FFCP PHASE1:Hg19::chr6:45399559..45399571,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:45399559..45399571,+ | |||
|coexpression_cluster_id=C42 | |coexpression_cluster_id=C42 | ||
|description=CAGE_peak_at_chr6:45399559..45399571,+ | |description=CAGE_peak_at_chr6:45399559..45399571,+ | ||
|id=chr6:45399559..45399571,+ | |id=chr6:45399559..45399571,+ | ||
|ontology_enrichment_celltype=CL:0000084;5.33e-15;25!CL:0000322;1.40e-14;3!CL:0000082;1.99e-09;19 | |ontology_enrichment_celltype=CL:0000084!1.05e-10!25;CL:0000827!1.05e-10!25;CL:0000784!6.40e-09!3;CL:0000623!1.19e-08!3;CL:0000825!1.19e-08!3;CL:0000838!1.22e-07!52;CL:0000542!1.81e-07!53;CL:0000051!1.81e-07!53 | ||
| | |ontology_enrichment_celltype_v019=CL:0000084;5.33e-15;25!CL:0000322;1.40e-14;3!CL:0000082;1.99e-09;19 | ||
|ontology_enrichment_disease=DOID:1325;1.02e-23;7!DOID:3904;1.02e-23;7!DOID:3910;3.81e-21;2!DOID:3905;1.03e-18;9!DOID:1324;1.15e-11;15!DOID:5409;2.53e-11;4!DOID:0050615;5.28e-11;16!DOID:3908;2.74e-09;5 | |ontology_enrichment_celltype_v019_2=CL:0000084,5.33e-15,25;CL:0000827,5.33e-15,25;CL:0000322,1.40e-14,3;CL:0000082,1.99e-09,19;CL:0000838,1.26e-07,52;CL:0000542,1.70e-07,53;CL:0000051,1.70e-07,53 | ||
|ontology_enrichment_uberon=UBERON:0004903;3.81e-21;2!UBERON:0002173;3.81e-21;2!UBERON:0002186;3.81e-21;2!UBERON:0004821;1.40e-14;3!UBERON:0007499;1.40e-14;3!UBERON:0003215;1.40e-14;3!UBERON:0010368;1.40e-14;3!UBERON:0009911;1.40e-14;3!UBERON:0002299;1.40e-14;3!UBERON:0006524;1.40e-14;3!UBERON:0008874;1.40e-14;3!UBERON:0002169;1.40e-14;3!UBERON:0004894;1.40e-14;3!UBERON:0009856;2.80e-11;4!UBERON:0004802;1.99e-09;19!UBERON:0000115;1.99e-09;19!UBERON:0002048;2.82e-08;22!UBERON:0004807;2.82e-08;22!UBERON:0000117;2.82e-08;22!UBERON:0000171;2.82e-08;22!UBERON:0000170;2.82e-08;22 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0060060!2.67e-07!1;DOID:0060061!2.67e-07!1;DOID:8691!2.67e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1325;1.02e-23;7!DOID:3904;1.02e-23;7!DOID:3910;3.81e-21;2!DOID:3905;1.03e-18;9!DOID:1324;1.15e-11;15!DOID:5409;2.53e-11;4!DOID:0050615;5.28e-11;16!DOID:3908;2.74e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,1.02e-23,7;DOID:3904,1.02e-23,7;DOID:3910,3.81e-21,2;DOID:3905,1.03e-18,9;DOID:1324,1.15e-11,15;DOID:5409,2.53e-11,4;DOID:0050615,5.28e-11,16;DOID:3908,2.74e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0004177!9.30e-08!7;UBERON:0001736!2.37e-07!1;UBERON:0006298!2.37e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;3.81e-21;2!UBERON:0002173;3.81e-21;2!UBERON:0002186;3.81e-21;2!UBERON:0004821;1.40e-14;3!UBERON:0007499;1.40e-14;3!UBERON:0003215;1.40e-14;3!UBERON:0010368;1.40e-14;3!UBERON:0009911;1.40e-14;3!UBERON:0002299;1.40e-14;3!UBERON:0006524;1.40e-14;3!UBERON:0008874;1.40e-14;3!UBERON:0002169;1.40e-14;3!UBERON:0004894;1.40e-14;3!UBERON:0009856;2.80e-11;4!UBERON:0004802;1.99e-09;19!UBERON:0000115;1.99e-09;19!UBERON:0002048;2.82e-08;22!UBERON:0004807;2.82e-08;22!UBERON:0000117;2.82e-08;22!UBERON:0000171;2.82e-08;22!UBERON:0000170;2.82e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.81e-21,2;UBERON:0002173,3.81e-21,2;UBERON:0002186,3.81e-21,2;UBERON:0004821,1.40e-14,3;UBERON:0003215,1.40e-14,3;UBERON:0010368,1.40e-14,3;UBERON:0009911,1.40e-14,3;UBERON:0002299,1.40e-14,3;UBERON:0006524,1.40e-14,3;UBERON:0008874,1.40e-14,3;UBERON:0002169,1.40e-14,3;UBERON:0004894,1.40e-14,3;UBERON:0004802,1.99e-09,19;UBERON:0000115,1.99e-09,19;UBERON:0002048,2.82e-08,22;UBERON:0000117,2.82e-08,22;UBERON:0000171,2.82e-08,22;UBERON:0000170,2.82e-08,22;UBERON:0005597,2.82e-08,22;UBERON:0000118,2.82e-08,22 | |||
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|short_description=p@chr6:45399559..45399571,+ | |short_description=p@chr6:45399559..45399571,+ | ||
}} | }} |
Latest revision as of 02:02, 31 July 2015
Short description: | p@chr6:45399559..45399571, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:45399559..45399571, + |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.33e-15 | 25 |
pro-T cell | 5.33e-15 | 25 |
pneumocyte | 1.40e-14 | 3 |
epithelial cell of lung | 1.99e-09 | 19 |
lymphoid lineage restricted progenitor cell | 1.26e-07 | 52 |
lymphocyte | 1.70e-07 | 53 |
common lymphoid progenitor | 1.70e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.81e-21 | 2 |
alveolar duct | 3.81e-21 | 2 |
bronchiole | 3.81e-21 | 2 |
pulmonary alveolus epithelium | 1.40e-14 | 3 |
alveolus | 1.40e-14 | 3 |
pulmonary lobule | 1.40e-14 | 3 |
lobule | 1.40e-14 | 3 |
alveolus of lung | 1.40e-14 | 3 |
alveolar system | 1.40e-14 | 3 |
pulmonary acinus | 1.40e-14 | 3 |
alveolar sac | 1.40e-14 | 3 |
alveolar wall | 1.40e-14 | 3 |
respiratory tract epithelium | 1.99e-09 | 19 |
lung epithelium | 1.99e-09 | 19 |
lung | 2.82e-08 | 22 |
respiratory tube | 2.82e-08 | 22 |
respiration organ | 2.82e-08 | 22 |
pair of lungs | 2.82e-08 | 22 |
lung primordium | 2.82e-08 | 22 |
lung bud | 2.82e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 1.02e-23 | 7 |
bronchogenic carcinoma | 1.02e-23 | 7 |
lung adenocarcinoma | 3.81e-21 | 2 |
lung carcinoma | 1.03e-18 | 9 |
lung cancer | 1.15e-11 | 15 |
lung small cell carcinoma | 2.53e-11 | 4 |
respiratory system cancer | 5.28e-11 | 16 |
non-small cell lung carcinoma | 2.74e-09 | 5 |