FFCP PHASE1:Hg19::chr7:93516698..93516745,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:93516698..93516745,- | |||
|coexpression_cluster_id=C378 | |||
|description=CAGE_peak_at_chr7:93516698..93516745,- | |||
|id=chr7:93516698..93516745,- | |||
|ontology_enrichment_celltype=CL:0000680!2.81e-25!57;CL:0000056!2.81e-25!57;CL:0000355!2.81e-25!57;CL:0000187!5.23e-24!54;CL:0000192!1.16e-23!42;CL:0000514!1.16e-23!42;CL:0000183!1.09e-22!59;CL:0000359!1.54e-21!32;CL:0000393!2.90e-21!60;CL:0000211!2.90e-21!60;CL:0000222!5.65e-21!119;CL:0000055!8.50e-21!180;CL:0000220!1.24e-11!246;CL:0002321!2.55e-11!248;CL:0000144!5.05e-10!625;CL:0000548!7.91e-10!679;CL:0000004!7.91e-10!679;CL:0000255!7.91e-10!679;CL:0000012!1.59e-09!682;CL:0002371!8.94e-09!591;CL:0000723!4.76e-08!436;CL:0000034!8.28e-08!444;CL:0002539!9.74e-08!10;CL:0002494!1.27e-07!16;CL:0000048!2.67e-07!430;CL:0002595!6.65e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.49e-39;32!CL:0000192;1.99e-28;43!CL:0000187;2.95e-16;55!CL:0000393;1.35e-13;61!CL:0000211;1.35e-13;61!CL:0002595;9.67e-13;5!CL:0002539;4.23e-12;10!CL:0002494;5.80e-10;16!CL:0002594;2.49e-09;4!CL:0000134;2.28e-08;55!CL:0000048;1.87e-07;58!CL:0002592;1.89e-07;3!CL:0000723;3.20e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.34e-40,32;CL:0000192,1.45e-38,43;CL:0000514,1.45e-38,43;CL:0000187,2.55e-32,55;CL:0000680,3.82e-30,58;CL:0000056,3.82e-30,58;CL:0000355,3.82e-30,58;CL:0000393,4.17e-30,61;CL:0000211,4.17e-30,61;CL:0000222,3.21e-15,121;CL:0002595,1.08e-12,5;CL:0002539,3.29e-12,10;CL:0000723,9.04e-11,433;CL:0000048,1.26e-10,427;CL:0000034,3.05e-10,441;CL:0002494,5.57e-10,16;CL:0002594,3.10e-09,4;CL:0002592,2.31e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;1.99e-28;43!CL:0000355;2.49e-14;58!UBERON:0005795;1.09e-07;10 | |||
|ontology_enrichment_disease=DOID:2394!5.67e-14!14;DOID:120!4.22e-10!27;DOID:193!6.00e-09!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.48e-21;14!DOID:120;6.17e-15;27!DOID:193;1.25e-13;29!DOID:0060072;3.29e-10;4!DOID:0060084;3.41e-08;3!DOID:127;3.41e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.71e-21,14;DOID:120,4.08e-15,27;DOID:193,8.57e-14,29;DOID:0060072,3.30e-10,4;DOID:0060084,3.42e-08,3;DOID:127,3.42e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0001134!9.91e-24!61;UBERON:0002036!9.91e-24!61;UBERON:0003082!9.91e-24!61;UBERON:0002385!2.06e-22!63;UBERON:0001015!2.06e-22!63;UBERON:0000383!2.06e-22!63;UBERON:0004290!5.43e-22!70;UBERON:0000914!2.44e-20!83;UBERON:0002329!2.44e-20!83;UBERON:0003077!2.44e-20!83;UBERON:0003059!2.44e-20!83;UBERON:0007282!2.44e-20!83;UBERON:0009618!2.44e-20!83;UBERON:0007285!2.44e-20!83;UBERON:0001637!9.02e-20!42;UBERON:0003509!9.02e-20!42;UBERON:0004572!9.02e-20!42;UBERON:0000486!9.94e-20!82;UBERON:0004872!8.67e-18!84;UBERON:0001981!1.71e-16!60;UBERON:0007500!1.71e-16!60;UBERON:0004537!1.71e-16!60;UBERON:0006965!1.71e-16!60;UBERON:0000490!1.80e-16!138;UBERON:0000055!4.51e-16!69;UBERON:0005256!8.36e-16!143;UBERON:0004573!9.88e-16!33;UBERON:0004571!9.88e-16!33;UBERON:0002049!1.52e-15!79;UBERON:0007798!1.52e-15!79;UBERON:0003914!7.76e-14!118;UBERON:0004535!3.50e-13!110;UBERON:0001009!2.34e-12!113;UBERON:0002100!1.17e-11!216;UBERON:0000483!2.28e-08!309;UBERON:0000119!2.39e-08!312;UBERON:0001135!3.89e-08!15;UBERON:0004237!9.74e-08!10;UBERON:0004695!9.74e-08!10;UBERON:0002111!9.74e-08!10;UBERON:0004178!9.74e-08!10;UBERON:0000992!1.50e-07!13;UBERON:0003104!1.67e-07!238;UBERON:0009142!1.67e-07!238;UBERON:0000947!3.49e-07!21;UBERON:0010191!3.49e-07!21;UBERON:0003513!4.57e-07!8;UBERON:0003834!6.65e-07!5;UBERON:0001533!6.65e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.79e-21;33!UBERON:0004571;5.79e-21;33!UBERON:0001637;2.95e-20;42!UBERON:0003509;2.95e-20;42!UBERON:0004572;2.95e-20;42!UBERON:0000992;8.11e-13;13!UBERON:0003834;9.67e-13;5!UBERON:0001533;9.67e-13;5!UBERON:0004237;4.23e-12;10!UBERON:0004695;4.23e-12;10!UBERON:0002111;4.23e-12;10!UBERON:0004178;4.23e-12;10!UBERON:0001135;5.89e-12;15!UBERON:0007500;9.11e-12;56!UBERON:0001981;9.11e-12;56!UBERON:0004537;9.11e-12;56!UBERON:0002118;5.83e-11;5!UBERON:0003134;1.10e-10;33!UBERON:0002119;3.48e-10;4!UBERON:0001310;2.49e-09;4!UBERON:0000474;4.13e-09;37!UBERON:0000055;5.39e-09;65!UBERON:0000991;5.83e-09;21!UBERON:0003513;6.32e-09;7!UBERON:0002049;1.45e-08;75!UBERON:0007798;1.45e-08;75!UBERON:0003100;2.47e-08;41!UBERON:0003914;5.11e-08;74!UBERON:0000947;9.54e-08;21!UBERON:0010191;9.54e-08;21!UBERON:0003498;1.89e-07;3!UBERON:0005985;1.89e-07;3!UBERON:0001621;1.89e-07;3!UBERON:0000948;9.89e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,6.08e-31,42;UBERON:0003509,6.08e-31,42;UBERON:0004572,6.08e-31,42;UBERON:0001134,1.42e-27,62;UBERON:0002036,1.42e-27,62;UBERON:0003082,1.42e-27,62;UBERON:0002329,2.01e-26,71;UBERON:0003059,2.01e-26,71;UBERON:0007282,2.01e-26,71;UBERON:0004290,2.01e-26,71;UBERON:0009618,2.01e-26,71;UBERON:0002385,2.05e-26,64;UBERON:0001015,2.05e-26,64;UBERON:0000383,2.05e-26,64;UBERON:0003077,6.48e-26,72;UBERON:0007285,6.48e-26,72;UBERON:0007524,2.02e-25,73;UBERON:0007503,1.06e-24,78;UBERON:0004872,1.24e-24,83;UBERON:0004573,4.99e-24,33;UBERON:0004571,4.99e-24,33;UBERON:0007500,2.36e-21,59;UBERON:0001981,2.36e-21,59;UBERON:0004537,2.36e-21,59;UBERON:0006965,2.36e-21,59;UBERON:0000486,3.71e-21,83;UBERON:0000055,6.86e-19,68;UBERON:0002049,5.01e-18,78;UBERON:0007798,5.01e-18,78;UBERON:0004535,4.00e-17,109;UBERON:0001009,2.17e-16,112;UBERON:0005256,2.50e-16,122;UBERON:0003914,2.63e-16,117;UBERON:0000926,1.97e-15,315;UBERON:0004120,1.97e-15,315;UBERON:0006603,1.97e-15,315;UBERON:0000490,4.07e-15,148;UBERON:0000992,6.15e-13,13;UBERON:0003834,1.08e-12,5;UBERON:0001533,1.08e-12,5;UBERON:0003104,1.67e-12,160;UBERON:0009142,1.67e-12,160;UBERON:0004237,3.29e-12,10;UBERON:0004695,3.29e-12,10;UBERON:0002111,3.29e-12,10;UBERON:0004178,3.29e-12,10;UBERON:0001135,4.14e-12,15;UBERON:0003134,6.92e-12,37;UBERON:0000474,6.92e-12,37;UBERON:0002118,4.08e-11,5;UBERON:0003498,6.12e-11,5;UBERON:0005985,6.12e-11,5;UBERON:0003100,2.59e-10,41;UBERON:0002119,3.30e-10,4;UBERON:0002100,1.02e-09,199;UBERON:0003133,1.80e-09,48;UBERON:0001310,3.10e-09,4;UBERON:0000991,4.78e-09,21;UBERON:0009196,4.78e-09,21;UBERON:0009117,4.78e-09,21;UBERON:0005564,4.78e-09,21;UBERON:0000948,5.03e-09,24;UBERON:0005498,5.03e-09,24;UBERON:0004140,5.03e-09,24;UBERON:0009881,5.03e-09,24;UBERON:0004141,5.03e-09,24;UBERON:0003084,5.03e-09,24;UBERON:0007005,5.03e-09,24;UBERON:0004139,5.03e-09,24;UBERON:0004291,5.03e-09,24;UBERON:0005156,5.78e-09,59;UBERON:0000990,5.78e-09,59;UBERON:0003513,6.81e-09,7;UBERON:0004176,1.56e-08,22;UBERON:0000947,8.56e-08,21;UBERON:0010191,8.56e-08,21;UBERON:0007100,9.60e-08,27;UBERON:0003081,1.25e-07,203;UBERON:0001621,2.31e-07,3 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,1.0007329835313,0,0.872338524100369,0,0,0,1.22866968250754,1.39560233594486,0,0,0.247532705920093,0.994192127183747,0,2.41077811209591,0.730310090387373,1.95173119516203,0,0,0,0,0,0.251085279189606,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,0.255725123687061,0.361439152384566,0,0,2.3858578411533,2.43317435151318,0,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0.838998872419812,0,0,0,0,0,0,1.52054421143703,0,1.10298924103761,0,0.446498641420399,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0.496971951695318,0.379891534993739,0.132409180813219,1.72101972449288,0.354668382198357,0,0,0.74000264525148,0.622422070799533,3.77189881795127,7.19232373699218,0,0,0,2.49728061464256,0,3.58676833324323,0,0,0.280901613404497,0.408308342509787,0.122834317311768,0,0,0.741800787835671,0.910161361938026,1.43723628363248,0,0,0,0,0,2.85452311922534,1.47461838108027,0.179389635688862,0,0,0.600182192168805,0,0,0,0.168776332241266,0.0974370051611986,0.757301322732344,0.0920498986422993,0,0.355009592516614,0.10075209822764,0.169560592310488,0.386521706326594,0,0.860413786167011,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0.343135620597051,0.329250856225877,1.1240175325762,0.904760751704678,0.185176890317059,0,0,0,0,0.587043471179108,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0,0.141775097242386,0.626909658919938,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.22001485746285,2.06834745212444,0,3.381211010224,0.531876233169741,1.04007436911366,0,1.41849132023278,0.532844358032199,1.14382394926518,0,0,0.977208552881205,0.710783897485092,3.95975936466715,0.602878754119172,0,0.499864955910285,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0.280660094433074,0,1.02341449813341,0.160853921143607,0,0.462629081407967,1.24293207719189,0.164254312027618,13.5006151587741,0.813472649219715,0,0.200506470303285,0,0.229628896329213,1.82091168006717,0.524497659837696,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.863663664408557,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0.325378394664303,3.50339439602256,0,0,0,0,4.82051789532479,0.096670718292122,0.308097234229289,0.15350367472613,0.275673144969061,0.107420244868274,0,1.02271952899321,0,0.661139661443912,0,0.382838137483752,0.2023155617111,1.39453664789186,1.25924938732256,3.485186350803,2.46426864140871,4.7907542728532,2.60979897622522,10.1928320507156,1.86062352764589,0,1.2655176988749,2.2875623270859,0.511795582622668,0,0,8.63443504219153,0.539617372749944,1.92175920815238,4.71249609382746,1.2130948894399,4.75530963519025,18.1141136182762,0,26.0773433905474,23.2430322864862,0.136499911407986,4.94919011837995,4.52032466480971,4.41092274836899,18.5762913067542,17.0995845248967,0,0,2.02910376962704,4.3375289733965,7.60578126837052,0.286822704408103,0,2.49669736036875,4.96665489698837,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,3.10674542563371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.849523652246594,0,0,0,0,0,0,0,3.22795244566427,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,17.7923760893471,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0,0,0,0,1.21491816834592,0,0,0.17472666824203,0.171986032471617,0,0,0,0.0969890164884194,0,0.451961481561065,0,4.76915068087175,0,0,0.320635281006135,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,3.60299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,3.22717210799121,0,0,0,0,7.60199442455198,12.0991008768177,17.3091300857987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0.151649117541648,0,0,0,0,1.19403842309499,0.233713309847224,2.77402930751307,0.757612021100357,0,0.889811221596536,2.51724075236616,0,6.372925223894,15.6726458989012,14.1774122775695,3.59842489730884,8.69472558507053,21.1500165998836,5.84851772027589,3.1304703708704,1.95334891696384,0.380805212168795,4.88244879845594,2.18218391043071,5.47793840916691,3.71227007902795,1.99047944349308,0,0,0.336749488765919,0,0.192619830407303,0,0,0,0,1.46842022703881,0.179088841081487,0,1.09642024789354,0.353378291891762,0,0.168942440653073,0,0.345430341731199,0.607719912354764,0,0,0,0,0,1.2288645437686,0,0,0,0,0,2.39337735327393,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0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| |||
|short_description=p@chr7:93516698..93516745,- | |||
}} |
Latest revision as of 12:36, 31 July 2015
Short description: | p@chr7:93516698..93516745, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:93516698..93516745, - |
Coexpression cluster: | C378_Smooth_mesenchymal_placenta_clear_leiomyoma_renal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.34e-40 | 32 |
smooth muscle cell | 1.45e-38 | 43 |
smooth muscle myoblast | 1.45e-38 | 43 |
muscle cell | 2.55e-32 | 55 |
muscle precursor cell | 3.82e-30 | 58 |
myoblast | 3.82e-30 | 58 |
multi-potent skeletal muscle stem cell | 3.82e-30 | 58 |
electrically responsive cell | 4.17e-30 | 61 |
electrically active cell | 4.17e-30 | 61 |
mesodermal cell | 3.21e-15 | 121 |
smooth muscle cell of the subclavian artery | 1.08e-12 | 5 |
aortic smooth muscle cell | 3.29e-12 | 10 |
somatic stem cell | 9.04e-11 | 433 |
multi fate stem cell | 1.26e-10 | 427 |
stem cell | 3.05e-10 | 441 |
cardiocyte | 5.57e-10 | 16 |
smooth muscle cell of the umbilical artery | 3.10e-09 | 4 |
smooth muscle cell of the coronary artery | 2.31e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.71e-21 | 14 |
female reproductive organ cancer | 4.08e-15 | 27 |
reproductive organ cancer | 8.57e-14 | 29 |