FFCP PHASE1:Hg19::chr7:93516672..93516693,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:93516672..93516693,+ to FFCP PHASE1:Hg19::chr7:93516672..93516693,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr7:93516672..93516693,+ | |||
|coexpression_cluster_id=C378 | |||
|description=CAGE_peak_at_chr7:93516672..93516693,+ | |||
|id=chr7:93516672..93516693,+ | |||
|ontology_enrichment_celltype=CL:0000680!1.20e-27!57;CL:0000056!1.20e-27!57;CL:0000355!1.20e-27!57;CL:0000192!2.70e-27!42;CL:0000514!2.70e-27!42;CL:0000187!4.56e-27!54;CL:0000359!1.49e-25!32;CL:0000393!1.77e-25!60;CL:0000211!1.77e-25!60;CL:0000183!1.43e-23!59;CL:0000055!8.71e-22!180;CL:0000222!9.55e-17!119;CL:0002494!2.50e-11!16;CL:0002539!6.95e-09!10;CL:0000048!8.34e-09!430;CL:0000723!2.69e-08!436;CL:0002595!6.75e-08!5;CL:0000034!1.19e-07!444;CL:0000220!3.28e-07!246;CL:0000548!3.55e-07!679;CL:0000004!3.55e-07!679;CL:0000255!3.55e-07!679;CL:0002321!5.13e-07!248;CL:0000057!5.23e-07!75;CL:0000144!5.28e-07!625;CL:0000012!5.78e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.34e-23;32!CL:0000192;3.87e-20;43!CL:0002595;8.54e-17;5!CL:0002494;1.23e-14;16!CL:0000187;9.46e-12;55!CL:0000393;1.15e-08;61!CL:0000211;1.15e-08;61!CL:0000569;3.63e-08;4!CL:0002593;5.03e-08;2!CL:0002594;1.89e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,2.89e-26,43;CL:0000514,2.89e-26,43;CL:0000359,5.56e-24,32;CL:0000187,1.62e-21,55;CL:0000680,4.18e-20,58;CL:0000056,4.18e-20,58;CL:0000355,4.18e-20,58;CL:0000393,7.81e-19,61;CL:0000211,7.81e-19,61;CL:0002595,1.26e-16,5;CL:0002494,1.28e-14,16;CL:0000222,1.48e-09,121;CL:0000048,3.41e-08,427;CL:0000569,4.35e-08,4;CL:0000011,4.35e-08,4;CL:0002593,4.95e-08,2;CL:0000723,6.46e-08,433;CL:0000034,1.47e-07,441;CL:0002594,1.79e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;3.87e-20;43!CL:0000355;8.41e-10;58!CL:0000011;3.63e-08;4 | |||
|ontology_enrichment_disease=DOID:2394!1.36e-10!14;DOID:120!5.33e-10!27;DOID:193!5.94e-09!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.44e-17;14!DOID:0060084;7.40e-11;3!DOID:127;7.40e-11;3!DOID:120;4.63e-10;27!DOID:193;3.18e-09;29!DOID:0060072;3.14e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.81e-17,14;DOID:0060084,8.05e-11,3;DOID:127,8.05e-11,3;DOID:120,4.09e-10,27;DOID:193,2.84e-09,29;DOID:0060072,3.34e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001134!7.31e-25!61;UBERON:0002036!7.31e-25!61;UBERON:0003082!7.31e-25!61;UBERON:0004872!5.91e-24!84;UBERON:0004290!6.74e-24!70;UBERON:0002385!1.31e-23!63;UBERON:0001015!1.31e-23!63;UBERON:0000383!1.31e-23!63;UBERON:0001637!4.41e-23!42;UBERON:0003509!4.41e-23!42;UBERON:0004572!4.41e-23!42;UBERON:0000914!6.07e-21!83;UBERON:0002329!6.07e-21!83;UBERON:0003077!6.07e-21!83;UBERON:0003059!6.07e-21!83;UBERON:0007282!6.07e-21!83;UBERON:0009618!6.07e-21!83;UBERON:0007285!6.07e-21!83;UBERON:0000486!3.92e-20!82;UBERON:0001981!6.87e-20!60;UBERON:0007500!6.87e-20!60;UBERON:0004537!6.87e-20!60;UBERON:0006965!6.87e-20!60;UBERON:0000490!2.08e-19!138;UBERON:0004573!4.42e-18!33;UBERON:0004571!4.42e-18!33;UBERON:0000055!1.09e-17!69;UBERON:0002049!7.00e-17!79;UBERON:0007798!7.00e-17!79;UBERON:0004535!1.18e-16!110;UBERON:0003914!4.13e-16!118;UBERON:0001009!8.89e-16!113;UBERON:0005256!2.34e-14!143;UBERON:0001135!7.49e-10!15;UBERON:0000119!5.76e-09!312;UBERON:0004237!6.95e-09!10;UBERON:0004695!6.95e-09!10;UBERON:0002111!6.95e-09!10;UBERON:0004178!6.95e-09!10;UBERON:0003513!1.31e-08!8;UBERON:0000483!1.68e-08!309;UBERON:0002100!2.09e-08!216;UBERON:0003834!6.75e-08!5;UBERON:0001533!6.75e-08!5;UBERON:0003100!6.98e-08!41;UBERON:0000992!1.25e-07!13;UBERON:0000948!1.41e-07!24;UBERON:0005498!1.41e-07!24;UBERON:0004140!1.41e-07!24;UBERON:0009881!1.41e-07!24;UBERON:0004141!1.41e-07!24;UBERON:0003084!1.41e-07!24;UBERON:0007005!1.41e-07!24;UBERON:0004139!1.41e-07!24;UBERON:0004291!1.41e-07!24;UBERON:0003134!3.01e-07!37;UBERON:0000474!3.01e-07!37;UBERON:0003104!3.13e-07!238;UBERON:0009142!3.13e-07!238;UBERON:0000947!7.13e-07!21;UBERON:0010191!7.13e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;8.54e-17;5!UBERON:0001533;8.54e-17;5!UBERON:0003513;1.18e-16;7!UBERON:0001637;4.06e-15;42!UBERON:0003509;4.06e-15;42!UBERON:0004572;4.06e-15;42!UBERON:0004573;6.78e-14;33!UBERON:0004571;6.78e-14;33!UBERON:0000992;1.37e-11;13!UBERON:0002118;1.52e-10;5!UBERON:0000948;3.68e-10;22!UBERON:0003134;7.93e-09;33!UBERON:0000991;8.05e-09;21!UBERON:0007100;9.84e-09;25!UBERON:0002119;2.19e-08;4!UBERON:0003100;4.97e-08;41!UBERON:0002456;5.03e-08;2!UBERON:0007500;1.28e-07;56!UBERON:0001981;1.28e-07;56!UBERON:0004537;1.28e-07;56!UBERON:0000474;1.67e-07;37!UBERON:0001310;1.89e-07;4!UBERON:0005406;3.13e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.38e-22,83;UBERON:0001637,1.97e-19,42;UBERON:0003509,1.97e-19,42;UBERON:0004572,1.97e-19,42;UBERON:0002329,9.88e-19,71;UBERON:0003059,9.88e-19,71;UBERON:0007282,9.88e-19,71;UBERON:0004290,9.88e-19,71;UBERON:0009618,9.88e-19,71;UBERON:0001134,1.94e-18,62;UBERON:0002036,1.94e-18,62;UBERON:0003082,1.94e-18,62;UBERON:0003077,2.19e-18,72;UBERON:0007285,2.19e-18,72;UBERON:0007524,4.77e-18,73;UBERON:0002385,1.10e-17,64;UBERON:0001015,1.10e-17,64;UBERON:0000383,1.10e-17,64;UBERON:0003834,1.26e-16,5;UBERON:0001533,1.26e-16,5;UBERON:0003513,1.52e-16,7;UBERON:0007503,1.71e-16,78;UBERON:0004573,3.21e-15,33;UBERON:0004571,3.21e-15,33;UBERON:0000486,3.93e-15,83;UBERON:0003914,9.11e-15,117;UBERON:0007500,3.52e-14,59;UBERON:0001981,3.52e-14,59;UBERON:0004537,3.52e-14,59;UBERON:0006965,3.52e-14,59;UBERON:0004535,7.85e-14,109;UBERON:0005256,1.07e-13,122;UBERON:0001009,2.80e-13,112;UBERON:0000490,5.05e-13,148;UBERON:0000055,1.11e-11,68;UBERON:0000992,1.36e-11,13;UBERON:0000948,2.37e-11,24;UBERON:0005498,2.37e-11,24;UBERON:0004140,2.37e-11,24;UBERON:0009881,2.37e-11,24;UBERON:0004141,2.37e-11,24;UBERON:0003084,2.37e-11,24;UBERON:0007005,2.37e-11,24;UBERON:0004139,2.37e-11,24;UBERON:0004291,2.37e-11,24;UBERON:0002049,8.00e-11,78;UBERON:0007798,8.00e-11,78;UBERON:0000926,1.02e-10,315;UBERON:0004120,1.02e-10,315;UBERON:0006603,1.02e-10,315;UBERON:0003104,1.31e-10,160;UBERON:0009142,1.31e-10,160;UBERON:0002118,1.56e-10,5;UBERON:0003100,2.23e-10,41;UBERON:0003134,4.72e-10,37;UBERON:0000474,4.72e-10,37;UBERON:0007100,7.35e-10,27;UBERON:0000991,7.80e-09,21;UBERON:0009196,7.80e-09,21;UBERON:0009117,7.80e-09,21;UBERON:0005564,7.80e-09,21;UBERON:0003133,1.49e-08,48;UBERON:0002119,2.12e-08,4;UBERON:0004176,2.29e-08,22;UBERON:0002456,4.95e-08,2;UBERON:0002100,9.39e-08,199;UBERON:0005156,1.52e-07,59;UBERON:0000990,1.52e-07,59;UBERON:0001310,1.79e-07,4;UBERON:0005406,2.44e-07,2;UBERON:0000025,6.52e-07,192 | |||
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| ||
|short_description=p@chr7:93516672..93516693,+ | |||
}} | }} |
Latest revision as of 12:36, 31 July 2015
Short description: | p@chr7:93516672..93516693, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:93516672..93516693, + |
Coexpression cluster: | C378_Smooth_mesenchymal_placenta_clear_leiomyoma_renal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.89e-26 | 43 |
smooth muscle myoblast | 2.89e-26 | 43 |
vascular associated smooth muscle cell | 5.56e-24 | 32 |
muscle cell | 1.62e-21 | 55 |
muscle precursor cell | 4.18e-20 | 58 |
myoblast | 4.18e-20 | 58 |
multi-potent skeletal muscle stem cell | 4.18e-20 | 58 |
electrically responsive cell | 7.81e-19 | 61 |
electrically active cell | 7.81e-19 | 61 |
smooth muscle cell of the subclavian artery | 1.26e-16 | 5 |
cardiocyte | 1.28e-14 | 16 |
mesodermal cell | 1.48e-09 | 121 |
multi fate stem cell | 3.41e-08 | 427 |
cardiac mesenchymal cell | 4.35e-08 | 4 |
migratory trunk neural crest cell | 4.35e-08 | 4 |
smooth muscle cell of the internal thoracic artery | 4.95e-08 | 2 |
somatic stem cell | 6.46e-08 | 433 |
stem cell | 1.47e-07 | 441 |
smooth muscle cell of the umbilical artery | 1.79e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.81e-17 | 14 |
cell type benign neoplasm | 8.05e-11 | 3 |
leiomyoma | 8.05e-11 | 3 |
female reproductive organ cancer | 4.09e-10 | 27 |
reproductive organ cancer | 2.84e-09 | 29 |
benign neoplasm | 3.34e-08 | 4 |