FFCP PHASE1:Hg19::chr5:82835000..82835031,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr5:82835000..82835031,+ | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_at_chr5:82835000..82835031,+ | |||
|id=chr5:82835000..82835031,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.65e-23!42;CL:0000860!4.21e-20!45;CL:0002194!4.05e-12!63;CL:0000576!4.05e-12!63;CL:0000040!4.05e-12!63;CL:0000559!4.05e-12!63;CL:0002009!2.93e-11!65;CL:0000839!2.25e-09!70;CL:0000034!2.64e-09!444;CL:0000557!4.90e-09!71;CL:0000048!9.48e-09!430;CL:0000723!9.70e-09!436;CL:0000766!6.28e-08!76;CL:0002334!4.39e-07!12;CL:0000055!8.62e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-36;33!CL:0002057;1.27e-36;33!CL:0000473;8.75e-26;39!CL:0000234;8.75e-26;39!CL:0000576;1.52e-20;48!CL:0000766;6.58e-11;69!CL:0002334;8.53e-11;12!CL:1000306;1.00e-07;4!CL:0002547;1.00e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.37e-38,42;CL:0002057,7.37e-38,42;CL:0000473,7.59e-32,48;CL:0000234,7.59e-32,48;CL:0002194,1.76e-23,59;CL:0000576,1.76e-23,59;CL:0000040,1.76e-23,59;CL:0000559,1.76e-23,59;CL:0002009,2.08e-22,61;CL:0000839,5.12e-20,66;CL:0000557,1.39e-19,67;CL:0000766,1.36e-17,72;CL:0000134,6.38e-12,354;CL:0002320,7.56e-12,361;CL:0000048,3.25e-11,427;CL:0000723,9.08e-11,433;CL:0000034,1.10e-10,441;CL:0002334,1.57e-10,12;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0000219,1.06e-09,386;CL:0002087,1.53e-08,115;CL:0002031,7.43e-08,120;CL:1000306,8.08e-08,4;CL:0002547,8.08e-08,4 | |||
|ontology_enrichment_development_v019=CL:0002057;1.56e-27;42 | |||
|ontology_enrichment_disease=DOID:2394!9.82e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.91e-15;14!DOID:120;8.20e-08;27!DOID:193;4.45e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.87e-15,14;DOID:120,6.04e-08,27;DOID:193,3.36e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002204!2.18e-12!167;UBERON:0000468!9.87e-09!659;UBERON:0002371!1.34e-07!80;UBERON:0001474!7.47e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002118;7.42e-10;5!UBERON:0004797;1.00e-07;4!UBERON:0000415;1.00e-07;4!UBERON:0007240;1.00e-07;4!UBERON:0005742;1.00e-07;4!UBERON:0005734;1.00e-07;4!UBERON:0004664;1.00e-07;4!UBERON:0004663;1.00e-07;4!UBERON:0000992;8.50e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.26e-17,76;UBERON:0001474,1.17e-15,82;UBERON:0004765,2.07e-14,90;UBERON:0001434,5.77e-13,100;UBERON:0002405,9.67e-13,93;UBERON:0002384,3.09e-12,371;UBERON:0002204,3.65e-12,167;UBERON:0002390,1.21e-11,98;UBERON:0003061,1.21e-11,98;UBERON:0000926,1.26e-11,315;UBERON:0004120,1.26e-11,315;UBERON:0006603,1.26e-11,315;UBERON:0003081,5.95e-10,203;UBERON:0002118,8.12e-10,5;UBERON:0002193,8.92e-10,108;UBERON:0000415,8.08e-08,4;UBERON:0007240,8.08e-08,4;UBERON:0005742,8.08e-08,4;UBERON:0005734,8.08e-08,4;UBERON:0004664,8.08e-08,4;UBERON:0004663,8.08e-08,4;UBERON:0000992,8.91e-07,13 | |||
|phase1_expression=0.908391896352783,1.71280419112787,0.986680828671798,1.0007329835313,0,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,2.6893005858071,1.20538905604795,0,1.46379839637152,0,0,0,0,0.821246550437305,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,6.41742231904453,3.25516306073778,0,0,0,4.21654892460738,0.755751887377619,0.727752183563449,6.74044207026485,2.46700732813095,3.40677007984614,4.60307827715441,2.56160706529101,1.41889337933151,4.13694816883942,4.51839278508678,2.70852973188684,6.96496656307637,4.36649840092553,0.898893937780338,3.67300670845083,1.28371610830437,1.91801137739712,2.30895910130701,4.3882004676759,2.55734850319616,16.8321358404579,0,2.4912889959823,8.79370328398601,10.9511412868242,1.95469960234605,4.23779651843358,0.736555271975129,1.89877432464531,0.845021145247767,0,0.209658645508376,1.57260083605093,1.05123824989054,2.57160938715328,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,1.24930726552346,0,0,0,0,0,4.87613732627923,0.670700859703636,0,1.0843174571537,0.50133791063589,0.289693037921647,0,0,0.189069634328136,1.33037638477538,1.58102614247627,0,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,3.97577561356255,1.64619665163954,1.45650098894541,3.72887606973458,2.12801029319014,0,0,0.98667019366864,0,0.134710672069688,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0.368502951935304,0.103325781175765,0,0.494533858557114,0,0,0,0,0,0,0,0.300476117813194,0.567160915800105,2.33206526395521,0.213557388818567,0.635795703478686,0.300091096084402,0.103052529238439,0.772921620136887,0,2.19409231913646,0,1.00973509697646,0.0920498986422993,0.161646056818812,1.42003837006646,0.10075209822764,0.169560592310488,0,0,0,0.243947412259191,0.265059536642971,0.348581828608555,0.829288440122964,1.00928340350251,0.72995471815166,0,1.92972281457866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,1.44331342025273,0.115930404975077,1.6437217193015,0,0,0,0,0,0.246217006087397,0,0,0,0.16798212819886,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,1.03417372606222,0,0,0.531876233169741,0,0,0,0,0.142977993658148,0,0,0.65147236858747,0,0,0.602878754119172,0,0.699810938274399,0,0,0,0.239624855491583,0,0,0.579125226670317,0,0.358121926479791,0,0,0,0,0.254094624222463,0,0.773288812777695,0,1.27587750330633,0,0,0,0.613457458595699,1.00034104211935,0,1.87173775377726,1.96271887676878,1.10391690523754,1.05427273493442,0.601892199455438,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,0.862856803274467,0.320182673410333,0,0,0,0.992431231275107,2.30192959932094,2.80660094433074,1.15325234330131,1.02341449813341,4.3430558708774,0,1.69630663182921,1.24293207719189,0.492762936082855,2.07701771673448,1.27831416305955,0,0.601519410909855,0.0920809889358963,0.114814448164607,0.910455840033585,0,0,0.0770153371044148,0,0,0.422206515571503,0,0,0.215915916102139,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,0.0915694648183434,0,0,0,3.21367859688319,0.096670718292122,0.154048617114644,0.460511024178389,0.137836572484531,0.107420244868274,0.725083469571143,0.426133137080504,0.712256285173899,0.165284915360978,0.576570202095319,0.127612712494584,0.10115778085555,0.464845549297286,4.40737285562896,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,1.2655176988749,0.762520775695299,0,0.855877976067841,0.318203247925937,0,0.359744915166629,0.274537029736055,0.471249609382746,0,0,0,0,0.487426979262569,0,0.136499911407986,0.707027159768564,1.13008116620243,0.551365343546124,0.66343897524122,0.438450885253763,0,0.655894752046633,0,1.239293992399,0.281695602532241,0.430234056612155,0,0,0,0.633322905892992,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0.851692475380653,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.562677665642051,0.222617410045812,0.988823245360557,0,0.796991953004279,0,0,0,0,1.55519793830904,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56262495439963,0,0.361789315876224,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0.0884575645033392,0,0,0,0,0,1.60515529459758,0.234264445725339,0,0,0,0,0,1.53036380815245,0.252746318513952,0,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.677942222341597,0.274083849293502,0,0.126621591911757,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0.429765441419957,0.262887354279314,1.95497680890578,0.458320848023367,0.717873024576814,0.199679000498991,0,0,0.0671834724867263,1.44119953416961,0,0,0.0824158583811665,0,0,0,0,0.408610218334727,0.482259445395058,0.275078873194468,0.83088067605837,0,0,0,0,0,0,0,0,0,0.714695326373367,1.32418394073086,0,0.542999601753713,0.864221491201268,1.30634944043764,0,0,0.170388021785422,0.113312091520126,0,0,0.258565912723101,0.13223260174269,0,0,0.213574825135389,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0.468334905806882,0,0.895528817321244,2.80455971816669,0.554805861502613,0,0.251567901752575,4.44905610798268,0.915360273587694,0.907385542579434,2.95330681107283,2.06997209985487,0.63718706865481,0.449803112163605,0.931577741257556,7.87941794897625,2.65841714557995,1.5652351854352,1.6528336989694,3.42724690951916,2.44122439922797,2.54588122883583,1.28892668450986,2.32016879939247,6.76763010787647,0.400027764663154,2.40376993627955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04993214870357,0,0,0.276516872303462,0,0,0,0.655219697692825,0,0,0,0,0,0,0.552317850755522,0,0,0,0,0,0.327628914576042,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0.41023272848151,0.504143392443436,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0.327543835020193,0,0.0675375846183947,0,0,0,2.18789923607288,0,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0,0.514464028312255,0.135939465953663,0,0,0,0.078493092850514,0.314231179832004,0,0,0.647782773655864,0.9555033757741,0,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,2.8666168169323,7.04689220326092,0,0.731507549893617,0,0.205325613712494,1.1598144313382,0.971421986118279,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0.245148321753905,0,0.588925401344836,0.594092800654172,0.8453114551668,1.86919826156599,0,0,0,0,0,0,0,0,0.716697915757256,0,0,1.30905207102113,0,1.85997509083376,3.23522940041993,2.16313281061895,0.252332849670158,0.109265571963696,0.253397002022874,0.101988829741982,0.26721740526556,0.18378979906969,0.50141507858475,0.0757786982182394,0,0,0.517164979309476,0,0.476128862927481,0,0,1.23345048838675,0,0,0,0.342233301085281,0,0,0,0,0,0,2.24563005266467,2.34640942403454,0,0.813792356631477,0,0,0 | |||
|short_description=p@chr5:82835000..82835031,+ | |||
}} |
Latest revision as of 16:56, 30 July 2015
Short description: | p@chr5:82835000..82835031, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:82835000..82835031, + |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.37e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.37e-38 | 42 |
defensive cell | 7.59e-32 | 48 |
phagocyte | 7.59e-32 | 48 |
monopoietic cell | 1.76e-23 | 59 |
monocyte | 1.76e-23 | 59 |
monoblast | 1.76e-23 | 59 |
promonocyte | 1.76e-23 | 59 |
macrophage dendritic cell progenitor | 2.08e-22 | 61 |
myeloid lineage restricted progenitor cell | 5.12e-20 | 66 |
granulocyte monocyte progenitor cell | 1.39e-19 | 67 |
myeloid leukocyte | 1.36e-17 | 72 |
mesenchymal cell | 6.38e-12 | 354 |
connective tissue cell | 7.56e-12 | 361 |
multi fate stem cell | 3.25e-11 | 427 |
somatic stem cell | 9.08e-11 | 433 |
stem cell | 1.10e-10 | 441 |
preadipocyte | 1.57e-10 | 12 |
myeloid cell | 1.00e-09 | 108 |
common myeloid progenitor | 1.00e-09 | 108 |
motile cell | 1.06e-09 | 386 |
nongranular leukocyte | 1.53e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 7.43e-08 | 120 |
fibroblast of tunica adventitia of artery | 8.08e-08 | 4 |
fibroblast of the aortic adventitia | 8.08e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.26e-17 | 76 |
bone element | 1.17e-15 | 82 |
skeletal element | 2.07e-14 | 90 |
skeletal system | 5.77e-13 | 100 |
immune system | 9.67e-13 | 93 |
connective tissue | 3.09e-12 | 371 |
musculoskeletal system | 3.65e-12 | 167 |
hematopoietic system | 1.21e-11 | 98 |
blood island | 1.21e-11 | 98 |
mesoderm | 1.26e-11 | 315 |
mesoderm-derived structure | 1.26e-11 | 315 |
presumptive mesoderm | 1.26e-11 | 315 |
lateral plate mesoderm | 5.95e-10 | 203 |
right ovary | 8.12e-10 | 5 |
hemolymphoid system | 8.92e-10 | 108 |
artery wall | 8.08e-08 | 4 |
tunica adventitia of artery | 8.08e-08 | 4 |
adventitia | 8.08e-08 | 4 |
tunica adventitia of blood vessel | 8.08e-08 | 4 |
aorta tunica adventitia | 8.08e-08 | 4 |
aorta wall | 8.08e-08 | 4 |
female gonad | 8.91e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.87e-15 | 14 |
female reproductive organ cancer | 6.04e-08 | 27 |
reproductive organ cancer | 3.36e-07 | 29 |