FFCP PHASE1:Hg19::chr7:137570496..137570504,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:137570496..137570504,- | |||
|coexpression_cluster_id=C406 | |||
|description=CAGE_peak_at_chr7:137570496..137570504,- | |||
|id=chr7:137570496..137570504,- | |||
|ontology_enrichment_celltype=CL:0002166!3.26e-20!3;CL:0002621!2.02e-19!3;CL:0000244!5.45e-15!4;CL:0000731!5.45e-15!4;CL:0002159!3.73e-12!13;CL:0002327!5.89e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002166;7.20e-85;3!CL:0002159;6.09e-19;14!CL:0002621;9.43e-11;3!CL:0000244;2.18e-08;4!CL:0000731;2.18e-08;4!CL:0002077;5.73e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,2.28e-85,3;CL:0002159,4.77e-19,14;CL:0002621,1.09e-10,3;CL:0000244,2.11e-08,4;CL:0000731,2.11e-08,4;CL:0002077,2.86e-08,34 | |||
|ontology_enrichment_development_v019=UBERON:0005062;2.18e-08;4!UBERON:0007284;2.18e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!2.02e-19!3;UBERON:0001708!2.69e-15!4;UBERON:0001704!2.69e-15!4;UBERON:0000365!4.30e-12!5;UBERON:0002090!2.34e-10!6;UBERON:0005910!3.72e-10!6;UBERON:0002135!8.54e-08!1;UBERON:0001828!1.38e-07!8;UBERON:0002363!4.90e-07!1;UBERON:0007647!4.90e-07!1;UBERON:0010115!4.90e-07!1;UBERON:0001911!5.89e-07!4;UBERON:0005333!5.89e-07!4;UBERON:0008425!5.89e-07!4;UBERON:0005311!5.89e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;6.17e-64;4!UBERON:0008895;6.17e-64;4!UBERON:0011159;2.30e-51;5!UBERON:0002135;2.05e-29;1!UBERON:0011137;7.14e-24;11!UBERON:0010323;7.14e-24;11!UBERON:0000075;1.12e-16;16!UBERON:0002133;1.91e-15;2!UBERON:0003978;9.43e-11;3!UBERON:0000946;9.43e-11;3!UBERON:0001949;9.43e-11;3!UBERON:0004765;1.50e-10;26!UBERON:0000486;2.03e-10;12!UBERON:0001434;7.01e-08;36!UBERON:0000365;5.86e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,2.61e-64,4;UBERON:0008895,2.61e-64,4;UBERON:0011159,1.15e-51,5;UBERON:0010188,3.16e-43,6;UBERON:0002539,3.16e-43,6;UBERON:0008816,3.16e-43,6;UBERON:0002135,2.37e-29,1;UBERON:0010323,5.23e-24,11;UBERON:0011137,4.77e-19,14;UBERON:0000075,9.06e-17,16;UBERON:0002133,2.05e-15,2;UBERON:0008814,5.40e-15,18;UBERON:0003978,9.90e-11,3;UBERON:0009751,9.90e-11,3;UBERON:0000946,9.90e-11,3;UBERON:0002523,9.90e-11,3;UBERON:0005983,9.90e-11,3;UBERON:0002165,9.90e-11,3;UBERON:0002062,9.90e-11,3;UBERON:0007280,9.90e-11,3;UBERON:0001949,1.09e-10,3;UBERON:0000033,1.29e-08,56;UBERON:0000153,8.01e-08,62;UBERON:0007811,8.01e-08,62;UBERON:0000365,5.70e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.09098448236334,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,5.20744597416465,1.98485136139341,0.0895585227028483,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72202149068492,0,0.886860307073351,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494411622680279,0,0,0,0,1.02268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,1.39641200636127,0,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr7:137570496..137570504,- | |||
}} |
Latest revision as of 06:29, 31 July 2015
Short description: | p@chr7:137570496..137570504, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:137570496..137570504, - |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 2.28e-85 | 3 |
general ecto-epithelial cell | 4.77e-19 | 14 |
gingival epithelial cell | 1.09e-10 | 3 |
transitional epithelial cell | 2.11e-08 | 4 |
urothelial cell | 2.11e-08 | 4 |
ecto-epithelial cell | 2.86e-08 | 34 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 2.61e-64 | 4 |
splanchnocranium | 2.61e-64 | 4 |
primary subdivision of cranial skeletal system | 1.15e-51 | 5 |
protuberance | 3.16e-43 | 6 |
pharyngeal arch | 3.16e-43 | 6 |
embryonic head | 3.16e-43 | 6 |
mitral valve | 2.37e-29 | 1 |
cranial skeletal system | 5.23e-24 | 11 |
axial skeletal system | 4.77e-19 | 14 |
subdivision of skeletal system | 9.06e-17 | 16 |
atrioventricular valve | 2.05e-15 | 2 |
pharyngeal arch system | 5.40e-15 | 18 |
valve | 9.90e-11 | 3 |
cardiac mesenchyme | 9.90e-11 | 3 |
cardial valve | 9.90e-11 | 3 |
tunica intima | 9.90e-11 | 3 |
heart layer | 9.90e-11 | 3 |
endocardium | 9.90e-11 | 3 |
endocardial cushion | 9.90e-11 | 3 |
presumptive endocardium | 9.90e-11 | 3 |
gingival epithelium | 1.09e-10 | 3 |
head | 1.29e-08 | 56 |
anterior region of body | 8.01e-08 | 62 |
craniocervical region | 8.01e-08 | 62 |
urothelium | 5.70e-07 | 5 |