FFCP PHASE1:Hg19::chr6:36653519..36653558,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:36653519..36653558,+ | |||
|coexpression_cluster_id=C672 | |||
|description=CAGE_peak_at_chr6:36653519..36653558,+ | |description=CAGE_peak_at_chr6:36653519..36653558,+ | ||
|id=chr6:36653519..36653558,+ | |id=chr6:36653519..36653558,+ | ||
|ontology_enrichment_celltype=CL:0002371!1.80e-20!591;CL:0000144!6.14e-19!625;CL:0002057!3.68e-17!42;CL:0000548!3.28e-15!679;CL:0000004!3.28e-15!679;CL:0000255!3.28e-15!679;CL:0000860!3.50e-15!45;CL:0000012!2.08e-14!682;CL:0000723!9.07e-12!436;CL:0000048!1.50e-11!430;CL:0002009!6.06e-11!65;CL:0000034!7.78e-11!444;CL:0000557!2.89e-10!71;CL:0002194!3.41e-10!63;CL:0000576!3.41e-10!63;CL:0000040!3.41e-10!63;CL:0000559!3.41e-10!63;CL:0000766!2.04e-09!76;CL:0000839!4.45e-09!70;CL:0000063!4.52e-09!578;CL:0000003!3.27e-08!722;CL:0002320!6.47e-07!365;CL:0000192!6.63e-07!42;CL:0000514!6.63e-07!42 | |ontology_enrichment_celltype=CL:0002371!1.80e-20!591;CL:0000144!6.14e-19!625;CL:0002057!3.68e-17!42;CL:0000548!3.28e-15!679;CL:0000004!3.28e-15!679;CL:0000255!3.28e-15!679;CL:0000860!3.50e-15!45;CL:0000012!2.08e-14!682;CL:0000723!9.07e-12!436;CL:0000048!1.50e-11!430;CL:0002009!6.06e-11!65;CL:0000034!7.78e-11!444;CL:0000557!2.89e-10!71;CL:0002194!3.41e-10!63;CL:0000576!3.41e-10!63;CL:0000040!3.41e-10!63;CL:0000559!3.41e-10!63;CL:0000766!2.04e-09!76;CL:0000839!4.45e-09!70;CL:0000063!4.52e-09!578;CL:0000003!3.27e-08!722;CL:0002320!6.47e-07!365;CL:0000192!6.63e-07!42;CL:0000514!6.63e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.00e-26;33!CL:0002057;1.00e-26;33!CL:0000473;2.37e-18;39!CL:0000234;2.37e-18;39!CL:0000576;4.16e-12;48!CL:0000766;1.28e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.77e-23,42;CL:0002057,9.77e-23,42;CL:0000473,1.12e-19,48;CL:0000234,1.12e-19,48;CL:0000557,9.13e-18,67;CL:0002009,1.06e-17,61;CL:0002194,2.04e-16,59;CL:0000576,2.04e-16,59;CL:0000040,2.04e-16,59;CL:0000559,2.04e-16,59;CL:0000839,4.71e-16,66;CL:0000766,1.53e-15,72;CL:0000723,5.17e-13,433;CL:0000048,6.30e-13,427;CL:0000034,4.45e-12,441;CL:0002320,1.85e-09,361;CL:0000134,2.16e-09,354;CL:0000763,4.99e-09,108;CL:0000049,4.99e-09,108;CL:0000219,7.68e-08,386;CL:0000136,9.44e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002057;1.21e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.41e-17!167;UBERON:0000926!8.43e-12!448;UBERON:0004120!8.43e-12!448;UBERON:0006603!8.43e-12!448;UBERON:0003081!3.21e-11!216;UBERON:0002371!3.23e-10!80;UBERON:0004765!3.13e-09!101;UBERON:0001434!3.13e-09!101;UBERON:0001474!3.28e-09!86;UBERON:0000486!2.41e-07!82;UBERON:0002385!5.64e-07!63;UBERON:0001015!5.64e-07!63;UBERON:0000383!5.64e-07!63;UBERON:0002193!6.13e-07!112;UBERON:0000914!7.39e-07!83;UBERON:0002329!7.39e-07!83;UBERON:0003077!7.39e-07!83;UBERON:0003059!7.39e-07!83;UBERON:0007282!7.39e-07!83;UBERON:0009618!7.39e-07!83;UBERON:0007285!7.39e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.54e-07;6!UBERON:0002358;7.54e-07;6!UBERON:0003684;7.54e-07;6!UBERON:0001178;7.54e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.23e-20,167;UBERON:0002371,7.41e-17,76;UBERON:0001474,1.30e-15,82;UBERON:0004765,2.19e-15,90;UBERON:0001434,2.32e-14,100;UBERON:0000926,4.66e-14,315;UBERON:0004120,4.66e-14,315;UBERON:0006603,4.66e-14,315;UBERON:0002405,1.56e-12,93;UBERON:0002390,1.89e-10,98;UBERON:0003061,1.89e-10,98;UBERON:0002193,2.27e-09,108;UBERON:0003081,3.14e-09,203;UBERON:0002384,3.63e-09,371;UBERON:0003688,7.08e-07,6;UBERON:0002358,7.08e-07,6;UBERON:0003684,7.08e-07,6;UBERON:0001178,7.08e-07,6 | |||
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|phase1_expression=1.45342703416445,3.42560838225573,2.25527046553554,3.00219895059391,3.5756887554183,4.36169262050184,2.53299878168311,3.79031924056099,5.22371256399677,0.982935746006035,3.48900583986214,1.31064823278103,0.263766978228454,0.247532705920093,0.662794751455832,2.01697543935533,1.20538905604795,1.46062018077475,2.92759679274304,0.246242116153576,0.408001382488506,0,0,0.547497700291537,0.251085279189606,0.458480434487708,0.492603536699674,0.236132343941038,0.393364276848904,0.383829398097213,0.928896739896456,1.83884244895785,0.6024118375565,2.21852406100073,0,0,0,0.553995408531877,1.20326668482085,1.51907609501096,0.223915474239924,0,0,2.03557534291391,1.13362783106643,2.42584061187816,5.34586784883075,6.57868620834921,4.64559556342655,9.49384894663097,12.2957139133968,12.0605937243178,5.5159308917859,3.22742341791913,6.77132432971709,3.76484679085209,3.0019676506363,4.04502272001152,12.549439587207,8.34415470397843,4.47535988059329,8.57613380485462,9.3747919082167,8.95071976118658,4.93355705668593,5.10646702222026,9.9651559839292,8.29120595347253,14.0800387973454,7.8187984093842,3.02699751316684,6.62899744777616,6.32924774881769,0.422510572623884,0.850417199860174,0.209658645508376,0.786300418025466,0.450530678524519,0.32145117339416,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,1.1384259382189,0.587237189370939,1.14681968437569,0,0,0,0.393419540227666,0.393010762749165,0.205601498999509,0.501559486172034,0,0,0,0.445641827540694,0,0,0,0.25618263945135,0.130059347559878,0,0,0.579606171470105,0,0,0,0.339928028092699,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,2.43806866313962,0,0.12786256184353,1.0843174571537,1.00267582127178,1.59331170856906,0,0.973269740605272,0.0945348171640679,0.665188192387692,0.351339142772504,0,1.09288586487763,2.59549109949101,1.29818957461873,2.26368658489047,2.79211717089617,0.715471872916026,0.571994910780128,0.371457501329565,0.39752481473341,0.860234595106124,0.347140501607594,0.56530794192401,0.838998872419812,1.10047216776027,0.208994966536811,0.516833518338658,1.06729878806013,0.33472061276467,0.805658634218294,0.760272105718513,0.732186172644509,0.735326160691737,0.81014194788176,0,0,0.225222960966644,0,0,0.183201743930407,1.31780417436063,3.87780264148325,0,2.98183171017191,2.02608818663328,0.264818361626438,0.573673241497627,1.41867352879343,1.12135520028461,0,2.71334303258876,0,0.67355336034844,0.326923806226917,0.151357427644931,0.576175924479999,0.468642863667593,0.936480230490962,0,0.448346041655403,0.352303495931295,0.485618833104395,0.280901613404497,1.02077085627447,0.61417158655884,0.929932030581889,5.94001428641027,2.71993622206413,0.910161361938026,2.15585442544872,0.168336113954066,0,0.277064115484183,1.31693286264251,0.919463387397059,1.35214253015937,0.340296549480063,0.179389635688862,1.06778694409284,0.211931901159562,0.600182192168805,0.309157587715317,0.515281080091258,1.67505170698431,0.337552664482532,0.584622030967192,0.252433774244115,0.736399189138395,0.646584227275248,0,0.705264687593482,0.339121184620975,1.15956511897978,1.09098448236334,0.573609190778008,0.487894824518382,0.265059536642971,0,0.207322110030741,0.252320850875628,0,1.56449532329816,1.28648187638577,0,1.85747171212792,2.88751792667834,0.236613600079688,0.674338760312407,0,0.55146986366197,0.435758888184812,0.474541238222193,0.539325232640658,0.784885860501384,0,0,0,0.4115740113314,0,1.26755034821831,1.96565443335525,0.590789906681404,0,0.122988438543114,0.343135620597051,1.20725313949488,1.1240175325762,0.703702806881416,0.740707561268237,0.325808305310325,3.11980435583874,0,0.115930404975077,0.352226082707465,0.721832238805369,0.925971025153221,0.380508304469197,0,0,0,0.702012795417713,0.743155811443641,1.87467667973554,1.51183915378974,0.141775097242386,1.43293636324557,0.290633938513962,1.15014803749563,0,0,1.24396869324463,3.31475892859011,1.00993946741104,0.126995788584338,3.81988425558278,1.17217447210047,3.4214489204541,0.102827492703324,0.901029173531752,0.571652865261156,0.448524337381443,0,0.36669142910475,1.03417372606222,0,0.845302752556,0.797814349754612,1.04007436911366,0.257207374262142,1.41849132023278,1.5985330740966,0.142977993658148,0,1.64648067356154,0.325736184293735,0,0,0.301439377059586,0.871533458600294,1.29964888536674,0,0,2.10833939483032,0.479249710983165,1.14861935834114,0,0.723906533337896,0.61642896765115,0.358121926479791,0.112085143993527,0,0.862510299438069,0.256686072559497,0.254094624222463,0,0,0.502548796003046,0.637938751653163,0,0,0,0.12269149171914,2.00068208423871,0.271265023699736,1.66376689224646,4.28229573113188,2.36553622550902,0.937131319941706,0.601892199455438,9.09630016223939,0,0,0,0.868836144680828,0.391602314925481,1.71571711905428,0.206768026122887,1.07857100409308,0.853820462427555,0.909382714338778,0,0.30239029332968,3.47350930946288,0.920771839728375,3.08726103876381,4.35673107469383,1.53512174720011,4.3430558708774,2.96836132889982,0.462629081407967,1.77561725313127,0.246381468041427,1.55776328755086,0.581051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| ||
|short_description=p@chr6:36653519..36653558,+ | |short_description=p@chr6:36653519..36653558,+ | ||
}} | }} |
Latest revision as of 01:10, 31 July 2015
Short description: | p@chr6:36653519..36653558, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:36653519..36653558, + |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.77e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.77e-23 | 42 |
defensive cell | 1.12e-19 | 48 |
phagocyte | 1.12e-19 | 48 |
granulocyte monocyte progenitor cell | 9.13e-18 | 67 |
macrophage dendritic cell progenitor | 1.06e-17 | 61 |
monopoietic cell | 2.04e-16 | 59 |
monocyte | 2.04e-16 | 59 |
monoblast | 2.04e-16 | 59 |
promonocyte | 2.04e-16 | 59 |
myeloid lineage restricted progenitor cell | 4.71e-16 | 66 |
myeloid leukocyte | 1.53e-15 | 72 |
somatic stem cell | 5.17e-13 | 433 |
multi fate stem cell | 6.30e-13 | 427 |
stem cell | 4.45e-12 | 441 |
connective tissue cell | 1.85e-09 | 361 |
mesenchymal cell | 2.16e-09 | 354 |
myeloid cell | 4.99e-09 | 108 |
common myeloid progenitor | 4.99e-09 | 108 |
motile cell | 7.68e-08 | 386 |
fat cell | 9.44e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.23e-20 | 167 |
bone marrow | 7.41e-17 | 76 |
bone element | 1.30e-15 | 82 |
skeletal element | 2.19e-15 | 90 |
skeletal system | 2.32e-14 | 100 |
mesoderm | 4.66e-14 | 315 |
mesoderm-derived structure | 4.66e-14 | 315 |
presumptive mesoderm | 4.66e-14 | 315 |
immune system | 1.56e-12 | 93 |
hematopoietic system | 1.89e-10 | 98 |
blood island | 1.89e-10 | 98 |
hemolymphoid system | 2.27e-09 | 108 |
lateral plate mesoderm | 3.14e-09 | 203 |
connective tissue | 3.63e-09 | 371 |
omentum | 7.08e-07 | 6 |
peritoneum | 7.08e-07 | 6 |
abdominal cavity | 7.08e-07 | 6 |
visceral peritoneum | 7.08e-07 | 6 |