FFCP PHASE1:Hg19::chr6:45399533..45399540,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:45399533..45399540,+ | |||
|coexpression_cluster_id=C42 | |coexpression_cluster_id=C42 | ||
|description=CAGE_peak_at_chr6:45399533..45399540,+ | |description=CAGE_peak_at_chr6:45399533..45399540,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002253!1.61e-08!2 | |ontology_enrichment_celltype=CL:0002253!1.61e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000322;5.96e-34;3!CL:0000082;5.37e-22;19!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13 | |ontology_enrichment_celltype_v019=CL:0000322;5.96e-34;3!CL:0000082;5.37e-22;19!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,5.96e-34,3;CL:0000082,5.37e-22,19;CL:0002202,2.45e-12,9;CL:0002632,2.45e-12,9;CL:0002368,5.70e-09,13 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.74e-15;29!UBERON:0001041;1.90e-14;30 | |ontology_enrichment_development_v019=UBERON:0008947;6.74e-15;29!UBERON:0001041;1.90e-14;30 | ||
|ontology_enrichment_disease=DOID:1325!2.69e-09!7;DOID:3904!2.69e-09!7;DOID:3910!1.29e-08!2;DOID:3905!2.02e-07!9 | |ontology_enrichment_disease=DOID:1325!2.69e-09!7;DOID:3904!2.69e-09!7;DOID:3910!1.29e-08!2;DOID:3905!2.02e-07!9 | ||
|ontology_enrichment_disease_v019=DOID:1325;4.76e-57;7!DOID:3904;4.76e-57;7!DOID:3910;4.52e-50;2!DOID:3905;9.75e-45;9!DOID:1324;1.82e-27;15!DOID:5409;5.56e-26;4!DOID:0050615;7.63e-26;16!DOID:3908;5.15e-21;5 | |ontology_enrichment_disease_v019=DOID:1325;4.76e-57;7!DOID:3904;4.76e-57;7!DOID:3910;4.52e-50;2!DOID:3905;9.75e-45;9!DOID:1324;1.82e-27;15!DOID:5409;5.56e-26;4!DOID:0050615;7.63e-26;16!DOID:3908;5.15e-21;5 | ||
|ontology_enrichment_disease_v019_2=DOID:1325,4.76e-57,7;DOID:3904,4.76e-57,7;DOID:3910,4.52e-50,2;DOID:3905,9.75e-45,9;DOID:1324,1.82e-27,15;DOID:5409,5.56e-26,4;DOID:0050615,7.63e-26,16;DOID:3908,5.15e-21,5 | |||
|ontology_enrichment_uberon=UBERON:0001736!8.63e-16!1;UBERON:0006298!8.63e-16!1;UBERON:0004903!1.29e-08!2;UBERON:0002173!1.29e-08!2;UBERON:0002186!1.29e-08!2;UBERON:0001829!1.50e-08!2;UBERON:0001155!3.34e-07!9 | |ontology_enrichment_uberon=UBERON:0001736!8.63e-16!1;UBERON:0006298!8.63e-16!1;UBERON:0004903!1.29e-08!2;UBERON:0002173!1.29e-08!2;UBERON:0002186!1.29e-08!2;UBERON:0001829!1.50e-08!2;UBERON:0001155!3.34e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0009856;7.14e-26;4!UBERON:0004802;5.37e-22;19!UBERON:0000115;5.37e-22;19!UBERON:0002048;3.41e-19;22!UBERON:0004807;3.41e-19;22!UBERON:0000117;3.41e-19;22!UBERON:0000171;3.41e-19;22!UBERON:0000170;3.41e-19;22!UBERON:0005178;1.77e-12;34!UBERON:0002224;1.77e-12;34!UBERON:0005181;4.10e-12;35!UBERON:0000065;1.71e-11;44!UBERON:0000058;3.02e-11;10!UBERON:0005911;3.81e-10;36!UBERON:0000072;3.67e-09;37!UBERON:0000915;3.55e-08;52!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0009856;7.14e-26;4!UBERON:0004802;5.37e-22;19!UBERON:0000115;5.37e-22;19!UBERON:0002048;3.41e-19;22!UBERON:0004807;3.41e-19;22!UBERON:0000117;3.41e-19;22!UBERON:0000171;3.41e-19;22!UBERON:0000170;3.41e-19;22!UBERON:0005178;1.77e-12;34!UBERON:0002224;1.77e-12;34!UBERON:0005181;4.10e-12;35!UBERON:0000065;1.71e-11;44!UBERON:0000058;3.02e-11;10!UBERON:0005911;3.81e-10;36!UBERON:0000072;3.67e-09;37!UBERON:0000915;3.55e-08;52!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,4.52e-50,2;UBERON:0002173,4.52e-50,2;UBERON:0002186,4.52e-50,2;UBERON:0004821,5.96e-34,3;UBERON:0003215,5.96e-34,3;UBERON:0010368,5.96e-34,3;UBERON:0009911,5.96e-34,3;UBERON:0002299,5.96e-34,3;UBERON:0006524,5.96e-34,3;UBERON:0008874,5.96e-34,3;UBERON:0002169,5.96e-34,3;UBERON:0004894,5.96e-34,3;UBERON:0004802,5.37e-22,19;UBERON:0000115,5.37e-22,19;UBERON:0002048,3.41e-19,22;UBERON:0000117,3.41e-19,22;UBERON:0000171,3.41e-19,22;UBERON:0000170,3.41e-19,22;UBERON:0005597,3.41e-19,22;UBERON:0000118,3.41e-19,22;UBERON:0004807,2.22e-15,28;UBERON:0005178,6.62e-13,34;UBERON:0002224,6.62e-13,34;UBERON:0005181,1.42e-12,35;UBERON:0005153,5.76e-12,37;UBERON:0008947,1.10e-11,38;UBERON:0003258,1.10e-11,38;UBERON:0000072,1.08e-09,47;UBERON:0005157,1.08e-09,47;UBERON:0000915,6.99e-09,52;UBERON:0000065,1.34e-08,54;UBERON:0007196,5.93e-08,15;UBERON:0001558,5.93e-08,15 | |||
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|short_description=p@chr6:45399533..45399540,+ | |short_description=p@chr6:45399533..45399540,+ | ||
}} | }} |
Latest revision as of 02:02, 31 July 2015
Short description: | p@chr6:45399533..45399540, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:45399533..45399540, + |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 5.96e-34 | 3 |
epithelial cell of lung | 5.37e-22 | 19 |
epithelial cell of tracheobronchial tree | 2.45e-12 | 9 |
epithelial cell of lower respiratory tract | 2.45e-12 | 9 |
respiratory epithelial cell | 5.70e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 4.52e-50 | 2 |
alveolar duct | 4.52e-50 | 2 |
bronchiole | 4.52e-50 | 2 |
pulmonary alveolus epithelium | 5.96e-34 | 3 |
alveolus | 5.96e-34 | 3 |
pulmonary lobule | 5.96e-34 | 3 |
lobule | 5.96e-34 | 3 |
alveolus of lung | 5.96e-34 | 3 |
alveolar system | 5.96e-34 | 3 |
pulmonary acinus | 5.96e-34 | 3 |
alveolar sac | 5.96e-34 | 3 |
alveolar wall | 5.96e-34 | 3 |
respiratory tract epithelium | 5.37e-22 | 19 |
lung epithelium | 5.37e-22 | 19 |
lung | 3.41e-19 | 22 |
respiratory tube | 3.41e-19 | 22 |
respiration organ | 3.41e-19 | 22 |
pair of lungs | 3.41e-19 | 22 |
lung primordium | 3.41e-19 | 22 |
lung bud | 3.41e-19 | 22 |
respiratory system epithelium | 2.22e-15 | 28 |
thoracic cavity element | 6.62e-13 | 34 |
thoracic cavity | 6.62e-13 | 34 |
thoracic segment organ | 1.42e-12 | 35 |
epithelial bud | 5.76e-12 | 37 |
respiratory primordium | 1.10e-11 | 38 |
endoderm of foregut | 1.10e-11 | 38 |
segment of respiratory tract | 1.08e-09 | 47 |
epithelial fold | 1.08e-09 | 47 |
thoracic segment of trunk | 6.99e-09 | 52 |
respiratory tract | 1.34e-08 | 54 |
tracheobronchial tree | 5.93e-08 | 15 |
lower respiratory tract | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 4.76e-57 | 7 |
bronchogenic carcinoma | 4.76e-57 | 7 |
lung adenocarcinoma | 4.52e-50 | 2 |
lung carcinoma | 9.75e-45 | 9 |
lung cancer | 1.82e-27 | 15 |
lung small cell carcinoma | 5.56e-26 | 4 |
respiratory system cancer | 7.63e-26 | 16 |
non-small cell lung carcinoma | 5.15e-21 | 5 |