FFCP PHASE1:Hg19::chr9:100864462..100864485,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:100864462..100864485,+ to FFCP PHASE1:Hg19::chr9:100864462..100864485,+: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr9:100864462..100864485,+ | |||
|coexpression_cluster_id=C4032 | |||
|description=CAGE_peak_at_chr9:100864462..100864485,+ | |||
|id=chr9:100864462..100864485,+ | |||
|ontology_enrichment_celltype=CL:0000542!9.85e-28!53;CL:0000051!9.85e-28!53;CL:0000838!5.94e-26!52;CL:0000791!4.39e-19!18;CL:0000789!4.39e-19!18;CL:0002420!4.39e-19!18;CL:0002419!4.39e-19!18;CL:0000790!4.39e-19!18;CL:0000084!3.49e-18!25;CL:0000827!3.49e-18!25;CL:0000738!3.57e-18!140;CL:0002087!1.19e-15!119;CL:0000037!3.08e-14!172;CL:0000566!3.08e-14!172;CL:0000988!5.58e-13!182;CL:0000623!5.98e-11!3;CL:0000825!5.98e-11!3;CL:0000784!2.73e-10!3;CL:0002031!2.93e-10!124;CL:0000842!4.11e-10!3;CL:0000625!1.45e-09!11;CL:0000624!2.38e-09!6;CL:0002032!3.10e-09!165;CL:0000837!3.10e-09!165;CL:0000224!1.11e-07!4;CL:0000893!4.06e-07!2;CL:0002489!4.06e-07!2;CL:0000809!4.06e-07!2;CL:0000808!4.06e-07!2;CL:0000894!4.06e-07!2;CL:0000806!4.06e-07!2;CL:0000807!4.06e-07!2;CL:0000805!4.06e-07!2;CL:0002425!4.06e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.00e-22;6!CL:0000623;1.81e-12;3!CL:0000898;2.77e-12;3!CL:0000791;2.08e-11;18!CL:0000789;2.08e-11;18!CL:0002419;2.08e-11;18!CL:0000542;5.28e-10;53!CL:0000895;1.55e-09;1!CL:0000084;3.62e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.57e-22,6;CL:0000838,1.89e-14,52;CL:0000542,3.80e-14,53;CL:0000051,3.80e-14,53;CL:0000623,2.03e-12,3;CL:0000825,2.03e-12,3;CL:0000898,3.01e-12,3;CL:0000791,1.99e-11,18;CL:0000789,1.99e-11,18;CL:0002420,1.99e-11,18;CL:0002419,1.99e-11,18;CL:0000790,1.99e-11,18;CL:0000810,1.76e-09,1;CL:0000895,1.76e-09,1;CL:0002436,1.76e-09,1;CL:0002427,1.76e-09,1;CL:0002428,1.76e-09,1;CL:0002429,1.76e-09,1;CL:0002433,1.76e-09,1;CL:0002431,1.76e-09,1;CL:0002432,1.76e-09,1;CL:0000084,3.51e-08,25;CL:0000827,3.51e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.08e-11;18!CL:0000051;5.28e-10;53!CL:0002427;1.55e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!7.40e-13!4;UBERON:0005058!7.40e-13!4;UBERON:0009113!7.40e-13!4;UBERON:0003295!7.40e-13!4;UBERON:0005562!7.40e-13!4;UBERON:0004177!6.85e-11!7;UBERON:0003351!1.39e-08!6;UBERON:0001042!1.81e-07!10;UBERON:0009145!1.81e-07!10;UBERON:0000178!4.56e-07!15;UBERON:0000179!4.56e-07!15;UBERON:0000463!4.56e-07!15;UBERON:0006562!9.28e-07!11 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.06e-09,4;UBERON:0005058,4.06e-09,4;UBERON:0009113,4.06e-09,4;UBERON:0003295,4.06e-09,4;UBERON:0005562,4.06e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0,0.383829398097213,0.309632246632152,0,0,0,0.154934401160603,0.142169232487422,0,0,0,0,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1384259382189,1.17447437874188,2.6759125968766,0,0.560508562981536,0,1.37696839079683,0,1.02800749499755,1.33749196312542,0,0.946895611469467,0,2.1167986808183,7.07054177939609,5.09527957542329,2.70803863765016,2.68991771423918,3.90178042679635,0.822189523018381,0.552700035571697,0.579606171470105,1.03800594213442,1.60524496853828,0,1.13309342697566,1.14966148080576,1.37450978193052,1.51811815211702,0,0,0,0.301150238155546,0.511946444617674,0,0,0.821127996921047,1.81446068902259,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.953962497221368,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,2.1673383622212,3.23441362289276,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.862856803274467,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0,0,0,0,0,0,0,0.185803175125719,0,0.284567373393656,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387533459016037,1.30356900021302,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0,0.383829398097213,0.309632246632152,0,0,0,0.154934401160603,0.142169232487422,0,0,0,0,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1384259382189,1.17447437874188,2.6759125968766,0,0.560508562981536,0,1.37696839079683,0,1.02800749499755,1.33749196312542,0,0.946895611469467,0,2.1167986808183,7.07054177939609,5.09527957542329,2.70803863765016,2.68991771423918,3.90178042679635,0.822189523018381,0.552700035571697,0.579606171470105,1.03800594213442,1.60524496853828,0,1.13309342697566,1.14966148080576,1.37450978193052,1.51811815211702,0,0,0,0.301150238155546,0.511946444617674,0,0,0.821127996921047,1.81446068902259,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.953962497221368,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,2.1673383622212,3.23441362289276,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.862856803274467,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0,0,0,0,0,0,0,0.185803175125719,0,0.284567373393656,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387533459016037,1.30356900021302,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr9:100864462..100864485,+ | |||
}} | }} |
Latest revision as of 21:02, 31 July 2015
Short description: | p@chr9:100864462..100864485, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:100864462..100864485, + |
Coexpression cluster: | C4032_CD4_Dendritic_Natural_CD8_CD19_blood_thymus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.57e-22 | 6 |
lymphoid lineage restricted progenitor cell | 1.89e-14 | 52 |
lymphocyte | 3.80e-14 | 53 |
common lymphoid progenitor | 3.80e-14 | 53 |
natural killer cell | 2.03e-12 | 3 |
pro-NK cell | 2.03e-12 | 3 |
naive T cell | 3.01e-12 | 3 |
mature alpha-beta T cell | 1.99e-11 | 18 |
alpha-beta T cell | 1.99e-11 | 18 |
immature T cell | 1.99e-11 | 18 |
mature T cell | 1.99e-11 | 18 |
immature alpha-beta T cell | 1.99e-11 | 18 |
CD4-positive, alpha-beta thymocyte | 1.76e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.76e-09 | 1 |
mature CD4 single-positive thymocyte | 1.76e-09 | 1 |
resting double-positive thymocyte | 1.76e-09 | 1 |
double-positive blast | 1.76e-09 | 1 |
CD69-positive double-positive thymocyte | 1.76e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.76e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.76e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.76e-09 | 1 |
T cell | 3.51e-08 | 25 |
pro-T cell | 3.51e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.06e-09 | 4 |
hemolymphoid system gland | 4.06e-09 | 4 |
thymic region | 4.06e-09 | 4 |
pharyngeal gland | 4.06e-09 | 4 |
thymus primordium | 4.06e-09 | 4 |