07!604;UBERON:0005291!7.57e-07!604;UBERON:0006598!7.57e-07!604;UBERON:0002532!7.57e-07!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.20e-21,76;UBERON:0001474,1.68e-20,82;UBERON:0004765,9.27e-20,90;UBERON:0002390,1.20e-19,98;UBERON:0003061,1.20e-19,98;UBERON:0001434,6.82e-19,100;UBERON:0002405,8.30e-19,93;UBERON:0002193,1.44e-18,108;UBERON:0002204,7.49e-17,167;UBERON:0000926,5.86e-13,315;UBERON:0004120,5.86e-13,315;UBERON:0006603,5.86e-13,315;UBERON:0003081,1.42e-08,203;UBERON:0002384,1.68e-08,371;UBERON:0000923,2.99e-07,560;UBERON:0010316,2.99e-07,560;UBERON:0005291,2.99e-07,560;UBERON:0006598,2.99e-07,560;UBERON:0010317,2.99e-07,560;UBERON:0002532,2.99e-07,560;UBERON:0002050,6.25e-07,564 | |||
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|phase1_expression=3.81524596468169,1.2846031433459,2.81908808191942,0,0,0,0,0.631719873426831,1.82829939739887,0.245733936501509,0,0.655324116390517,0.527533956456907,1.60896258848061,0,2.01697543935533,2.41077811209591,0.730310090387373,1.46379839637152,0,0,0.313454721478088,0.572471974262113,0.136874425072884,0.376627918784408,0.305653622991805,0.492603536699674,0.314843125254717,0,0,0.77408061658038,0,0,0,0.0774672005803016,0.568676929949686,0,0.553995408531877,0.200544447470142,1.30206522429511,22.1676319497525,13.6035339727971,14.9393829227828,5.67053131240302,1.51150377475524,0.727752183563449,6.27558399645349,2.87817521615278,2.16794459626573,10.3569261235974,7.42866048934392,2.12834006899727,5.17118521104928,1.93645405075148,2.70852973188684,7.52969358170419,2.72906150057846,2.9214052977861,4.59125838556354,2.56743221660875,2.55734850319616,3.29851300186716,5.78444607102732,0.852449501065388,4.64334781805734,1.13477044938228,2.4912889959823,6.02996796616184,0.521482918420201,1.52032191293582,5.44859552370032,1.84138817993782,2.53169909952708,0.633765858935825,5.52771179909113,0.838634582033504,3.36985893439485,3.30389164251314,0.64290234678832,0,2.78483348078726,2.55729815270488,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,0.587237189370939,0,0,0,0.263384084775077,0.393419540227666,0,0.205601498999509,0.167186495390678,0,0,0,0.222820913770347,1.47302953737419,0,0,0,0.260118695119756,0,0,0,0.296573126324121,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,1.15076305659177,0,0.50133791063589,1.59331170856906,0,1.45990461090791,0.189069634328136,0.443458794925128,0.087834785693126,1.30979075497713,0.364295288292542,0,8.43823223502177,6.79105975467142,7.57860374957531,0,0,0,1.59009925893364,0,0.347140501607594,1.13061588384802,0.419499436209906,0.275118041940067,0.208994966536811,0.516833518338658,0.71153252537342,1.33888245105868,0,0.760272105718513,0.732186172644509,0,0,0.625098097988558,0.22452937262617,0.112611480483322,0,0,0.549605231791222,0,0,0.436094052142534,0,1.01304409331664,0.264818361626438,0.286836620748814,1.06400514659507,0,1.06748995729705,1.2333377420858,0.622422070799533,0,0.326923806226917,0,1.72852777344,1.87457145467037,0.312160076830321,1.71141546463335,1.34503812496621,0,0,0,2.04154171254893,0.368502951935304,1.44656093646072,3.56400857184616,3.21447008062124,0,0,0.505008341862199,1.00094815897571,0,0,1.22595118319608,1.20190447125277,0.680593098960126,0,1.06778694409284,1.05965950579781,0,0,0,0.744467425326359,0.168776332241266,0.0974370051611986,0,2.02509777013059,0.161646056818812,0,0.10075209822764,0,0.57978255948989,0.272746120590835,0.286804595389004,0.487894824518382,0.132529768321485,0.348581828608555,0.725627385107593,0.504641701751257,0,0,1.28648187638577,1.38134921352481,2.3218396401599,3.60939740834793,1.41968160047813,0.337169380156203,0,0.992645754591546,0.435758888184812,0,1.61797569792197,1.56977172100277,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0.491953754172454,0.514703430895577,1.09750285408626,0,0.804231779293047,0.833296006426766,1.3032332212413,1.03993478527958,0,0.695582429850461,0.352226082707465,0.577465791044295,2.77791307545966,1.33177906564219,0,0,14.7730203652438,5.85010662848094,10.1069190356335,0,0.16798212819886,0,0.0895585227028483,0,0.383382679165211,0.492663237895943,0.880484340132261,0.207328115540772,0,0.12624243342638,0.253991577168676,0.381988425558278,1.17217447210047,1.71072446022705,0,2.10240140490742,0.285826432630578,0,0,0.95339771567235,1.55126058909333,7.15312891703765,0,0.26593811658487,0,0.514414748524284,0,0.266422179016099,4.00338382242813,4.34097284313154,0,1.62868092146868,3.19852753868291,0,1.20575750823834,0,0.199945982364114,17.0273292897667,32.1444538516561,14.7583757638122,0.479249710983165,0,0,1.15825045334063,0.410952645100767,0.179060963239896,0.560425719967636,0.197030760201927,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0.837581326671744,0,2.24702107184155,8.97484377612075,0.414415513436035,1.96306386750624,1.00034104211935,0,1.66376689224646,0.535286966391485,1.57702415033935,0.819989904948992,0.902838299183157,0,4.1389228517002,0.664225598535437,0.368738337083406,1.47702144595741,0.195801157462741,0,0.206768026122887,1.50999940573032,0.640365346820666,3.33440328590885,3.32870879020994,0.604780586659361,2.72918588600655,0.306923946576125,0.561320188866147,4.10045277618243,3.58195074346692,2.2519548960105,0,0,1.06537035187876,0.492762936082855,2.07701771673448,0.116210378459959,0.966875596732978,0.40101294060657,0.460404944679482,2.29628896329214,2.00300284807389,3.8026080338233,0.451199612907412,0.616122696835318,0,0,0.633309773357254,0,0.170093705276516,0,0,0.270946437543853,3.01013864312912,0.254876273045038,0,0.671624264166535,0,0.522870902049801,1.02580050046556,0.656029291399411,0.325378394664303,2.16386124460217,0.366277859273374,0.247528499761764,0.574265537996172,0,0,0.48335359146061,0.154048617114644,0,0,2.79292636657511,1.3051502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| ||
|short_description=p@chr9:108505287..108505289,+ | |||
}} | }} |
Latest revision as of 21:27, 31 July 2015
Short description: | p@chr9:108505287..108505289, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:108505287..108505289, + |
Coexpression cluster: | C467_CD14_Monocytederived_Mesenchymal_Macrophage_Dendritic_mucinous_liver |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 7.27e-30 | 59 |
monocyte | 7.27e-30 | 59 |
monoblast | 7.27e-30 | 59 |
promonocyte | 7.27e-30 | 59 |
macrophage dendritic cell progenitor | 2.60e-28 | 61 |
defensive cell | 2.53e-27 | 48 |
phagocyte | 2.53e-27 | 48 |
myeloid lineage restricted progenitor cell | 7.37e-25 | 66 |
granulocyte monocyte progenitor cell | 3.11e-24 | 67 |
myeloid leukocyte | 4.26e-24 | 72 |
classical monocyte | 5.21e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.21e-21 | 42 |
myeloid cell | 6.50e-12 | 108 |
common myeloid progenitor | 6.50e-12 | 108 |
multi fate stem cell | 9.77e-11 | 427 |
nongranular leukocyte | 1.28e-10 | 115 |
somatic stem cell | 1.95e-10 | 433 |
stem cell | 1.31e-09 | 441 |
connective tissue cell | 3.99e-09 | 361 |
mesenchymal cell | 8.79e-09 | 354 |
hematopoietic lineage restricted progenitor cell | 1.42e-08 | 120 |
macrophage | 1.58e-08 | 6 |
leukocyte | 2.41e-08 | 136 |
motile cell | 2.61e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.20e-21 | 76 |
bone element | 1.68e-20 | 82 |
skeletal element | 9.27e-20 | 90 |
hematopoietic system | 1.20e-19 | 98 |
blood island | 1.20e-19 | 98 |
skeletal system | 6.82e-19 | 100 |
immune system | 8.30e-19 | 93 |
hemolymphoid system | 1.44e-18 | 108 |
musculoskeletal system | 7.49e-17 | 167 |
mesoderm | 5.86e-13 | 315 |
mesoderm-derived structure | 5.86e-13 | 315 |
presumptive mesoderm | 5.86e-13 | 315 |
lateral plate mesoderm | 1.42e-08 | 203 |
connective tissue | 1.68e-08 | 371 |
germ layer | 2.99e-07 | 560 |
germ layer / neural crest | 2.99e-07 | 560 |
embryonic tissue | 2.99e-07 | 560 |
presumptive structure | 2.99e-07 | 560 |
germ layer / neural crest derived structure | 2.99e-07 | 560 |
epiblast (generic) | 2.99e-07 | 560 |
embryonic structure | 6.25e-07 | 564 |