FFCP PHASE1:Hg19::chr6:45399724..45399733,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:45399724..45399733,+ | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_at_chr6:45399724..45399733,+ | |||
|id=chr6:45399724..45399733,+ | |||
|ontology_enrichment_celltype=CL:0001024!3.31e-09!1 | |||
|ontology_enrichment_celltype_v019=CL:0000322;3.27e-23;3!CL:0000082;4.91e-15;19!CL:0002202;1.12e-08;9!CL:0002632;1.12e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,3.27e-23,3;CL:0000082,4.91e-15,19;CL:0002202,1.12e-08,9;CL:0002632,1.12e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.96e-10;29!UBERON:0001041;5.96e-10;30 | |||
|ontology_enrichment_disease=DOID:1325!9.67e-11!7;DOID:3904!9.67e-11!7;DOID:0060060!1.89e-09!1;DOID:0060061!1.89e-09!1;DOID:8691!1.89e-09!1;DOID:5409!9.56e-09!4;DOID:3905!1.85e-08!9 | |||
|ontology_enrichment_disease_v019=DOID:0060060;4.66e-66;1!DOID:0060061;4.66e-66;1!DOID:8691;4.66e-66;1!DOID:1325;1.49e-38;7!DOID:3904;1.49e-38;7!DOID:3910;5.04e-34;2!DOID:3905;2.66e-30;9!DOID:1324;1.04e-18;15!DOID:5409;7.35e-18;4!DOID:0050615;1.27e-17;16!DOID:3908;1.60e-14;5!DOID:0060058;6.56e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,4.66e-66,1;DOID:0060061,4.66e-66,1;DOID:8691,4.66e-66,1;DOID:1325,1.49e-38,7;DOID:3904,1.49e-38,7;DOID:3910,5.04e-34,2;DOID:3905,2.66e-30,9;DOID:1324,1.04e-18,15;DOID:5409,7.35e-18,4;DOID:0050615,1.27e-17,16;DOID:3908,1.60e-14,5;DOID:0060058,6.56e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0006947!2.26e-11!3;UBERON:0004054!2.26e-11!3;UBERON:0000998!2.40e-09!1;UBERON:0006868!2.40e-09!1;UBERON:0001301!5.75e-09!1;UBERON:0005904!9.56e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;5.04e-34;2!UBERON:0002173;5.04e-34;2!UBERON:0002186;5.04e-34;2!UBERON:0004821;3.27e-23;3!UBERON:0007499;3.27e-23;3!UBERON:0003215;3.27e-23;3!UBERON:0010368;3.27e-23;3!UBERON:0009911;3.27e-23;3!UBERON:0002299;3.27e-23;3!UBERON:0006524;3.27e-23;3!UBERON:0008874;3.27e-23;3!UBERON:0002169;3.27e-23;3!UBERON:0004894;3.27e-23;3!UBERON:0009856;8.69e-18;4!UBERON:0004802;4.91e-15;19!UBERON:0000115;4.91e-15;19!UBERON:0002048;3.77e-13;22!UBERON:0004807;3.77e-13;22!UBERON:0000117;3.77e-13;22!UBERON:0000171;3.77e-13;22!UBERON:0000170;3.77e-13;22!UBERON:0005178;1.20e-08;34!UBERON:0002224;1.20e-08;34!UBERON:0005181;2.14e-08;35!UBERON:0000065;5.42e-08;44!UBERON:0000058;6.13e-08;10!UBERON:0005911;4.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,5.04e-34,2;UBERON:0002173,5.04e-34,2;UBERON:0002186,5.04e-34,2;UBERON:0004821,3.27e-23,3;UBERON:0003215,3.27e-23,3;UBERON:0010368,3.27e-23,3;UBERON:0009911,3.27e-23,3;UBERON:0002299,3.27e-23,3;UBERON:0006524,3.27e-23,3;UBERON:0008874,3.27e-23,3;UBERON:0002169,3.27e-23,3;UBERON:0004894,3.27e-23,3;UBERON:0004802,4.91e-15,19;UBERON:0000115,4.91e-15,19;UBERON:0002048,3.77e-13,22;UBERON:0000117,3.77e-13,22;UBERON:0000171,3.77e-13,22;UBERON:0000170,3.77e-13,22;UBERON:0005597,3.77e-13,22;UBERON:0000118,3.77e-13,22;UBERON:0004807,1.40e-10,28;UBERON:0005178,6.54e-09,34;UBERON:0002224,6.54e-09,34;UBERON:0005181,1.09e-08,35;UBERON:0005153,2.82e-08,37;UBERON:0008947,4.36e-08,38;UBERON:0003258,4.36e-08,38;UBERON:0000072,9.72e-07,47;UBERON:0005157,9.72e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.411202997999018,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,4.54617834890261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19992437512958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,15.6995054034154,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr6:45399724..45399733,+ | |||
}} |
Latest revision as of 02:03, 31 July 2015
Short description: | p@chr6:45399724..45399733, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:45399724..45399733, + |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 3.27e-23 | 3 |
epithelial cell of lung | 4.91e-15 | 19 |
epithelial cell of tracheobronchial tree | 1.12e-08 | 9 |
epithelial cell of lower respiratory tract | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 5.04e-34 | 2 |
alveolar duct | 5.04e-34 | 2 |
bronchiole | 5.04e-34 | 2 |
pulmonary alveolus epithelium | 3.27e-23 | 3 |
alveolus | 3.27e-23 | 3 |
pulmonary lobule | 3.27e-23 | 3 |
lobule | 3.27e-23 | 3 |
alveolus of lung | 3.27e-23 | 3 |
alveolar system | 3.27e-23 | 3 |
pulmonary acinus | 3.27e-23 | 3 |
alveolar sac | 3.27e-23 | 3 |
alveolar wall | 3.27e-23 | 3 |
respiratory tract epithelium | 4.91e-15 | 19 |
lung epithelium | 4.91e-15 | 19 |
lung | 3.77e-13 | 22 |
respiratory tube | 3.77e-13 | 22 |
respiration organ | 3.77e-13 | 22 |
pair of lungs | 3.77e-13 | 22 |
lung primordium | 3.77e-13 | 22 |
lung bud | 3.77e-13 | 22 |
respiratory system epithelium | 1.40e-10 | 28 |
thoracic cavity element | 6.54e-09 | 34 |
thoracic cavity | 6.54e-09 | 34 |
thoracic segment organ | 1.09e-08 | 35 |
epithelial bud | 2.82e-08 | 37 |
respiratory primordium | 4.36e-08 | 38 |
endoderm of foregut | 4.36e-08 | 38 |
segment of respiratory tract | 9.72e-07 | 47 |
epithelial fold | 9.72e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 4.66e-66 | 1 |
cutaneous T cell lymphoma | 4.66e-66 | 1 |
mycosis fungoides | 4.66e-66 | 1 |
bronchus cancer | 1.49e-38 | 7 |
bronchogenic carcinoma | 1.49e-38 | 7 |
lung adenocarcinoma | 5.04e-34 | 2 |
lung carcinoma | 2.66e-30 | 9 |
lung cancer | 1.04e-18 | 15 |
lung small cell carcinoma | 7.35e-18 | 4 |
respiratory system cancer | 1.27e-17 | 16 |
non-small cell lung carcinoma | 1.60e-14 | 5 |
lymphoma | 6.56e-08 | 10 |