FFCP PHASE1:Hg19::chr6:150813996..150814008,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:150813996..150814008,+ | |||
|coexpression_cluster_id=C619 | |||
|description=CAGE_peak_at_chr6:150813996..150814008,+ | |description=CAGE_peak_at_chr6:150813996..150814008,+ | ||
|id=chr6:150813996..150814008,+ | |id=chr6:150813996..150814008,+ | ||
|ontology_enrichment_celltype=CL:0000066!8.67e-21!254;CL:1000507!2.30e-11!12;CL:1000494!2.30e-11!12;CL:1000497!5.76e-10!18;CL:0002518!5.76e-10!18;CL:0000159!5.40e-09!2;CL:1000449!2.34e-08!16;CL:0002681!2.62e-07!13;CL:0002584!2.62e-07!13;CL:0000223!4.90e-07!59 | |ontology_enrichment_celltype=CL:0000066!8.67e-21!254;CL:1000507!2.30e-11!12;CL:1000494!2.30e-11!12;CL:1000497!5.76e-10!18;CL:0002518!5.76e-10!18;CL:0000159!5.40e-09!2;CL:1000449!2.34e-08!16;CL:0002681!2.62e-07!13;CL:0002584!2.62e-07!13;CL:0000223!4.90e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.96e-14;3!CL:0000082;2.21e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.09e-14,3;CL:0000082,2.26e-09,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.11e-12;30 | |||
|ontology_enrichment_disease=DOID:305!2.59e-17!106;DOID:1749!5.82e-17!14;DOID:0050687!1.77e-12!143;DOID:299!4.72e-11!25;DOID:3493!7.72e-09!2;DOID:4929!8.35e-09!2;DOID:162!1.02e-08!235;DOID:14566!2.15e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.90e-26;14!DOID:3910;6.30e-21;2!DOID:1324;1.31e-11;15!DOID:0050615;5.99e-11;16!DOID:3908;3.35e-09;5!DOID:1325;6.21e-07;7!DOID:3904;6.21e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.90e-26,14;DOID:3910,6.96e-21,2;DOID:1324,1.34e-11,15;DOID:0050615,6.14e-11,16;DOID:305,5.66e-10,106;DOID:3908,3.49e-09,5;DOID:0050687,1.55e-07,143;DOID:1325,6.39e-07,7;DOID:3904,6.39e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0000058!1.16e-13!26;UBERON:0009773!2.30e-11!12;UBERON:0001231!2.30e-11!12;UBERON:0004810!2.30e-11!12;UBERON:0002394!4.95e-10!4;UBERON:0003928!4.95e-10!4;UBERON:0002294!9.82e-10!7;UBERON:0001173!9.82e-10!7;UBERON:0004912!9.82e-10!7;UBERON:0004211!2.34e-08!16;UBERON:0001285!2.34e-08!16;UBERON:0007684!2.34e-08!16;UBERON:0003220!2.34e-08!16;UBERON:0004208!2.34e-08!16;UBERON:0006555!7.94e-08!17;UBERON:0005103!7.94e-08!17;UBERON:0000083!7.94e-08!17;UBERON:0009201!7.94e-08!17;UBERON:0004819!7.94e-08!17;UBERON:0006553!7.94e-08!17;UBERON:0003074!7.94e-08!17;UBERON:0003060!7.94e-08!17;UBERON:0003729!1.42e-07!5;UBERON:0000080!2.35e-07!18;UBERON:0002120!2.35e-07!18;UBERON:0004875!2.35e-07!18;UBERON:0005721!2.35e-07!18;UBERON:0005754!2.35e-07!18;UBERON:0007297!2.35e-07!18;UBERON:0001225!2.62e-07!13;UBERON:0008987!2.62e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;6.30e-21;2!UBERON:0002173;6.30e-21;2!UBERON:0002186;6.30e-21;2!UBERON:0000058;9.54e-17;10!UBERON:0004821;1.96e-14;3!UBERON:0007499;1.96e-14;3!UBERON:0003215;1.96e-14;3!UBERON:0010368;1.96e-14;3!UBERON:0009911;1.96e-14;3!UBERON:0002299;1.96e-14;3!UBERON:0006524;1.96e-14;3!UBERON:0008874;1.96e-14;3!UBERON:0002169;1.96e-14;3!UBERON:0004894;1.96e-14;3!UBERON:0002394;3.60e-11;4!UBERON:0003928;3.60e-11;4!UBERON:0009856;3.60e-11;4!UBERON:0004802;2.21e-09;19!UBERON:0000115;2.21e-09;19!UBERON:0002048;3.09e-08;22!UBERON:0004807;3.09e-08;22!UBERON:0000117;3.09e-08;22!UBERON:0000171;3.09e-08;22!UBERON:0000170;3.09e-08;22!UBERON:0002294;6.21e-07;7!UBERON:0001173;6.21e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,6.96e-21,2;UBERON:0002173,6.96e-21,2;UBERON:0002186,6.96e-21,2;UBERON:0004821,2.09e-14,3;UBERON:0003215,2.09e-14,3;UBERON:0010368,2.09e-14,3;UBERON:0009911,2.09e-14,3;UBERON:0002299,2.09e-14,3;UBERON:0006524,2.09e-14,3;UBERON:0008874,2.09e-14,3;UBERON:0002169,2.09e-14,3;UBERON:0004894,2.09e-14,3;UBERON:0004802,2.26e-09,19;UBERON:0000115,2.26e-09,19;UBERON:0000058,2.56e-09,19;UBERON:0002048,3.15e-08,22;UBERON:0000117,3.15e-08,22;UBERON:0000171,3.15e-08,22;UBERON:0000170,3.15e-08,22;UBERON:0005597,3.15e-08,22;UBERON:0000118,3.15e-08,22;UBERON:0002394,6.78e-08,6;UBERON:0003928,6.78e-08,6;UBERON:0007499,2.58e-07,25;UBERON:0009856,4.55e-07,26 | |||
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| ||
|short_description=p@chr6:150813996..150814008,+ | |short_description=p@chr6:150813996..150814008,+ | ||
}} | }} |
Latest revision as of 20:54, 30 July 2015
Short description: | p@chr6:150813996..150814008, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:150813996..150814008, + |
Coexpression cluster: | C619_squamous_bile_Small_Mammary_mucinous_Tracheal_giant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.09e-14 | 3 |
epithelial cell of lung | 2.26e-09 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 6.96e-21 | 2 |
alveolar duct | 6.96e-21 | 2 |
bronchiole | 6.96e-21 | 2 |
pulmonary alveolus epithelium | 2.09e-14 | 3 |
alveolus | 2.09e-14 | 3 |
pulmonary lobule | 2.09e-14 | 3 |
lobule | 2.09e-14 | 3 |
alveolus of lung | 2.09e-14 | 3 |
alveolar system | 2.09e-14 | 3 |
pulmonary acinus | 2.09e-14 | 3 |
alveolar sac | 2.09e-14 | 3 |
alveolar wall | 2.09e-14 | 3 |
respiratory tract epithelium | 2.26e-09 | 19 |
lung epithelium | 2.26e-09 | 19 |
duct | 2.56e-09 | 19 |
lung | 3.15e-08 | 22 |
respiratory tube | 3.15e-08 | 22 |
respiration organ | 3.15e-08 | 22 |
pair of lungs | 3.15e-08 | 22 |
lung primordium | 3.15e-08 | 22 |
lung bud | 3.15e-08 | 22 |
bile duct | 6.78e-08 | 6 |
digestive system duct | 6.78e-08 | 6 |
epithelial sac | 2.58e-07 | 25 |
sac | 4.55e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.90e-26 | 14 |
lung adenocarcinoma | 6.96e-21 | 2 |
lung cancer | 1.34e-11 | 15 |
respiratory system cancer | 6.14e-11 | 16 |
carcinoma | 5.66e-10 | 106 |
non-small cell lung carcinoma | 3.49e-09 | 5 |
cell type cancer | 1.55e-07 | 143 |
bronchus cancer | 6.39e-07 | 7 |
bronchogenic carcinoma | 6.39e-07 | 7 |