FFCP PHASE1:Hg19::chr7:36324296..36324314,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:36324296..36324314,+ | |||
|coexpression_cluster_id=C164 | |coexpression_cluster_id=C164 | ||
|description=CAGE_peak_at_chr7:36324296..36324314,+ | |description=CAGE_peak_at_chr7:36324296..36324314,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!4.12e-09!42;CL:0000860!2.47e-08!45 | |ontology_enrichment_celltype=CL:0002057!4.12e-09!42;CL:0000860!2.47e-08!45 | ||
|ontology_enrichment_celltype_v019=CL:0002178;6.73e-11;3!CL:0000775;8.17e-11;3!CL:0000322;1.04e-10;3 | |ontology_enrichment_celltype_v019=CL:0002178;6.73e-11;3!CL:0000775;8.17e-11;3!CL:0000322;1.04e-10;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002178,6.73e-11,3;CL:0000775,8.17e-11,3;CL:0000322,1.20e-10,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4929!1.31e-07!2 | |ontology_enrichment_disease=DOID:4929!1.31e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;1.15e-15;2!DOID:3910;2.21e-15;2!DOID:3908;6.21e-07;5 | |ontology_enrichment_disease_v019=DOID:3493;1.15e-15;2!DOID:3910;2.21e-15;2!DOID:3908;6.21e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,1.15e-15,2;DOID:3910,2.74e-15,2;DOID:3908,6.77e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001893!1.08e-26!34;UBERON:0002619!9.67e-26!22;UBERON:0001869!1.62e-25!32;UBERON:0001049!1.21e-24!57;UBERON:0005068!1.21e-24!57;UBERON:0006241!1.21e-24!57;UBERON:0007135!1.21e-24!57;UBERON:0001950!2.39e-24!20;UBERON:0002791!2.40e-24!33;UBERON:0002780!3.86e-24!41;UBERON:0001890!3.86e-24!41;UBERON:0006240!3.86e-24!41;UBERON:0002616!1.28e-23!59;UBERON:0002020!1.38e-23!34;UBERON:0003528!1.38e-23!34;UBERON:0003080!1.83e-23!42;UBERON:0000956!2.25e-22!25;UBERON:0000203!2.25e-22!25;UBERON:0000955!6.05e-21!69;UBERON:0006238!6.05e-21!69;UBERON:0001017!3.93e-20!82;UBERON:0005743!6.49e-19!86;UBERON:0000073!1.51e-16!94;UBERON:0001016!1.51e-16!94;UBERON:0003075!5.43e-16!86;UBERON:0007284!5.43e-16!86;UBERON:0002346!5.04e-15!90;UBERON:0003056!8.50e-15!61;UBERON:0007023!3.97e-14!115;UBERON:0002021!8.17e-12!5;UBERON:0001872!3.07e-11!5;UBERON:0000200!2.18e-09!6;UBERON:0000033!2.42e-09!123;UBERON:0000153!1.16e-08!129;UBERON:0007811!1.16e-08!129 | |ontology_enrichment_uberon=UBERON:0001893!1.08e-26!34;UBERON:0002619!9.67e-26!22;UBERON:0001869!1.62e-25!32;UBERON:0001049!1.21e-24!57;UBERON:0005068!1.21e-24!57;UBERON:0006241!1.21e-24!57;UBERON:0007135!1.21e-24!57;UBERON:0001950!2.39e-24!20;UBERON:0002791!2.40e-24!33;UBERON:0002780!3.86e-24!41;UBERON:0001890!3.86e-24!41;UBERON:0006240!3.86e-24!41;UBERON:0002616!1.28e-23!59;UBERON:0002020!1.38e-23!34;UBERON:0003528!1.38e-23!34;UBERON:0003080!1.83e-23!42;UBERON:0000956!2.25e-22!25;UBERON:0000203!2.25e-22!25;UBERON:0000955!6.05e-21!69;UBERON:0006238!6.05e-21!69;UBERON:0001017!3.93e-20!82;UBERON:0005743!6.49e-19!86;UBERON:0000073!1.51e-16!94;UBERON:0001016!1.51e-16!94;UBERON:0003075!5.43e-16!86;UBERON:0007284!5.43e-16!86;UBERON:0002346!5.04e-15!90;UBERON:0003056!8.50e-15!61;UBERON:0007023!3.97e-14!115;UBERON:0002021!8.17e-12!5;UBERON:0001872!3.07e-11!5;UBERON:0000200!2.18e-09!6;UBERON:0000033!2.42e-09!123;UBERON:0000153!1.16e-08!129;UBERON:0007811!1.16e-08!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002902;2.73e-29;1!UBERON:0009899;2.73e-29;1!UBERON:0002021;2.02e-23;5!UBERON:0004903;2.21e-15;2!UBERON:0002173;2.21e-15;2!UBERON:0002186;2.21e-15;2!UBERON:0004821;1.04e-10;3!UBERON:0007499;1.04e-10;3!UBERON:0003215;1.04e-10;3!UBERON:0010368;1.04e-10;3!UBERON:0009911;1.04e-10;3!UBERON:0002299;1.04e-10;3!UBERON:0006524;1.04e-10;3!UBERON:0008874;1.04e-10;3!UBERON:0002169;1.04e-10;3!UBERON:0004894;1.04e-10;3!UBERON:0009856;2.35e-08;4!UBERON:0000945;4.79e-07;5!UBERON:0010039;4.79e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0002902;2.73e-29;1!UBERON:0009899;2.73e-29;1!UBERON:0002021;2.02e-23;5!UBERON:0004903;2.21e-15;2!UBERON:0002173;2.21e-15;2!UBERON:0002186;2.21e-15;2!UBERON:0004821;1.04e-10;3!UBERON:0007499;1.04e-10;3!UBERON:0003215;1.04e-10;3!UBERON:0010368;1.04e-10;3!UBERON:0009911;1.04e-10;3!UBERON:0002299;1.04e-10;3!UBERON:0006524;1.04e-10;3!UBERON:0008874;1.04e-10;3!UBERON:0002169;1.04e-10;3!UBERON:0004894;1.04e-10;3!UBERON:0009856;2.35e-08;4!UBERON:0000945;4.79e-07;5!UBERON:0010039;4.79e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002902,2.37e-29,1;UBERON:0009899,2.37e-29,1;UBERON:0002021,1.61e-23,5;UBERON:0004903,2.74e-15,2;UBERON:0002173,2.74e-15,2;UBERON:0002186,2.74e-15,2;UBERON:0004821,1.20e-10,3;UBERON:0003215,1.20e-10,3;UBERON:0010368,1.20e-10,3;UBERON:0009911,1.20e-10,3;UBERON:0002299,1.20e-10,3;UBERON:0006524,1.20e-10,3;UBERON:0008874,1.20e-10,3;UBERON:0002169,1.20e-10,3;UBERON:0004894,1.20e-10,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290796477559129,0.377875943688809,0,0.232429036905685,1.23350366406548,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0.146508179271894,0,0,1.13654458722565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0.193978032976839,0,0,0,0,0.316553979779393,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0.319267718114302,0,0.252071696221718,1.38314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443568258651136,0.405225507710368,0.781078098613847,0.206686796501184,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.543757863814654,0.526182188502793,0,0.111231401892069,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,29.6413705518034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290796477559129,0.377875943688809,0,0.232429036905685,1.23350366406548,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0.146508179271894,0,0,1.13654458722565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0.193978032976839,0,0,0,0,0.316553979779393,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0.319267718114302,0,0.252071696221718,1.38314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443568258651136,0.405225507710368,0.781078098613847,0.206686796501184,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.543757863814654,0.526182188502793,0,0.111231401892069,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,29.6413705518034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr7:36324296..36324314,+ | |short_description=p@chr7:36324296..36324314,+ | ||
}} | }} |
Latest revision as of 09:40, 31 July 2015
Short description: | p@chr7:36324296..36324314, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:36324296..36324314, + |
Coexpression cluster: | C164_signet_corpus_optic_mucinous_substantia_salivary_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 6.73e-11 | 3 |
neutrophil | 8.17e-11 | 3 |
pneumocyte | 1.20e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
occipital pole | 2.37e-29 | 1 |
pole of cerebral hemisphere | 2.37e-29 | 1 |
occipital lobe | 1.61e-23 | 5 |
bronchoalveolar duct junction | 2.74e-15 | 2 |
alveolar duct | 2.74e-15 | 2 |
bronchiole | 2.74e-15 | 2 |
pulmonary alveolus epithelium | 1.20e-10 | 3 |
alveolus | 1.20e-10 | 3 |
pulmonary lobule | 1.20e-10 | 3 |
lobule | 1.20e-10 | 3 |
alveolus of lung | 1.20e-10 | 3 |
alveolar system | 1.20e-10 | 3 |
pulmonary acinus | 1.20e-10 | 3 |
alveolar sac | 1.20e-10 | 3 |
alveolar wall | 1.20e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.15e-15 | 2 |
lung adenocarcinoma | 2.74e-15 | 2 |
non-small cell lung carcinoma | 6.77e-07 | 5 |